Wall clock time and date at job start Mon Mar 30 2020 03:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29483 * 1 3 3 Si 1.86797 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47092 * 269.99715 * 3 2 1 5 5 H 1.48491 * 109.47613 * 30.00003 * 3 2 1 6 6 H 1.48506 * 109.47077 * 150.00153 * 3 2 1 7 7 C 1.46591 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00120 * 192.89025 * 7 2 1 9 9 C 1.39910 * 119.99901 * 12.89267 * 7 2 1 10 10 C 1.41193 * 120.06465 * 25.24787 * 9 7 2 11 11 C 1.38662 * 119.38388 * 179.97438 * 10 9 7 12 12 N 1.36048 * 133.44024 * 179.97438 * 11 10 9 13 13 C 1.29985 * 109.41720 * 180.02562 * 12 11 10 14 14 N 1.36278 * 110.21432 * 359.97438 * 13 12 11 15 15 H 0.96998 * 126.23109 * 179.97438 * 14 13 12 16 16 C 1.37134 * 107.55239 * 359.97438 * 14 13 12 17 17 C 1.39792 * 133.66414 * 179.97438 * 16 14 13 18 18 N 1.48018 * 119.82735 * 0.35657 * 17 16 14 19 19 O 1.31696 * 119.99722 * 179.72480 * 18 17 16 20 20 O 1.31698 * 120.00054 * 359.72861 * 18 17 16 21 21 C 1.35768 * 120.34637 * 180.08666 * 17 16 14 22 22 H 0.97000 * 120.00298 * 0.02562 * 1 2 3 23 23 H 1.08001 * 120.30446 * 359.96211 * 10 9 7 24 24 H 1.08007 * 124.89686 * 180.02562 * 13 12 11 25 25 H 1.07995 * 119.84671 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2948 0.0000 0.0000 3 14 2.2288 1.6177 0.0000 4 1 2.4763 2.0464 -1.4001 5 1 1.4264 2.6527 0.7000 6 1 3.5264 1.4402 0.7000 7 6 2.0278 -1.2695 0.0006 8 1 3.0873 -1.2812 0.2092 9 6 1.3547 -2.4660 -0.2693 10 6 0.1700 -2.4535 -1.0373 11 6 -0.4854 -3.6476 -1.2966 12 7 -1.6161 -3.9640 -1.9839 13 6 -1.8087 -5.2484 -1.9310 14 7 -0.8180 -5.8438 -1.2091 15 1 -0.7344 -6.7923 -1.0238 16 6 0.0394 -4.8582 -0.7921 17 6 1.2136 -4.8577 -0.0336 18 7 1.7560 -6.1338 0.4844 19 8 2.8650 -6.1378 1.1948 20 8 1.1297 -7.2651 0.2349 21 6 1.8622 -3.6935 0.2259 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2221 -1.5224 -1.4191 24 1 -2.6344 -5.7690 -2.3934 25 1 2.7685 -3.7024 0.8131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396112825.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:45 Heat of formation + Delta-G solvation = 77.517622 kcal Electronic energy + Delta-G solvation = -15525.494362 eV Core-core repulsion = 12701.621428 eV Total energy + Delta-G solvation = -2823.872933 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.36630 -38.31806 -36.54421 -33.78536 -33.69169 -32.38016 -30.08540 -29.09809 -25.83821 -25.18621 -22.14074 -21.36395 -20.55816 -18.28042 -17.91990 -17.20159 -16.17829 -15.82603 -15.40306 -15.29061 -14.32585 -14.14509 -13.45962 -13.08739 -12.35806 -11.84087 -11.55690 -11.25560 -11.06851 -10.72383 -10.64505 -10.49104 -10.32751 -10.13219 -10.08837 -9.64362 -9.44540 -7.87420 -7.71816 -7.23113 -4.69846 0.11270 1.90214 1.97571 2.33769 2.86427 2.88284 2.90774 3.41917 3.54872 3.62434 4.12628 4.86339 5.00534 5.32986 5.61697 5.89757 6.07627 6.20546 6.23264 6.54494 6.69734 6.92614 7.22669 7.39837 7.45010 7.56547 7.88253 8.00723 8.22207 8.37343 8.50186 9.66519 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.028685 B = 0.008801 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.895369 B = 3180.524186 C = 4088.530614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.072 3.928 3 Si 0.926 3.074 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.452 4.452 8 H 0.093 0.907 9 C 0.087 3.913 10 C -0.088 4.088 11 C 0.075 3.925 12 N -0.498 5.498 13 C 0.243 3.757 14 N -0.591 5.591 15 H 0.423 0.577 16 C -0.005 4.005 17 C 0.027 3.973 18 N 0.009 4.991 19 O -0.208 6.208 20 O -0.247 6.247 21 C -0.108 4.108 22 H 0.295 0.705 23 H 0.146 0.854 24 H 0.208 0.792 25 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 -1.236 -2.284 3.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.154 4.154 3 Si 0.749 3.251 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.480 4.480 8 H 0.111 0.889 9 C 0.082 3.918 10 C -0.111 4.111 11 C -0.041 4.041 12 N -0.220 5.220 13 C -0.045 4.045 14 N -0.208 5.208 15 H 0.263 0.737 16 C -0.116 4.116 17 C -0.064 4.064 18 N 0.472 4.528 19 O -0.396 6.396 20 O -0.425 6.425 21 C -0.129 4.129 22 H 0.108 0.892 23 H 0.164 0.836 24 H 0.225 0.775 25 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.570 0.010 -2.871 3.853 hybrid contribution 0.832 -0.914 0.723 1.432 sum -1.738 -0.904 -2.148 2.908 Atomic orbital electron populations 1.69031 1.08797 1.31239 1.28707 1.27485 0.94629 1.02191 0.91123 0.85997 0.80566 0.78627 0.79903 1.18669 1.19841 1.17885 1.20546 0.96507 0.88709 1.42219 0.88852 1.17163 0.92301 0.90886 0.91472 1.21122 0.96619 0.95184 0.98173 1.18984 0.93343 0.92171 0.99594 1.70534 1.16785 1.11837 1.22857 1.25166 0.93644 0.89796 0.95868 1.42929 1.22028 1.10001 1.45813 0.73663 1.18084 0.95128 0.91022 1.07325 1.18952 0.97461 0.81031 1.08973 1.50777 1.00340 1.04362 0.97364 1.96193 1.09434 1.95835 1.38130 1.96080 1.60872 1.19093 1.66451 1.20962 1.01405 0.89799 1.00753 0.89213 0.83618 0.77515 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.02 10.84 55.99 0.61 -16.41 15 2 C 0.07 1.56 5.39 -15.17 -0.08 1.48 15 3 Si 0.93 16.12 29.66 -169.99 -5.04 11.08 15 4 H -0.26 -4.53 7.11 56.52 0.40 -4.13 15 5 H -0.27 -4.67 7.11 56.52 0.40 -4.27 15 6 H -0.26 -4.42 7.11 56.52 0.40 -4.02 15 7 C -0.45 -10.39 9.29 -35.59 -0.33 -10.72 15 8 H 0.09 2.02 7.97 -52.49 -0.42 1.60 15 9 C 0.09 2.07 5.62 -106.81 -0.60 1.47 15 10 C -0.09 -2.12 8.81 -38.30 -0.34 -2.46 15 11 C 0.08 1.74 7.20 -84.69 -0.61 1.13 15 12 N -0.50 -10.38 11.30 -12.03 -0.14 -10.51 15 13 C 0.24 3.97 12.96 -89.66 -1.16 2.81 15 14 N -0.59 -10.62 5.97 -11.52 -0.07 -10.69 15 15 H 0.42 6.66 7.44 -40.82 -0.30 6.36 15 16 C 0.00 -0.10 6.89 -83.76 -0.58 -0.68 15 17 C 0.03 0.63 6.85 -80.25 -0.55 0.08 15 18 N 0.01 0.20 4.98 33.81 0.17 0.36 15 19 O -0.21 -4.78 19.09 -31.57 -0.60 -5.38 15 20 O -0.25 -5.38 17.89 -31.57 -0.56 -5.95 15 21 C -0.11 -2.46 9.25 -39.12 -0.36 -2.82 15 22 H 0.30 5.93 8.27 -40.82 -0.34 5.60 15 23 H 0.15 3.59 6.04 -52.49 -0.32 3.28 15 24 H 0.21 2.14 8.06 -52.48 -0.42 1.72 15 25 H 0.14 2.97 7.50 -52.49 -0.39 2.57 15 LS Contribution 238.60 15.07 3.60 3.60 Total: -1.00 -27.27 238.60 -7.64 -34.92 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -0.99 Total: 8.71 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -4.61 Total: -9.72 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.57 Total: -37.25 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -1.17 Total: -11.33 kcal Atomic # 14 Polarization: 16.12 SS G_CDS: -5.04 Total: 11.08 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.27 -7.64 -34.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396112825.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.435 kcal (2) G-P(sol) polarization free energy of solvation -27.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds