Wall clock time and date at job start Mon Mar 30 2020 03:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29486 * 1 3 3 Si 1.86799 * 119.99704 * 2 1 4 4 H 1.48505 * 109.47241 * 90.00053 * 3 2 1 5 5 H 1.48507 * 109.47036 * 209.99694 * 3 2 1 6 6 H 1.48495 * 109.47465 * 329.99607 * 3 2 1 7 7 C 1.46605 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00216 * 197.92770 * 7 2 1 9 9 C 1.39556 * 119.99955 * 17.92666 * 7 2 1 10 10 C 1.46213 * 120.70874 * 40.99122 * 9 7 2 11 11 N 1.36542 * 134.37389 * 0.68961 * 10 9 7 12 12 H 0.96998 * 126.26513 * 359.31621 * 11 10 9 13 13 C 1.36161 * 107.46259 * 179.56699 * 11 10 9 14 14 N 1.30108 * 109.95094 * 359.74768 * 13 11 10 15 15 C 1.35864 * 109.39058 * 0.02562 * 14 13 11 16 16 C 1.39805 * 133.60514 * 179.97438 * 15 14 13 17 17 C 1.38478 * 121.01595 * 180.02562 * 16 15 14 18 18 C 1.37372 * 121.56711 * 359.97438 * 17 16 15 19 19 N 1.48019 * 119.99427 * 180.02562 * 18 17 16 20 20 O 1.31705 * 120.00009 * 2.97774 * 19 18 17 21 21 O 1.31698 * 120.00027 * 182.98203 * 19 18 17 22 22 H 0.97000 * 119.99835 * 186.61678 * 1 2 3 23 23 H 1.08000 * 125.01986 * 179.75820 * 13 11 10 24 24 H 1.07996 * 119.49002 * 0.02562 * 16 15 14 25 25 H 1.07997 * 119.21357 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6178 0.0000 4 1 2.4763 2.0465 1.4001 5 1 3.5264 1.4402 -0.7000 6 1 1.4263 2.6527 -0.7001 7 6 2.0279 -1.2696 0.0006 8 1 3.0686 -1.2922 0.2885 9 6 1.3810 -2.4490 -0.3709 10 6 0.4529 -2.4677 -1.5005 11 7 0.0138 -1.5305 -2.3912 12 1 0.2707 -0.5954 -2.4135 13 6 -0.8550 -2.1477 -3.2387 14 7 -0.9674 -3.4044 -2.9215 15 6 -0.1771 -3.6715 -1.8491 16 6 0.0835 -4.8275 -1.1073 17 6 0.9588 -4.8048 -0.0346 18 6 1.6041 -3.6523 0.3428 19 7 2.5332 -3.6678 1.4950 20 8 2.7864 -4.7981 2.1217 21 8 3.1067 -2.5512 1.8935 22 1 -0.4850 -0.8345 0.0968 23 1 -1.3739 -1.6652 -4.0538 24 1 -0.4055 -5.7525 -1.3752 25 1 1.1384 -5.7148 0.5185 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396101401.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:42 Heat of formation + Delta-G solvation = 65.513011 kcal Electronic energy + Delta-G solvation = -15952.121334 eV Core-core repulsion = 13127.727842 eV Total energy + Delta-G solvation = -2824.393492 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.45162 -37.71791 -35.70135 -34.86666 -32.63304 -32.09218 -29.91918 -29.00574 -26.18029 -24.30694 -22.27473 -21.18549 -20.66991 -19.01398 -17.51530 -17.06243 -16.09708 -15.53019 -14.93349 -14.62919 -14.24183 -14.07481 -13.95573 -13.25381 -12.62366 -12.19519 -11.84062 -11.40184 -10.97137 -10.92206 -10.68219 -10.09224 -9.89190 -9.63380 -9.56674 -9.22821 -9.16037 -8.43997 -7.95593 -7.67895 -5.37947 0.90620 1.86924 2.47054 2.66690 2.73339 2.88639 2.91628 3.25314 3.33008 3.57740 3.79077 4.54519 4.80509 5.30681 5.72485 5.83775 5.96062 6.11730 6.27469 6.44584 6.85220 6.85815 6.94487 7.02029 7.36767 7.43192 7.60014 7.83836 7.85219 8.41106 8.64125 8.84461 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.017923 B = 0.015794 C = 0.008748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.824359 B = 1772.437645 C = 3199.923978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.015 3.985 3 Si 1.082 2.918 4 H -0.257 1.257 5 H -0.261 1.261 6 H -0.264 1.264 7 C -0.362 4.362 8 H 0.131 0.869 9 C 0.106 3.894 10 C 0.001 3.999 11 N -0.559 5.559 12 H 0.420 0.580 13 C 0.209 3.791 14 N -0.496 5.496 15 C 0.079 3.921 16 C -0.169 4.169 17 C -0.030 4.030 18 C -0.111 4.111 19 N 0.046 4.954 20 O -0.348 6.348 21 O -0.284 6.284 22 H 0.311 0.689 23 H 0.207 0.793 24 H 0.120 0.880 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.071 5.366 -6.704 8.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.216 4.216 3 Si 0.900 3.100 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.390 4.390 8 H 0.149 0.851 9 C 0.099 3.901 10 C -0.113 4.113 11 N -0.165 5.165 12 H 0.259 0.741 13 C -0.076 4.076 14 N -0.216 5.216 15 C -0.046 4.046 16 C -0.192 4.192 17 C -0.052 4.052 18 C -0.215 4.215 19 N 0.466 4.534 20 O -0.492 6.492 21 O -0.444 6.444 22 H 0.127 0.873 23 H 0.224 0.776 24 H 0.138 0.862 25 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.004 6.190 -7.323 10.048 hybrid contribution 0.813 -0.750 0.739 1.330 sum -2.191 5.440 -6.585 8.818 Atomic orbital electron populations 1.69977 1.08536 1.35924 1.19143 1.29603 0.95312 1.05669 0.90985 0.83400 0.75701 0.70729 0.80217 1.18155 1.18553 1.18812 1.23227 1.00964 0.91030 1.23770 0.85103 1.16989 0.90376 0.92650 0.90058 1.19915 1.05038 0.90139 0.96216 1.42802 1.36504 1.11949 1.25287 0.74079 1.25069 0.95110 0.89637 0.97751 1.70374 1.23188 1.13536 1.14550 1.18840 0.96990 0.93513 0.95208 1.19414 1.05106 0.96158 0.98478 1.20013 0.93591 0.96247 0.95316 1.19382 1.09213 0.97252 0.95694 1.49508 1.00836 1.01207 1.01807 1.96089 1.74980 1.16282 1.61833 1.96061 1.55460 1.17436 1.75435 0.87333 0.77625 0.86187 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -14.56 12.05 55.99 0.67 -13.89 15 2 C 0.02 0.30 4.73 -15.17 -0.07 0.23 15 3 Si 1.08 16.56 30.06 -169.99 -5.11 11.45 15 4 H -0.26 -4.01 7.11 56.52 0.40 -3.61 15 5 H -0.26 -3.84 7.11 56.52 0.40 -3.44 15 6 H -0.26 -3.77 7.11 56.52 0.40 -3.37 15 7 C -0.36 -8.24 7.61 -35.72 -0.27 -8.51 15 8 H 0.13 3.12 6.25 -52.48 -0.33 2.79 15 9 C 0.11 2.51 5.14 -104.90 -0.54 1.97 15 10 C 0.00 0.03 5.75 -81.81 -0.47 -0.44 15 11 N -0.56 -9.75 5.41 -10.22 -0.06 -9.80 15 12 H 0.42 6.54 7.71 -40.82 -0.31 6.23 15 13 C 0.21 3.32 12.98 -89.67 -1.16 2.16 15 14 N -0.50 -9.69 11.29 -12.05 -0.14 -9.82 15 15 C 0.08 1.70 7.23 -84.73 -0.61 1.08 15 16 C -0.17 -3.55 10.06 -38.91 -0.39 -3.94 15 17 C -0.03 -0.68 9.49 -39.81 -0.38 -1.06 15 18 C -0.11 -2.78 6.95 -78.95 -0.55 -3.33 15 19 N 0.05 1.29 4.98 34.44 0.17 1.46 15 20 O -0.35 -9.83 19.11 -31.57 -0.60 -10.44 15 21 O -0.28 -7.97 16.38 -31.57 -0.52 -8.49 15 22 H 0.31 6.86 6.91 -40.82 -0.28 6.58 15 23 H 0.21 2.14 8.06 -52.49 -0.42 1.72 15 24 H 0.12 2.23 8.06 -52.49 -0.42 1.81 15 25 H 0.13 2.71 7.51 -52.49 -0.39 2.32 15 LS Contribution 235.06 15.07 3.54 3.54 Total: -1.00 -29.35 235.06 -7.44 -36.79 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -0.96 Total: 11.03 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -4.45 Total: -11.83 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.65 Total: -32.05 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -1.12 Total: -18.92 kcal Atomic # 14 Polarization: 16.56 SS G_CDS: -5.11 Total: 11.45 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.35 -7.44 -36.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396101401.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.306 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds