Wall clock time and date at job start Mon Mar 30 2020 03:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29483 * 1 3 3 Si 1.86797 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47092 * 269.99715 * 3 2 1 5 5 H 1.48491 * 109.47613 * 30.00003 * 3 2 1 6 6 H 1.48506 * 109.47077 * 150.00153 * 3 2 1 7 7 C 1.46591 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00120 * 192.89025 * 7 2 1 9 9 C 1.39910 * 119.99901 * 12.89267 * 7 2 1 10 10 C 1.41193 * 120.06465 * 25.24787 * 9 7 2 11 11 C 1.38662 * 119.38388 * 179.97438 * 10 9 7 12 12 N 1.36048 * 133.44024 * 179.97438 * 11 10 9 13 13 C 1.29985 * 109.41720 * 180.02562 * 12 11 10 14 14 N 1.36278 * 110.21432 * 359.97438 * 13 12 11 15 15 H 0.96998 * 126.23109 * 179.97438 * 14 13 12 16 16 C 1.37134 * 107.55239 * 359.97438 * 14 13 12 17 17 C 1.39792 * 133.66414 * 179.97438 * 16 14 13 18 18 N 1.48018 * 119.82735 * 0.35657 * 17 16 14 19 19 O 1.31696 * 119.99722 * 179.72480 * 18 17 16 20 20 O 1.31698 * 120.00054 * 359.72861 * 18 17 16 21 21 C 1.35768 * 120.34637 * 180.08666 * 17 16 14 22 22 H 0.97000 * 120.00298 * 0.02562 * 1 2 3 23 23 H 1.08001 * 120.30446 * 359.96211 * 10 9 7 24 24 H 1.08007 * 124.89686 * 180.02562 * 13 12 11 25 25 H 1.07995 * 119.84671 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2948 0.0000 0.0000 3 14 2.2288 1.6177 0.0000 4 1 2.4763 2.0464 -1.4001 5 1 1.4264 2.6527 0.7000 6 1 3.5264 1.4402 0.7000 7 6 2.0278 -1.2695 0.0006 8 1 3.0873 -1.2812 0.2092 9 6 1.3547 -2.4660 -0.2693 10 6 0.1700 -2.4535 -1.0373 11 6 -0.4854 -3.6476 -1.2966 12 7 -1.6161 -3.9640 -1.9839 13 6 -1.8087 -5.2484 -1.9310 14 7 -0.8180 -5.8438 -1.2091 15 1 -0.7344 -6.7923 -1.0238 16 6 0.0394 -4.8582 -0.7921 17 6 1.2136 -4.8577 -0.0336 18 7 1.7560 -6.1338 0.4844 19 8 2.8650 -6.1378 1.1948 20 8 1.1297 -7.2651 0.2349 21 6 1.8622 -3.6935 0.2259 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2221 -1.5224 -1.4191 24 1 -2.6344 -5.7690 -2.3934 25 1 2.7685 -3.7024 0.8131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396112825.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:45 Heat of formation + Delta-G solvation = 62.140237 kcal Electronic energy + Delta-G solvation = -15526.161175 eV Core-core repulsion = 12701.621428 eV Total energy + Delta-G solvation = -2824.539747 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.95080 -40.08774 -38.25818 -35.54812 -35.41257 -33.98430 -31.79474 -30.75933 -27.60352 -26.88315 -23.71985 -23.06528 -22.18538 -19.98989 -19.58937 -18.92687 -17.87795 -17.47272 -17.18314 -16.85847 -15.92893 -15.75770 -15.03646 -14.56501 -13.98961 -13.49578 -13.15075 -12.83787 -12.75106 -12.49111 -12.26624 -12.21519 -11.91892 -11.89754 -11.70694 -11.22825 -11.05638 -9.57283 -9.40976 -8.87240 -6.45859 -1.66300 0.19197 0.25445 0.63600 1.42784 1.46101 1.57021 1.89856 2.08421 2.16706 2.47698 3.24486 3.45807 3.83502 3.95941 4.17483 4.44950 4.48676 4.66076 4.86911 5.00430 5.22539 5.52949 5.65616 5.67506 5.80801 6.20424 6.48563 6.56492 6.64061 6.96071 8.05127 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.028685 B = 0.008801 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.895369 B = 3180.524186 C = 4088.530614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.038 3.962 3 Si 0.998 3.002 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.253 1.253 7 C -0.479 4.479 8 H 0.099 0.901 9 C 0.073 3.927 10 C -0.109 4.109 11 C 0.062 3.938 12 N -0.537 5.537 13 C 0.281 3.719 14 N -0.584 5.584 15 H 0.436 0.564 16 C -0.019 4.019 17 C 0.022 3.978 18 N 0.006 4.994 19 O -0.237 6.237 20 O -0.218 6.218 21 C -0.125 4.125 22 H 0.305 0.695 23 H 0.132 0.868 24 H 0.274 0.726 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.524 -1.605 -2.897 4.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.176 1.176 7 C -0.506 4.506 8 H 0.117 0.883 9 C 0.067 3.933 10 C -0.132 4.132 11 C -0.054 4.054 12 N -0.260 5.260 13 C -0.006 4.006 14 N -0.201 5.201 15 H 0.278 0.722 16 C -0.131 4.131 17 C -0.069 4.069 18 N 0.468 4.532 19 O -0.416 6.416 20 O -0.404 6.404 21 C -0.146 4.146 22 H 0.118 0.882 23 H 0.150 0.850 24 H 0.290 0.710 25 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.393 -0.359 -3.439 4.844 hybrid contribution 0.919 -0.941 0.833 1.557 sum -2.473 -1.300 -2.606 3.821 Atomic orbital electron populations 1.69063 1.10223 1.32751 1.28596 1.28352 0.95289 1.04937 0.89998 0.84943 0.79166 0.74175 0.80009 1.18191 1.18907 1.17590 1.20893 0.97032 0.89621 1.43010 0.88344 1.17392 0.92581 0.91572 0.91713 1.21054 0.97459 0.95322 0.99392 1.19135 0.94182 0.92200 0.99841 1.70560 1.16623 1.14332 1.24466 1.26456 0.93158 0.88606 0.92393 1.43003 1.21492 1.10101 1.45534 0.72164 1.18132 0.95456 0.91998 1.07482 1.19080 0.97832 0.80942 1.09077 1.50796 1.00425 1.04416 0.97518 1.96199 1.10022 1.95895 1.39488 1.96042 1.60285 1.19002 1.65091 1.20973 1.02007 0.89881 1.01746 0.88208 0.85049 0.71047 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.83 10.84 23.22 0.25 -35.58 15 2 C 0.04 1.66 5.39 87.22 0.47 2.13 15 3 Si 1.00 32.57 29.66 68.60 2.03 34.61 15 4 H -0.26 -8.18 7.11 99.48 0.71 -7.48 15 5 H -0.26 -8.21 7.11 99.48 0.71 -7.50 15 6 H -0.25 -8.07 7.11 99.48 0.71 -7.36 15 7 C -0.48 -22.58 9.29 24.86 0.23 -22.35 15 8 H 0.10 4.37 7.97 -2.91 -0.02 4.35 15 9 C 0.07 3.57 5.62 -21.28 -0.12 3.45 15 10 C -0.11 -5.42 8.81 23.10 0.20 -5.22 15 11 C 0.06 2.88 7.20 39.33 0.28 3.16 15 12 N -0.54 -21.49 11.30 -191.97 -2.17 -23.66 15 13 C 0.28 8.12 12.96 180.01 2.33 10.45 15 14 N -0.58 -19.29 5.97 -190.35 -1.14 -20.43 15 15 H 0.44 12.18 7.44 -92.71 -0.69 11.49 15 16 C -0.02 -0.81 6.89 39.43 0.27 -0.54 15 17 C 0.02 1.02 6.85 36.18 0.25 1.27 15 18 N 0.01 0.27 4.98 -46.93 -0.23 0.04 15 19 O -0.24 -10.95 19.09 3.52 0.07 -10.88 15 20 O -0.22 -9.09 17.89 3.52 0.06 -9.03 15 21 C -0.12 -5.87 9.25 22.57 0.21 -5.66 15 22 H 0.31 12.31 8.27 -92.71 -0.77 11.55 15 23 H 0.13 6.76 6.04 -2.91 -0.02 6.74 15 24 H 0.27 3.88 8.06 -2.91 -0.02 3.86 15 25 H 0.14 6.32 7.50 -2.91 -0.02 6.30 15 Total: -1.00 -59.88 238.60 3.59 -56.29 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.58 Total: 21.94 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 4.13 Total: -13.30 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -3.29 Total: -79.63 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.13 Total: -19.91 kcal Atomic # 14 Polarization: 32.57 SS G_CDS: 2.03 Total: 34.61 kcal Total: -59.88 3.59 -56.29 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396112825.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.429 kcal (2) G-P(sol) polarization free energy of solvation -59.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds