Wall clock time and date at job start Mon Mar 30 2020 03:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30481 * 1 3 3 Si 1.86794 * 119.99992 * 2 1 4 4 H 1.48495 * 109.47123 * 239.99888 * 3 2 1 5 5 H 1.48509 * 109.47063 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47209 * 119.99569 * 3 2 1 7 7 C 1.40536 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99736 * 180.02562 * 7 2 1 9 9 C 1.39911 * 120.00345 * 0.02562 * 7 2 1 10 10 N 1.32534 * 125.15933 * 179.97438 * 9 7 2 11 11 C 1.33689 * 108.93498 * 180.02562 * 10 9 7 12 12 C 1.41157 * 107.07326 * 359.97438 * 11 10 9 13 13 C 1.38481 * 119.85647 * 180.02562 * 12 11 10 14 14 C 1.38322 * 120.29595 * 359.97438 * 13 12 11 15 15 C 1.38457 * 120.80752 * 0.02562 * 14 13 12 16 16 C 1.39201 * 120.31784 * 0.23190 * 15 14 13 17 17 C 1.47241 * 120.32326 * 179.72127 * 16 15 14 18 18 O 1.21533 * 119.99771 * 179.97438 * 17 16 15 19 19 O 1.34790 * 119.99960 * 359.97438 * 17 16 15 20 20 O 1.35051 * 125.15914 * 0.02562 * 9 7 2 21 21 H 0.97002 * 120.00424 * 0.02562 * 1 2 3 22 22 H 1.08005 * 119.85343 * 180.02562 * 13 12 11 23 23 H 1.08000 * 119.59224 * 179.97438 * 14 13 12 24 24 H 1.08002 * 119.83665 * 179.97438 * 15 14 13 25 25 H 0.96695 * 117.00129 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3048 0.0000 0.0000 3 14 2.2388 1.6177 0.0000 4 1 3.0925 1.6963 -1.2124 5 1 1.2737 2.7465 -0.0006 6 1 3.0925 1.6964 1.2126 7 6 2.0074 -1.2171 0.0005 8 1 3.0874 -1.2171 0.0010 9 6 1.3079 -2.4288 0.0005 10 7 1.8647 -3.6315 0.0005 11 6 0.8994 -4.5564 0.0000 12 6 -0.3334 -3.8689 0.0002 13 6 -1.5205 -4.5819 0.0003 14 6 -1.5036 -5.9651 -0.0004 15 6 -0.3059 -6.6596 -0.0007 16 6 0.9048 -5.9727 0.0047 17 6 2.1785 -6.7112 0.0106 18 8 3.2321 -6.1055 0.0148 19 8 2.1761 -8.0591 0.0114 20 8 -0.0371 -2.5503 -0.0004 21 1 -0.4851 0.8400 -0.0004 22 1 -2.4637 -4.0558 0.0000 23 1 -2.4362 -6.5098 0.0000 24 1 -0.3111 -7.7397 -0.0008 25 1 3.0368 -8.4997 0.0158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396125474.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:39 Heat of formation + Delta-G solvation = -99.129544 kcal Electronic energy + Delta-G solvation = -15488.052174 eV Core-core repulsion = 12624.226494 eV Total energy + Delta-G solvation = -2863.825680 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.33642 -40.88363 -38.29393 -36.86792 -35.95859 -34.94588 -31.74308 -31.20150 -28.42171 -25.26033 -23.59942 -23.28179 -21.52018 -20.10445 -18.88678 -18.30794 -17.69834 -17.33737 -17.05522 -16.54903 -16.34704 -15.77661 -14.78742 -14.42632 -14.25382 -13.59332 -13.32913 -13.26367 -12.96444 -12.79956 -12.49759 -12.40749 -12.09510 -12.05356 -11.48210 -11.34441 -10.63702 -9.65599 -9.38782 -9.12244 -7.08267 -0.36098 0.54009 1.30957 1.33824 1.52893 1.69003 1.93059 2.07735 2.23327 2.40657 2.81068 3.14036 3.69531 3.98732 4.25884 4.34585 4.66307 4.70394 4.77098 4.97333 5.25060 5.45150 5.48817 5.60446 5.71434 5.88430 5.99708 6.20016 6.26545 7.18907 7.50571 7.90239 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.037476 B = 0.007719 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.964239 B = 3626.456887 C = 4363.575062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.026 3.974 3 Si 1.024 2.976 4 H -0.250 1.250 5 H -0.252 1.252 6 H -0.250 1.250 7 C -0.414 4.414 8 H 0.124 0.876 9 C 0.335 3.665 10 N -0.642 5.642 11 C 0.123 3.877 12 C -0.115 4.115 13 C -0.037 4.037 14 C -0.171 4.171 15 C -0.025 4.025 16 C -0.194 4.194 17 C 0.528 3.472 18 O -0.550 6.550 19 O -0.501 6.501 20 O -0.218 6.218 21 H 0.311 0.689 22 H 0.146 0.854 23 H 0.182 0.818 24 H 0.172 0.828 25 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 -5.231 0.000 6.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.198 4.198 3 Si 0.839 3.161 4 H -0.174 1.174 5 H -0.175 1.175 6 H -0.174 1.174 7 C -0.446 4.446 8 H 0.142 0.858 9 C 0.159 3.841 10 N -0.379 5.379 11 C -0.003 4.003 12 C -0.166 4.166 13 C -0.056 4.056 14 C -0.190 4.190 15 C -0.043 4.043 16 C -0.200 4.200 17 C 0.375 3.625 18 O -0.442 6.442 19 O -0.315 6.315 20 O -0.116 6.116 21 H 0.123 0.877 22 H 0.164 0.836 23 H 0.200 0.800 24 H 0.189 0.811 25 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -3.695 -4.761 0.000 6.027 hybrid contribution 0.353 0.586 0.001 0.684 sum -3.342 -4.176 0.001 5.348 Atomic orbital electron populations 1.69643 1.09714 1.33462 1.27084 1.27519 0.96071 1.05863 0.90360 0.84631 0.78382 0.72018 0.81038 1.17395 1.17534 1.17385 1.19386 0.96118 0.86440 1.42667 0.85798 1.23016 0.76902 0.94758 0.89472 1.71071 1.31031 0.97653 1.38100 1.20205 0.89985 0.94551 0.95575 1.21223 0.98002 0.83203 1.14189 1.20402 0.93626 0.94383 0.97217 1.21096 0.99381 0.91167 1.07405 1.21530 0.89424 1.01153 0.92201 1.18211 0.92730 0.87992 1.21022 1.20743 0.89087 0.80758 0.71930 1.90898 1.34846 1.70368 1.48087 1.84494 1.41767 1.19135 1.86114 1.84976 1.25983 1.22647 1.77977 0.87728 0.83645 0.80040 0.81057 0.71333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.22 11.93 21.93 0.26 -37.96 15 2 C 0.03 1.22 5.50 85.45 0.47 1.69 15 3 Si 1.02 34.05 29.56 68.60 2.03 36.08 15 4 H -0.25 -8.07 7.11 99.48 0.71 -7.36 15 5 H -0.25 -7.53 7.11 99.48 0.71 -6.83 15 6 H -0.25 -8.06 7.11 99.48 0.71 -7.36 15 7 C -0.41 -22.61 9.46 23.24 0.22 -22.39 15 8 H 0.12 6.45 7.85 -2.91 -0.02 6.43 15 9 C 0.33 20.16 7.61 84.99 0.65 20.81 15 10 N -0.64 -39.58 10.62 -301.31 -3.20 -42.78 15 11 C 0.12 6.74 6.84 40.41 0.28 7.01 15 12 C -0.12 -5.95 7.42 23.04 0.17 -5.78 15 13 C -0.04 -1.44 10.04 22.35 0.22 -1.21 15 14 C -0.17 -5.17 10.01 22.34 0.22 -4.95 15 15 C -0.02 -0.81 9.60 22.55 0.22 -0.59 15 16 C -0.19 -8.71 5.91 -19.84 -0.12 -8.82 15 17 C 0.53 22.51 8.26 70.19 0.58 23.09 15 18 O -0.55 -28.54 16.86 19.73 0.33 -28.21 15 19 O -0.50 -14.50 12.67 -57.01 -0.72 -15.22 15 20 O -0.22 -12.73 9.01 -18.51 -0.17 -12.90 15 21 H 0.31 13.17 8.29 -92.71 -0.77 12.40 15 22 H 0.15 4.72 8.06 -2.91 -0.02 4.69 15 23 H 0.18 3.50 8.06 -2.91 -0.02 3.48 15 24 H 0.17 4.16 7.59 -2.91 -0.02 4.14 15 25 H 0.43 8.00 9.11 -74.06 -0.67 7.32 15 Total: -1.00 -77.24 241.60 2.03 -75.21 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.59 Total: 16.92 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 2.91 Total: 8.85 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -2.94 Total: -80.74 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -0.56 Total: -56.33 kcal Atomic # 14 Polarization: 34.05 SS G_CDS: 2.03 Total: 36.08 kcal Total: -77.24 2.03 -75.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396125474.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.917 kcal (2) G-P(sol) polarization free energy of solvation -77.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds