Wall clock time and date at job start Mon Mar 30 2020 03:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29483 * 1 3 3 Si 1.86809 * 119.99918 * 2 1 4 4 H 1.48499 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46842 * 299.99572 * 3 2 1 6 6 H 1.48494 * 109.47097 * 59.99734 * 3 2 1 7 7 C 1.46610 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00164 * 164.56311 * 7 2 1 9 9 C 1.39549 * 119.99426 * 344.56379 * 7 2 1 10 10 C 1.41696 * 120.72779 * 335.99600 * 9 7 2 11 11 C 1.36346 * 120.13760 * 179.97438 * 10 9 7 12 12 N 1.48016 * 119.14805 * 179.97438 * 11 10 9 13 13 O 1.31696 * 119.99511 * 359.97438 * 12 11 10 14 14 O 1.31696 * 120.00064 * 179.72255 * 12 11 10 15 15 C 1.38516 * 121.70633 * 0.25575 * 11 10 9 16 16 C 1.39768 * 120.99370 * 359.48534 * 15 11 10 17 17 N 1.35842 * 133.70984 * 180.15445 * 16 15 11 18 18 C 1.30120 * 109.38050 * 180.31860 * 17 16 15 19 19 N 1.36176 * 109.96010 * 0.02562 * 18 17 16 20 20 H 0.96996 * 126.26493 * 180.02562 * 19 18 17 21 21 C 1.36509 * 107.46463 * 359.97438 * 19 18 17 22 22 H 0.97005 * 119.99557 * 359.97438 * 1 2 3 23 23 H 1.07998 * 119.93058 * 0.02562 * 10 9 7 24 24 H 1.07998 * 119.50045 * 179.72248 * 15 11 10 25 25 H 1.08004 * 125.02221 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2948 0.0000 0.0000 3 14 2.2288 1.6178 0.0000 4 1 3.6888 1.3465 -0.0006 5 1 1.8701 2.3964 -1.2126 6 1 1.8700 2.3965 1.2124 7 6 2.0279 -1.2696 0.0006 8 1 3.0787 -1.2866 -0.2484 9 6 1.3679 -2.4562 0.3228 10 6 0.1934 -2.4391 1.1154 11 6 -0.4421 -3.6057 1.4225 12 7 -1.6670 -3.5624 2.2524 13 8 -2.1291 -2.4074 2.6844 14 8 -2.2973 -4.6785 2.5546 15 6 0.0320 -4.8306 0.9828 16 6 1.1821 -4.9160 0.1932 17 7 1.8597 -5.9501 -0.3696 18 6 2.8909 -5.4897 -1.0160 19 7 2.9397 -4.1331 -0.9079 20 1 3.6093 -3.5501 -1.2985 21 6 1.8730 -3.7439 -0.1501 22 1 -0.4850 0.8401 0.0004 23 1 -0.1996 -1.5002 1.4762 24 1 -0.4973 -5.7331 1.2510 25 1 3.6035 -6.0943 -1.5575 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396103901.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:31 Heat of formation + Delta-G solvation = 78.682546 kcal Electronic energy + Delta-G solvation = -15515.623741 eV Core-core repulsion = 12691.801323 eV Total energy + Delta-G solvation = -2823.822418 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.23991 -38.24700 -36.03493 -34.11022 -33.41818 -32.29492 -30.06155 -28.78539 -25.78456 -25.20636 -22.10945 -20.97327 -20.65634 -18.28985 -17.60151 -17.08335 -16.56021 -15.65156 -15.32831 -14.97492 -14.35315 -13.91401 -13.35883 -13.12712 -12.43347 -12.08782 -11.66955 -11.24030 -11.01751 -10.80860 -10.71837 -10.35740 -10.13637 -10.05051 -9.78745 -9.60465 -9.37973 -7.94284 -7.63422 -7.45302 -4.84473 0.43598 1.94665 2.29255 2.52512 2.69135 2.72802 2.77820 3.40023 3.46674 3.62483 4.06703 4.86639 4.91484 5.45656 5.92054 6.04447 6.20495 6.26582 6.37554 6.53839 6.58179 7.04570 7.13494 7.37824 7.46189 7.76149 7.86565 7.92935 8.04183 8.12522 8.55715 9.39270 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.011940 C = 0.007366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.413789 B = 2344.515344 C = 3800.377033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.068 3.932 3 Si 0.928 3.072 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.427 4.427 8 H 0.092 0.908 9 C 0.138 3.862 10 C -0.182 4.182 11 C 0.068 3.932 12 N -0.003 5.003 13 O -0.196 6.196 14 O -0.214 6.214 15 C -0.182 4.182 16 C 0.083 3.917 17 N -0.502 5.502 18 C 0.220 3.780 19 N -0.577 5.577 20 H 0.417 0.583 21 C -0.012 4.012 22 H 0.302 0.698 23 H 0.153 0.847 24 H 0.125 0.875 25 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.364 1.301 -3.600 8.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.343 5.343 2 C -0.163 4.163 3 Si 0.750 3.250 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.452 4.452 8 H 0.110 0.890 9 C 0.133 3.867 10 C -0.206 4.206 11 C -0.019 4.019 12 N 0.471 4.529 13 O -0.389 6.389 14 O -0.403 6.403 15 C -0.206 4.206 16 C -0.036 4.036 17 N -0.224 5.224 18 C -0.066 4.066 19 N -0.185 5.185 20 H 0.255 0.745 21 C -0.124 4.124 22 H 0.116 0.884 23 H 0.171 0.829 24 H 0.143 0.857 25 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 7.340 0.526 -3.851 8.306 hybrid contribution 0.454 1.704 -0.141 1.769 sum 7.794 2.230 -3.992 9.036 Atomic orbital electron populations 1.69054 1.08923 1.32087 1.24206 1.27602 0.94775 1.02451 0.91480 0.85919 0.80868 0.78683 0.79578 1.17668 1.19099 1.18606 1.20663 0.96996 0.89661 1.37917 0.89000 1.17230 0.91142 0.87888 0.90477 1.20553 0.99309 0.96340 1.04401 1.19485 0.85806 0.96692 0.99952 1.50820 1.02481 1.01588 0.97976 1.96187 1.71565 1.13211 1.57895 1.96159 1.60970 1.18789 1.64399 1.18814 0.99196 0.95241 1.07306 1.18119 0.96464 0.88151 1.00885 1.70341 1.06848 1.30802 1.14408 1.25081 0.98723 0.81205 1.01600 1.42526 1.23986 1.08311 1.43708 0.74530 1.20487 0.92880 0.96882 1.02118 0.88441 0.82930 0.85715 0.77751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -16.01 10.94 55.99 0.61 -15.40 15 2 C 0.07 1.39 5.37 -15.17 -0.08 1.31 15 3 Si 0.93 15.11 29.67 -169.99 -5.04 10.07 15 4 H -0.25 -4.03 7.11 56.52 0.40 -3.63 15 5 H -0.27 -4.27 7.11 56.52 0.40 -3.87 15 6 H -0.26 -4.29 7.11 56.52 0.40 -3.89 15 7 C -0.43 -9.26 9.34 -35.72 -0.33 -9.59 15 8 H 0.09 1.79 7.98 -52.49 -0.42 1.37 15 9 C 0.14 3.24 5.76 -104.90 -0.60 2.64 15 10 C -0.18 -4.55 8.25 -38.94 -0.32 -4.87 15 11 C 0.07 1.71 6.81 -80.53 -0.55 1.16 15 12 N 0.00 -0.06 4.98 33.68 0.17 0.10 15 13 O -0.20 -5.00 19.03 -31.57 -0.60 -5.60 15 14 O -0.21 -5.35 19.05 -31.57 -0.60 -5.95 15 15 C -0.18 -4.41 9.59 -38.91 -0.37 -4.78 15 16 C 0.08 1.93 7.23 -84.74 -0.61 1.31 15 17 N -0.50 -10.34 11.30 -12.04 -0.14 -10.47 15 18 C 0.22 3.47 12.98 -89.65 -1.16 2.31 15 19 N -0.58 -9.62 6.16 -10.22 -0.06 -9.68 15 20 H 0.42 5.42 8.96 -40.82 -0.37 5.05 15 21 C -0.01 -0.26 7.29 -81.81 -0.60 -0.85 15 22 H 0.30 5.92 8.27 -40.82 -0.34 5.58 15 23 H 0.15 3.94 5.50 -52.49 -0.29 3.65 15 24 H 0.12 2.94 7.48 -52.49 -0.39 2.55 15 25 H 0.21 2.02 8.06 -52.48 -0.42 1.60 15 LS Contribution 241.31 15.07 3.64 3.64 Total: -1.00 -28.54 241.31 -7.68 -36.22 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -1.02 Total: 8.42 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -4.63 Total: -11.37 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.58 Total: -35.44 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -1.20 Total: -11.54 kcal Atomic # 14 Polarization: 15.11 SS G_CDS: -5.04 Total: 10.07 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.54 -7.68 -36.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396103901.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.905 kcal (2) G-P(sol) polarization free energy of solvation -28.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds