Wall clock time and date at job start Mon Mar 30 2020 03:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29515 * 1 3 3 Si 1.86794 * 120.00011 * 2 1 4 4 H 1.48507 * 109.47102 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47205 * 119.99403 * 3 2 1 6 6 H 1.48501 * 109.47284 * 239.99674 * 3 2 1 7 7 C 1.46544 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99538 * 156.03789 * 7 2 1 9 9 C 1.39664 * 120.00045 * 336.03811 * 7 2 1 10 10 C 1.46289 * 120.36694 * 334.93592 * 9 7 2 11 11 C 1.35463 * 119.77125 * 179.71362 * 10 9 7 12 12 C 1.40871 * 120.34392 * 0.55152 * 11 10 9 13 13 N 1.34432 * 132.78894 * 179.74912 * 12 11 10 14 14 C 1.30618 * 109.92546 * 179.97438 * 13 12 11 15 15 N 1.34952 * 110.31151 * 359.97438 * 14 13 12 16 16 H 0.96997 * 126.42397 * 180.02562 * 15 14 13 17 17 C 1.38579 * 107.14818 * 359.97438 * 15 14 13 18 18 C 1.37514 * 133.49603 * 180.02562 * 17 15 14 19 19 N 1.48024 * 120.24268 * 359.94085 * 18 17 15 20 20 O 1.31705 * 119.99988 * 270.02217 * 19 18 17 21 21 O 1.31698 * 119.99964 * 90.01699 * 19 18 17 22 22 H 0.97003 * 119.99911 * 174.92281 * 1 2 3 23 23 H 1.07997 * 120.11840 * 359.97438 * 10 9 7 24 24 H 1.08000 * 119.82509 * 180.25317 * 11 10 9 25 25 H 1.07997 * 124.84504 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2952 0.0000 0.0000 3 14 2.2291 1.6177 0.0000 4 1 1.2641 2.7465 -0.0006 5 1 3.0828 1.6964 1.2126 6 1 3.0830 1.6964 -1.2125 7 6 2.0279 -1.2691 0.0006 8 1 3.0380 -1.3095 -0.3793 9 6 1.4198 -2.4263 0.4923 10 6 0.3384 -2.3338 1.4732 11 6 -0.2468 -3.4638 1.9377 12 6 0.1885 -4.7265 1.4898 13 7 -0.1987 -5.9811 1.7783 14 6 0.5171 -6.8356 1.0975 15 7 1.4127 -6.1858 0.3249 16 1 2.0591 -6.5920 -0.2734 17 6 1.2349 -4.8294 0.5459 18 6 1.8454 -3.7015 0.0497 19 7 2.9422 -3.8204 -0.9372 20 8 4.1904 -3.9116 -0.5267 21 8 2.6700 -3.8351 -2.2256 22 1 -0.4850 -0.8368 -0.0743 23 1 0.0049 -1.3679 1.8226 24 1 -1.0480 -3.3964 2.6588 25 1 0.4079 -7.9089 1.1460 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396109934.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:24 Heat of formation + Delta-G solvation = 69.690430 kcal Electronic energy + Delta-G solvation = -15759.724299 eV Core-core repulsion = 12935.511953 eV Total energy + Delta-G solvation = -2824.212346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.31529 -38.03800 -36.53378 -33.89932 -33.39248 -32.51647 -30.03708 -29.04018 -26.16242 -24.63068 -21.90181 -21.59490 -20.56323 -18.85240 -17.89074 -17.25242 -16.91772 -15.43840 -15.07051 -14.51441 -14.39559 -14.29137 -13.88879 -13.03522 -12.62141 -12.06759 -11.53310 -11.36457 -10.93613 -10.72315 -10.53873 -10.47561 -10.22838 -10.13037 -9.82606 -9.67454 -9.42832 -8.20268 -7.95820 -7.75595 -5.22648 0.78708 1.78034 2.28714 2.41603 2.80157 2.82774 3.05395 3.33110 3.45742 3.52923 3.98580 4.64409 4.96811 5.35305 5.74515 5.95055 6.01228 6.06675 6.28255 6.60111 6.79168 6.82906 7.03018 7.17122 7.19191 7.41498 7.67843 7.76616 7.88140 7.92870 8.57516 9.13774 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.028521 B = 0.010129 C = 0.007971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.488989 B = 2763.675336 C = 3511.969056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.036 3.964 3 Si 1.079 2.921 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.449 4.449 8 H 0.093 0.907 9 C 0.132 3.868 10 C -0.173 4.173 11 C -0.021 4.021 12 C -0.057 4.057 13 N -0.468 5.468 14 C 0.174 3.826 15 N -0.606 5.606 16 H 0.414 0.586 17 C 0.153 3.847 18 C -0.199 4.199 19 N 0.016 4.984 20 O -0.194 6.194 21 O -0.181 6.181 22 H 0.312 0.688 23 H 0.132 0.868 24 H 0.119 0.881 25 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -1.457 1.410 2.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.340 5.340 2 C -0.197 4.197 3 Si 0.898 3.102 4 H -0.187 1.187 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.473 4.473 8 H 0.111 0.889 9 C 0.126 3.874 10 C -0.194 4.194 11 C -0.041 4.041 12 C -0.177 4.177 13 N -0.187 5.187 14 C -0.109 4.109 15 N -0.218 5.218 16 H 0.251 0.749 17 C 0.040 3.960 18 C -0.287 4.287 19 N 0.509 4.491 20 O -0.396 6.396 21 O -0.386 6.386 22 H 0.128 0.872 23 H 0.150 0.850 24 H 0.137 0.863 25 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.429 0.011 2.615 2.980 hybrid contribution 1.509 -2.071 -1.285 2.867 sum 0.080 -2.060 1.330 2.454 Atomic orbital electron populations 1.70018 1.08682 1.35807 1.19496 1.29133 0.95234 1.04981 0.90354 0.83448 0.75810 0.71565 0.79424 1.18742 1.18724 1.18857 1.22209 1.01968 0.93072 1.30094 0.88851 1.17781 0.90894 0.88440 0.90248 1.21828 0.99739 0.97806 1.00029 1.19777 0.97683 0.89017 0.97584 1.18276 1.01553 0.92251 1.05591 1.69725 1.25721 0.99416 1.23847 1.24418 0.92310 0.98795 0.95390 1.42860 1.33876 1.05276 1.39767 0.74929 1.17953 0.97748 0.81999 0.98333 1.18253 1.05509 0.93407 1.11509 1.50409 1.03389 0.92292 1.03004 1.96152 1.03089 1.54974 1.85344 1.96152 1.91182 1.54671 0.96617 0.87177 0.85014 0.86306 0.78220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -15.94 12.32 55.99 0.69 -15.25 15 2 C 0.04 0.77 5.17 -15.18 -0.08 0.69 15 3 Si 1.08 18.25 30.08 -169.99 -5.11 13.14 15 4 H -0.26 -4.31 7.11 56.52 0.40 -3.90 15 5 H -0.26 -4.27 7.11 56.52 0.40 -3.87 15 6 H -0.26 -4.38 7.11 56.52 0.40 -3.98 15 7 C -0.45 -10.92 8.91 -35.70 -0.32 -11.24 15 8 H 0.09 2.36 7.68 -52.49 -0.40 1.95 15 9 C 0.13 3.26 5.49 -104.88 -0.58 2.68 15 10 C -0.17 -3.84 8.07 -37.34 -0.30 -4.14 15 11 C -0.02 -0.45 10.02 -39.58 -0.40 -0.84 15 12 C -0.06 -1.29 7.22 -84.57 -0.61 -1.90 15 13 N -0.47 -9.80 11.22 -12.01 -0.13 -9.94 15 14 C 0.17 3.04 12.93 -90.36 -1.17 1.87 15 15 N -0.61 -11.59 6.22 -11.90 -0.07 -11.66 15 16 H 0.41 6.85 8.96 -40.82 -0.37 6.49 15 17 C 0.15 3.57 7.18 -83.91 -0.60 2.97 15 18 C -0.20 -5.01 6.32 -78.95 -0.50 -5.51 15 19 N 0.02 0.41 4.08 34.44 0.14 0.55 15 20 O -0.19 -4.89 19.97 -31.57 -0.63 -5.52 15 21 O -0.18 -4.60 19.97 -31.57 -0.63 -5.23 15 22 H 0.31 7.07 6.58 -40.82 -0.27 6.80 15 23 H 0.13 2.76 6.53 -52.49 -0.34 2.42 15 24 H 0.12 2.19 8.06 -52.49 -0.42 1.77 15 25 H 0.20 2.40 8.06 -52.49 -0.42 1.97 15 LS Contribution 242.38 15.07 3.65 3.65 Total: -1.00 -28.36 242.38 -7.67 -36.03 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -1.02 Total: 9.65 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -4.55 Total: -15.42 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.62 Total: -36.30 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -1.26 Total: -10.75 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.11 Total: 13.14 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.36 -7.67 -36.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396109934.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.719 kcal (2) G-P(sol) polarization free energy of solvation -28.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds