Wall clock time and date at job start Mon Mar 30 2020 03:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29483 * 1 3 3 Si 1.86809 * 119.99918 * 2 1 4 4 H 1.48499 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46842 * 299.99572 * 3 2 1 6 6 H 1.48494 * 109.47097 * 59.99734 * 3 2 1 7 7 C 1.46610 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00164 * 164.56311 * 7 2 1 9 9 C 1.39549 * 119.99426 * 344.56379 * 7 2 1 10 10 C 1.41696 * 120.72779 * 335.99600 * 9 7 2 11 11 C 1.36346 * 120.13760 * 179.97438 * 10 9 7 12 12 N 1.48016 * 119.14805 * 179.97438 * 11 10 9 13 13 O 1.31696 * 119.99511 * 359.97438 * 12 11 10 14 14 O 1.31696 * 120.00064 * 179.72255 * 12 11 10 15 15 C 1.38516 * 121.70633 * 0.25575 * 11 10 9 16 16 C 1.39768 * 120.99370 * 359.48534 * 15 11 10 17 17 N 1.35842 * 133.70984 * 180.15445 * 16 15 11 18 18 C 1.30120 * 109.38050 * 180.31860 * 17 16 15 19 19 N 1.36176 * 109.96010 * 0.02562 * 18 17 16 20 20 H 0.96996 * 126.26493 * 180.02562 * 19 18 17 21 21 C 1.36509 * 107.46463 * 359.97438 * 19 18 17 22 22 H 0.97005 * 119.99557 * 359.97438 * 1 2 3 23 23 H 1.07998 * 119.93058 * 0.02562 * 10 9 7 24 24 H 1.07998 * 119.50045 * 179.72248 * 15 11 10 25 25 H 1.08004 * 125.02221 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2948 0.0000 0.0000 3 14 2.2288 1.6178 0.0000 4 1 3.6888 1.3465 -0.0006 5 1 1.8701 2.3964 -1.2126 6 1 1.8700 2.3965 1.2124 7 6 2.0279 -1.2696 0.0006 8 1 3.0787 -1.2866 -0.2484 9 6 1.3679 -2.4562 0.3228 10 6 0.1934 -2.4391 1.1154 11 6 -0.4421 -3.6057 1.4225 12 7 -1.6670 -3.5624 2.2524 13 8 -2.1291 -2.4074 2.6844 14 8 -2.2973 -4.6785 2.5546 15 6 0.0320 -4.8306 0.9828 16 6 1.1821 -4.9160 0.1932 17 7 1.8597 -5.9501 -0.3696 18 6 2.8909 -5.4897 -1.0160 19 7 2.9397 -4.1331 -0.9079 20 1 3.6093 -3.5501 -1.2985 21 6 1.8730 -3.7439 -0.1501 22 1 -0.4850 0.8401 0.0004 23 1 -0.1996 -1.5002 1.4762 24 1 -0.4973 -5.7331 1.2510 25 1 3.6035 -6.0943 -1.5575 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396103901.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:31 Heat of formation + Delta-G solvation = 61.564735 kcal Electronic energy + Delta-G solvation = -15516.366025 eV Core-core repulsion = 12691.801323 eV Total energy + Delta-G solvation = -2824.564702 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.77589 -40.17515 -37.78250 -35.80207 -35.40581 -33.85630 -31.78649 -30.45859 -27.58156 -26.97348 -23.70742 -22.70299 -22.24244 -19.96132 -19.37719 -18.82690 -18.36557 -17.26846 -16.97022 -16.83244 -15.90403 -15.54705 -14.82957 -14.61205 -14.10935 -13.65459 -13.09348 -12.91771 -12.73312 -12.53976 -12.31342 -12.13914 -11.96988 -11.81738 -11.62040 -11.16486 -10.94294 -9.64092 -9.31603 -9.04695 -6.57279 -1.52490 0.31688 0.37763 0.78521 1.34719 1.39356 1.56407 1.95926 2.06277 2.24783 2.47041 3.13771 3.49469 4.03623 4.28190 4.32468 4.42686 4.65151 4.71987 4.81360 4.91772 5.31632 5.31996 5.58170 5.79331 5.96259 6.07801 6.22816 6.40655 6.70118 7.06882 7.83663 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.011940 C = 0.007366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.413789 B = 2344.515344 C = 3800.377033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.030 3.970 3 Si 1.004 2.996 4 H -0.239 1.239 5 H -0.259 1.259 6 H -0.265 1.265 7 C -0.429 4.429 8 H 0.117 0.883 9 C 0.120 3.880 10 C -0.214 4.214 11 C 0.056 3.944 12 N -0.002 5.002 13 O -0.221 6.221 14 O -0.214 6.214 15 C -0.201 4.201 16 C 0.064 3.936 17 N -0.541 5.541 18 C 0.258 3.742 19 N -0.561 5.561 20 H 0.438 0.562 21 C -0.021 4.021 22 H 0.312 0.688 23 H 0.136 0.864 24 H 0.119 0.881 25 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.440 1.849 -5.362 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.198 4.198 3 Si 0.821 3.179 4 H -0.161 1.161 5 H -0.183 1.183 6 H -0.190 1.190 7 C -0.453 4.453 8 H 0.135 0.865 9 C 0.114 3.886 10 C -0.237 4.237 11 C -0.032 4.032 12 N 0.468 4.532 13 O -0.408 6.408 14 O -0.404 6.404 15 C -0.225 4.225 16 C -0.056 4.056 17 N -0.263 5.263 18 C -0.028 4.028 19 N -0.170 5.170 20 H 0.279 0.721 21 C -0.135 4.135 22 H 0.125 0.875 23 H 0.153 0.847 24 H 0.137 0.863 25 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 10.411 1.108 -5.611 11.879 hybrid contribution -0.368 1.482 0.269 1.551 sum 10.043 2.591 -5.342 11.667 Atomic orbital electron populations 1.69113 1.10833 1.33712 1.24043 1.28658 0.95315 1.05671 0.90153 0.84814 0.79965 0.73695 0.79417 1.16143 1.18302 1.19012 1.21202 0.98075 0.89743 1.36270 0.86470 1.17491 0.90943 0.89469 0.90714 1.20474 1.01055 0.95485 1.06728 1.19699 0.85653 0.97362 1.00445 1.50987 1.02771 1.01395 0.98023 1.96164 1.72188 1.13412 1.59035 1.96122 1.61116 1.18854 1.64350 1.18873 1.00407 0.94534 1.08654 1.18291 0.96507 0.89703 1.01076 1.70356 1.08750 1.30744 1.16440 1.26370 0.97263 0.80902 0.98292 1.42541 1.22925 1.09136 1.42427 0.72084 1.20408 0.94337 0.95849 1.02864 0.87501 0.84651 0.86331 0.71245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -33.76 10.94 23.23 0.25 -33.51 15 2 C 0.03 1.20 5.37 87.23 0.47 1.67 15 3 Si 1.00 29.03 29.67 68.60 2.04 31.07 15 4 H -0.24 -6.34 7.11 99.48 0.71 -5.63 15 5 H -0.26 -7.17 7.11 99.48 0.71 -6.46 15 6 H -0.27 -7.83 7.11 99.48 0.71 -7.12 15 7 C -0.43 -17.96 9.34 24.77 0.23 -17.73 15 8 H 0.12 4.18 7.98 -2.91 -0.02 4.15 15 9 C 0.12 5.61 5.76 -20.04 -0.12 5.50 15 10 C -0.21 -11.07 8.25 22.68 0.19 -10.89 15 11 C 0.06 2.94 6.81 36.00 0.25 3.19 15 12 N 0.00 -0.09 4.98 -47.36 -0.24 -0.33 15 13 O -0.22 -11.89 19.03 3.52 0.07 -11.83 15 14 O -0.21 -11.11 19.05 3.52 0.07 -11.04 15 15 C -0.20 -10.07 9.59 22.71 0.22 -9.86 15 16 C 0.06 2.95 7.23 39.40 0.29 3.24 15 17 N -0.54 -21.12 11.30 -192.01 -2.17 -23.29 15 18 C 0.26 6.97 12.98 180.01 2.34 9.31 15 19 N -0.56 -16.60 6.16 -186.23 -1.15 -17.75 15 20 H 0.44 9.31 8.96 -92.71 -0.83 8.48 15 21 C -0.02 -0.89 7.29 40.99 0.30 -0.59 15 22 H 0.31 12.27 8.27 -92.70 -0.77 11.51 15 23 H 0.14 7.36 5.50 -2.91 -0.02 7.34 15 24 H 0.12 5.87 7.48 -2.91 -0.02 5.85 15 25 H 0.27 3.40 8.06 -2.91 -0.02 3.38 15 Total: -1.00 -64.81 241.31 3.46 -61.35 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.44 Total: 21.49 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 4.15 Total: -16.16 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -3.30 Total: -74.88 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.13 Total: -22.87 kcal Atomic # 14 Polarization: 29.03 SS G_CDS: 2.04 Total: 31.07 kcal Total: -64.81 3.46 -61.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396103901.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.912 kcal (2) G-P(sol) polarization free energy of solvation -64.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds