Wall clock time and date at job start Mon Mar 30 2020 03:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86798 * 120.00196 * 2 1 4 4 H 1.48499 * 109.46916 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47204 * 119.99964 * 3 2 1 6 6 H 1.48501 * 109.47102 * 239.99882 * 3 2 1 7 7 C 1.40344 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99958 * 154.28821 * 7 2 1 9 9 C 1.40435 * 120.00142 * 334.29257 * 7 2 1 10 10 C 1.40819 * 120.70926 * 334.78883 * 9 7 2 11 11 C 1.37662 * 120.10062 * 179.97438 * 10 9 7 12 12 C 1.38462 * 121.51789 * 0.02562 * 11 10 9 13 13 C 1.38712 * 121.04189 * 0.02569 * 12 11 10 14 14 O 1.34990 * 133.91391 * 180.02562 * 13 12 11 15 15 C 1.34789 * 107.81013 * 179.16732 * 14 13 12 16 16 C 1.47579 * 125.06917 * 180.02562 * 15 14 13 17 17 O 1.21484 * 119.99884 * 180.70769 * 16 15 14 18 18 O 1.34798 * 119.99780 * 0.71325 * 16 15 14 19 19 N 1.31182 * 109.86222 * 0.69029 * 15 14 13 20 20 C 1.33696 * 108.99776 * 359.40384 * 19 15 14 21 21 H 0.96997 * 120.00391 * 174.39299 * 1 2 3 22 22 H 1.07997 * 119.95357 * 359.97438 * 10 9 7 23 23 H 1.08002 * 119.24215 * 180.02562 * 11 10 9 24 24 H 1.08001 * 119.48276 * 180.02562 * 12 11 10 25 25 H 0.96699 * 116.99735 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2753 2.7464 -0.0006 5 1 3.0940 1.6963 1.2125 6 1 3.0941 1.6963 -1.2125 7 6 2.0080 -1.2154 0.0005 8 1 3.0077 -1.2619 -0.4052 9 6 1.4100 -2.3712 0.5286 10 6 0.3959 -2.2761 1.5010 11 6 -0.1820 -3.4173 2.0097 12 6 0.2098 -4.6767 1.5884 13 6 1.2041 -4.8345 0.6341 14 8 1.7766 -5.9068 0.0470 15 6 2.6914 -5.4551 -0.8339 16 6 3.5411 -6.3087 -1.6866 17 8 4.3471 -5.8024 -2.4415 18 8 3.4229 -7.6502 -1.6279 19 7 2.7237 -4.1439 -0.8099 20 6 1.8243 -3.7025 0.0754 21 1 -0.4850 -0.8360 -0.0821 22 1 0.0710 -1.3065 1.8482 23 1 -0.9589 -3.3282 2.7547 24 1 -0.2662 -5.5500 2.0094 25 1 4.0006 -8.1675 -2.2056 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396123326.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:41 Heat of formation + Delta-G solvation = -87.196529 kcal Electronic energy + Delta-G solvation = -15392.036436 eV Core-core repulsion = 12528.728210 eV Total energy + Delta-G solvation = -2863.308226 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.96244 -41.13711 -38.80668 -37.38715 -35.96056 -35.55125 -31.39507 -30.92870 -27.75713 -26.36845 -23.68608 -22.94753 -22.32043 -20.09804 -19.79724 -18.65160 -18.31532 -17.93648 -17.13787 -16.40570 -16.09084 -15.87204 -15.06174 -14.75370 -14.63185 -14.12959 -13.31498 -12.86379 -12.85180 -12.80171 -12.51407 -12.33166 -12.26360 -12.08663 -11.88727 -11.35026 -11.10134 -9.80970 -9.74124 -9.37271 -6.77599 -0.57443 0.62836 0.82951 1.13595 1.49348 1.57716 1.82004 1.91198 1.97559 2.19141 2.36880 3.14241 3.63010 3.91879 4.10313 4.41248 4.44368 4.67643 4.99208 5.05203 5.12581 5.22685 5.36412 5.49203 5.62490 5.79120 5.93682 6.21315 6.33728 6.65285 6.87567 7.58536 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.029490 B = 0.008103 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.261256 B = 3454.883078 C = 4297.585722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.006 3.994 3 Si 1.121 2.879 4 H -0.257 1.257 5 H -0.255 1.255 6 H -0.260 1.260 7 C -0.444 4.444 8 H 0.084 0.916 9 C 0.115 3.885 10 C -0.272 4.272 11 C -0.004 4.004 12 C -0.276 4.276 13 C 0.078 3.922 14 O -0.209 6.209 15 C 0.054 3.946 16 C 0.610 3.390 17 O -0.510 6.510 18 O -0.486 6.486 19 N -0.383 5.383 20 C -0.121 4.121 21 H 0.299 0.701 22 H 0.122 0.878 23 H 0.155 0.845 24 H 0.135 0.865 25 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.918 -3.787 1.356 4.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.218 4.218 3 Si 0.935 3.065 4 H -0.181 1.181 5 H -0.179 1.179 6 H -0.185 1.185 7 C -0.468 4.468 8 H 0.102 0.898 9 C 0.110 3.890 10 C -0.292 4.292 11 C -0.023 4.023 12 C -0.296 4.296 13 C 0.026 3.974 14 O -0.102 6.102 15 C -0.145 4.145 16 C 0.452 3.548 17 O -0.398 6.398 18 O -0.300 6.300 19 N -0.116 5.116 20 C -0.246 4.246 21 H 0.113 0.887 22 H 0.140 0.860 23 H 0.173 0.827 24 H 0.153 0.847 25 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges 1.058 -1.619 1.011 2.182 hybrid contribution 0.114 -2.758 -0.216 2.769 sum 1.171 -4.377 0.795 4.601 Atomic orbital electron populations 1.70475 1.08692 1.34789 1.22668 1.28955 0.95570 1.07398 0.89900 0.82961 0.74999 0.68908 0.79678 1.18083 1.17906 1.18457 1.21318 1.02846 0.94504 1.28172 0.89786 1.18252 0.91585 0.88036 0.91085 1.21009 1.05410 0.98854 1.03892 1.20837 0.95802 0.90013 0.95600 1.19314 1.04866 0.98901 1.06555 1.20945 0.96393 0.83734 0.96302 1.84427 1.45494 1.33890 1.46350 1.23490 1.00486 0.88685 1.01797 1.17652 0.78162 0.81171 0.77769 1.90926 1.35352 1.75769 1.37798 1.84544 1.64193 1.15926 1.65335 1.69416 1.17635 1.08362 1.16198 1.21021 1.03457 0.96268 1.03818 0.88735 0.86030 0.82720 0.84749 0.68927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -34.54 12.32 21.90 0.27 -34.27 15 2 C 0.01 0.25 4.95 85.38 0.42 0.67 15 3 Si 1.12 37.19 30.01 68.60 2.06 39.25 15 4 H -0.26 -8.10 7.11 99.48 0.71 -7.40 15 5 H -0.25 -7.96 7.11 99.48 0.71 -7.25 15 6 H -0.26 -8.30 7.11 99.48 0.71 -7.60 15 7 C -0.44 -22.41 9.02 23.32 0.21 -22.20 15 8 H 0.08 4.36 7.97 -2.91 -0.02 4.34 15 9 C 0.12 5.97 5.46 -19.93 -0.11 5.86 15 10 C -0.27 -12.41 7.96 22.77 0.18 -12.23 15 11 C 0.00 -0.16 9.94 22.19 0.22 0.06 15 12 C -0.28 -11.62 10.02 22.44 0.22 -11.39 15 13 C 0.08 3.79 7.43 22.97 0.17 3.96 15 14 O -0.21 -9.82 10.81 -13.67 -0.15 -9.96 15 15 C 0.05 2.56 8.06 87.26 0.70 3.27 15 16 C 0.61 23.23 8.34 70.29 0.59 23.82 15 17 O -0.51 -21.25 17.85 19.89 0.35 -20.90 15 18 O -0.49 -12.88 13.44 -55.48 -0.75 -13.63 15 19 N -0.38 -20.48 11.22 -292.67 -3.28 -23.76 15 20 C -0.12 -6.49 7.20 41.64 0.30 -6.19 15 21 H 0.30 14.38 6.69 -92.71 -0.62 13.76 15 22 H 0.12 5.42 6.50 -2.91 -0.02 5.40 15 23 H 0.16 4.71 8.06 -2.91 -0.02 4.68 15 24 H 0.13 4.78 8.06 -2.91 -0.02 4.76 15 25 H 0.45 5.70 9.11 -74.06 -0.67 5.02 15 Total: -1.00 -64.07 241.76 2.15 -61.92 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.74 Total: 15.73 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 2.91 Total: -14.37 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -3.01 Total: -58.03 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.54 Total: -44.49 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.06 Total: 39.25 kcal Total: -64.07 2.15 -61.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396123326.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.280 kcal (2) G-P(sol) polarization free energy of solvation -64.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds