Wall clock time and date at job start Mon Mar 30 2020 03:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29499 * 1 3 3 Si 1.86792 * 120.00096 * 2 1 4 4 H 1.48499 * 109.47427 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47322 * 119.99819 * 3 2 1 6 6 H 1.48504 * 109.47081 * 239.99655 * 3 2 1 7 7 C 1.46602 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99655 * 155.92422 * 7 2 1 9 9 C 1.39243 * 120.00342 * 335.92633 * 7 2 1 10 10 C 1.41644 * 120.76217 * 334.83961 * 9 7 2 11 11 C 1.36176 * 120.18994 * 179.69608 * 10 9 7 12 12 C 1.38921 * 121.66586 * 0.59052 * 11 10 9 13 13 N 1.48018 * 119.46542 * 179.69185 * 12 11 10 14 14 O 1.31695 * 120.00000 * 0.02562 * 13 12 11 15 15 O 1.31706 * 120.00011 * 180.02562 * 13 12 11 16 16 C 1.38560 * 121.07314 * 359.71311 * 12 11 10 17 17 N 1.38173 * 134.28400 * 179.97438 * 16 12 11 18 18 H 0.96996 * 126.40769 * 0.02562 * 17 16 12 19 19 C 1.34925 * 107.18235 * 180.02562 * 17 16 12 20 20 N 1.30812 * 110.07824 * 359.97438 * 19 17 16 21 21 C 1.33736 * 109.74983 * 0.02562 * 20 19 17 22 22 H 0.96995 * 120.00093 * 174.78700 * 1 2 3 23 23 H 1.07995 * 119.90127 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.16566 * 180.26239 * 11 10 9 25 25 H 1.08005 * 124.95942 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6176 0.0000 4 1 1.2641 2.7464 -0.0006 5 1 3.0827 1.6964 1.2125 6 1 3.0828 1.6963 -1.2125 7 6 2.0279 -1.2697 0.0006 8 1 3.0375 -1.3105 -0.3810 9 6 1.4225 -2.4229 0.4930 10 6 0.3778 -2.3423 1.4460 11 6 -0.2103 -3.4774 1.9151 12 6 0.1948 -4.7370 1.4920 13 7 -0.4739 -5.9389 2.0391 14 8 -1.4448 -5.8089 2.9193 15 8 -0.0979 -7.1382 1.6456 16 6 1.2150 -4.8867 0.5664 17 7 1.8235 -5.9737 -0.0314 18 1 1.6093 -6.9078 0.1184 19 6 2.7715 -5.4928 -0.8623 20 7 2.7873 -4.1855 -0.8169 21 6 1.8570 -3.7519 0.0405 22 1 -0.4850 -0.8365 -0.0763 23 1 0.0431 -1.3776 1.7976 24 1 -1.0083 -3.3965 2.6384 25 1 3.4223 -6.0986 -1.4754 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396099433.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:29 Heat of formation + Delta-G solvation = 37.116990 kcal Electronic energy + Delta-G solvation = -15587.771131 eV Core-core repulsion = 12762.146295 eV Total energy + Delta-G solvation = -2825.624836 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.98551 -39.29895 -38.41262 -36.01268 -34.60758 -33.89612 -31.63528 -30.54848 -28.55900 -25.67488 -23.71575 -23.27394 -22.19407 -20.73161 -19.19840 -18.58051 -18.04433 -17.34640 -16.60679 -16.22305 -16.04310 -15.70160 -15.40649 -14.79098 -14.30033 -13.78376 -13.19173 -13.00615 -12.61600 -12.34040 -11.85948 -11.69259 -11.65292 -11.52802 -11.40266 -11.27136 -11.05926 -10.09910 -9.88642 -9.53318 -7.23762 -1.13503 0.36645 0.74951 1.13163 1.48361 1.52792 1.87530 1.89259 2.08622 2.15786 2.22653 2.89482 3.34229 3.84423 3.99777 4.22848 4.29645 4.40886 4.60220 4.80041 4.91456 4.98038 5.16161 5.33016 5.60516 5.68002 5.80758 5.98528 6.50351 6.62635 6.98662 7.12209 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.032538 B = 0.008564 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.324568 B = 3268.639695 C = 4031.141718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.679 5.679 2 C -0.012 4.012 3 Si 1.128 2.872 4 H -0.262 1.262 5 H -0.247 1.247 6 H -0.241 1.241 7 C -0.250 4.250 8 H 0.137 0.863 9 C 0.044 3.956 10 C -0.180 4.180 11 C -0.034 4.034 12 C -0.098 4.098 13 N 0.047 4.953 14 O -0.429 6.429 15 O -0.423 6.423 16 C 0.057 3.943 17 N -0.552 5.552 18 H 0.432 0.568 19 C 0.195 3.805 20 N -0.487 5.487 21 C -0.002 4.002 22 H 0.315 0.685 23 H 0.147 0.853 24 H 0.129 0.871 25 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.612 8.879 -5.671 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.295 5.295 2 C -0.244 4.244 3 Si 0.939 3.061 4 H -0.186 1.186 5 H -0.171 1.171 6 H -0.164 1.164 7 C -0.274 4.274 8 H 0.154 0.846 9 C 0.038 3.962 10 C -0.203 4.203 11 C -0.054 4.054 12 C -0.216 4.216 13 N 0.428 4.572 14 O -0.553 6.553 15 O -0.548 6.548 16 C -0.062 4.062 17 N -0.161 5.161 18 H 0.274 0.726 19 C -0.087 4.087 20 N -0.205 5.205 21 C -0.132 4.132 22 H 0.131 0.869 23 H 0.164 0.836 24 H 0.147 0.853 25 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 8.743 10.784 -6.018 15.131 hybrid contribution -1.329 -3.844 0.920 4.170 sum 7.414 6.941 -5.099 11.364 Atomic orbital electron populations 1.70054 1.09404 1.36594 1.13431 1.31112 0.95226 1.07412 0.90683 0.82885 0.75054 0.67167 0.81008 1.18587 1.17094 1.16375 1.23819 1.01196 0.91961 1.10421 0.84573 1.18244 0.93990 0.89618 0.94313 1.20907 1.00595 0.97223 1.01609 1.19942 0.98288 0.89021 0.98135 1.19042 1.06462 0.83591 1.12462 1.49756 1.02162 1.03095 1.02196 1.96007 1.28300 1.95089 1.35941 1.95881 1.75776 1.10753 1.72410 1.18198 0.98616 0.89779 0.99570 1.43222 1.29199 1.09388 1.34264 0.72595 1.25912 0.94834 0.90712 0.97275 1.69610 1.21011 1.10148 1.19776 1.19924 0.99674 0.91925 1.01663 0.86909 0.83555 0.85320 0.72055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -22.89 12.34 23.23 0.29 -22.60 15 2 C -0.01 -0.36 5.15 87.22 0.45 0.09 15 3 Si 1.13 23.01 30.08 68.60 2.06 25.07 15 4 H -0.26 -5.57 7.11 99.48 0.71 -4.86 15 5 H -0.25 -4.72 7.11 99.48 0.71 -4.02 15 6 H -0.24 -4.34 7.11 99.48 0.71 -3.63 15 7 C -0.25 -8.58 9.28 24.70 0.23 -8.35 15 8 H 0.14 4.29 8.02 -2.91 -0.02 4.27 15 9 C 0.04 1.80 5.52 -19.91 -0.11 1.69 15 10 C -0.18 -7.31 7.94 22.63 0.18 -7.13 15 11 C -0.03 -1.55 9.43 21.95 0.21 -1.34 15 12 C -0.10 -5.04 6.91 36.62 0.25 -4.78 15 13 N 0.05 2.77 4.98 -45.89 -0.23 2.54 15 14 O -0.43 -26.56 19.08 3.52 0.07 -26.49 15 15 O -0.42 -24.69 17.87 3.50 0.06 -24.63 15 16 C 0.06 2.67 6.86 38.79 0.27 2.94 15 17 N -0.55 -21.47 5.96 -191.54 -1.14 -22.61 15 18 H 0.43 16.05 7.47 -92.71 -0.69 15.35 15 19 C 0.20 6.24 12.95 180.21 2.33 8.57 15 20 N -0.49 -18.84 11.21 -187.62 -2.10 -20.94 15 21 C 0.00 -0.10 7.22 41.71 0.30 0.20 15 22 H 0.31 11.42 6.62 -92.71 -0.61 10.81 15 23 H 0.15 5.33 6.44 -2.91 -0.02 5.31 15 24 H 0.13 5.82 7.49 -2.91 -0.02 5.79 15 25 H 0.26 4.86 8.06 -2.91 -0.02 4.84 15 Total: -1.00 -67.77 238.20 3.84 -63.92 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 0.73 Total: 33.86 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 4.11 Total: -8.12 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -3.19 Total: -63.61 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: 0.13 Total: -51.12 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: 2.06 Total: 25.07 kcal Total: -67.77 3.84 -63.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396099433.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.041 kcal (2) G-P(sol) polarization free energy of solvation -67.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds