Wall clock time and date at job start Mon Mar 30 2020 03:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86800 * 120.00278 * 2 1 4 4 H 1.48497 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47183 * 299.99922 * 3 2 1 6 6 H 1.48493 * 109.47185 * 59.99774 * 3 2 1 7 7 C 1.39907 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99922 * 163.15738 * 7 2 1 9 9 C 1.41354 * 119.99649 * 343.15920 * 7 2 1 10 10 C 1.41186 * 120.02287 * 154.40537 * 9 7 2 11 11 C 1.36131 * 120.45417 * 180.02562 * 10 9 7 12 12 C 1.39308 * 120.35335 * 359.97438 * 11 10 9 13 13 O 1.34893 * 133.58493 * 180.37072 * 12 11 10 14 14 C 1.34763 * 107.99578 * 180.08400 * 13 12 11 15 15 C 1.47802 * 124.94778 * 179.83455 * 14 13 12 16 16 O 1.21449 * 120.00264 * 179.69996 * 15 14 13 17 17 O 1.34750 * 119.99451 * 359.69254 * 15 14 13 18 18 N 1.30689 * 110.11232 * 359.56610 * 14 13 12 19 19 C 1.34827 * 108.91874 * 0.26443 * 18 14 13 20 20 C 1.39460 * 133.55746 * 180.02562 * 19 18 14 21 21 H 0.97007 * 119.99645 * 0.02562 * 1 2 3 22 22 H 1.07996 * 119.77511 * 0.03695 * 10 9 7 23 23 H 1.07992 * 119.82064 * 179.97438 * 11 10 9 24 24 H 0.96699 * 116.99689 * 180.02562 * 17 15 14 25 25 H 1.08006 * 120.32060 * 359.95348 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7026 1.3462 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3964 1.2124 7 6 2.0081 -1.2117 0.0005 8 1 3.0533 -1.2319 -0.2704 9 6 1.3467 -2.4093 0.3557 10 6 1.8179 -3.6478 -0.1316 11 6 1.1873 -4.8065 0.2045 12 6 0.0688 -4.7841 1.0346 13 8 -0.7392 -5.7427 1.5324 14 6 -1.6798 -5.1431 2.2886 15 6 -2.7611 -5.8464 3.0102 16 8 -3.5599 -5.2152 3.6723 17 8 -2.8607 -7.1880 2.9332 18 7 -1.4932 -3.8496 2.2958 19 6 -0.4197 -3.5585 1.5338 20 6 0.2225 -2.3685 1.1927 21 1 -0.4850 0.8401 -0.0004 22 1 2.6846 -3.6762 -0.7752 23 1 1.5562 -5.7481 -0.1744 24 1 -3.5844 -7.6032 3.4219 25 1 -0.1431 -1.4244 1.5690 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396127173.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:13 Heat of formation + Delta-G solvation = -76.410764 kcal Electronic energy + Delta-G solvation = -15233.965284 eV Core-core repulsion = 12371.124764 eV Total energy + Delta-G solvation = -2862.840520 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.05971 -41.26049 -38.75409 -37.48602 -35.76053 -35.35884 -31.57736 -30.90893 -28.03571 -26.32230 -23.42973 -22.99373 -22.27777 -20.00075 -19.40971 -18.72345 -18.18962 -18.02824 -17.32864 -16.47288 -16.28682 -15.51344 -14.74969 -14.69124 -14.64634 -13.81076 -13.44816 -12.92171 -12.89426 -12.84606 -12.54093 -12.42648 -12.36247 -12.17432 -11.82573 -11.34079 -11.08045 -9.55614 -9.28939 -8.71514 -6.44934 -0.66562 0.67097 0.87117 0.94171 1.42151 1.47839 1.58528 1.84956 1.90032 2.19689 2.58497 3.46672 3.66523 3.85853 4.10961 4.37696 4.62442 4.69591 4.97387 5.11408 5.19071 5.35641 5.48907 5.64628 5.77117 5.93873 6.28817 6.59096 6.74285 6.79301 6.80360 8.26151 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.045847 B = 0.006469 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.578555 B = 4327.271922 C = 4862.387502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 0.987 3.013 4 H -0.247 1.247 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.475 4.475 8 H 0.101 0.899 9 C 0.076 3.924 10 C -0.135 4.135 11 C -0.076 4.076 12 C -0.086 4.086 13 O -0.195 6.195 14 C 0.169 3.831 15 C 0.610 3.390 16 O -0.491 6.491 17 O -0.477 6.477 18 N -0.439 5.439 19 C 0.017 3.983 20 C -0.166 4.166 21 H 0.290 0.710 22 H 0.154 0.846 23 H 0.155 0.845 24 H 0.451 0.549 25 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.552 -7.995 1.021 8.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.170 1.170 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.504 4.504 8 H 0.119 0.881 9 C 0.072 3.928 10 C -0.154 4.154 11 C -0.095 4.095 12 C -0.136 4.136 13 O -0.085 6.085 14 C -0.039 4.039 15 C 0.449 3.551 16 O -0.378 6.378 17 O -0.292 6.292 18 N -0.178 5.178 19 C -0.096 4.096 20 C -0.187 4.187 21 H 0.101 0.899 22 H 0.172 0.828 23 H 0.173 0.827 24 H 0.317 0.683 25 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.030 -7.187 1.314 7.306 hybrid contribution -0.244 0.219 0.067 0.335 sum -0.214 -6.968 1.381 7.107 Atomic orbital electron populations 1.69909 1.09477 1.30962 1.34231 1.26915 0.95377 1.05183 0.91111 0.85069 0.79846 0.75741 0.78593 1.16958 1.19161 1.19776 1.19952 0.98688 0.91224 1.40532 0.88091 1.17829 0.91293 0.94200 0.89438 1.21361 1.01891 0.90753 1.01361 1.19602 0.91965 1.00362 0.97577 1.20690 0.99527 0.85535 1.07864 1.84368 1.35090 1.35612 1.53451 1.24164 0.93735 0.87466 0.98552 1.17729 0.79336 0.81544 0.76447 1.90970 1.39758 1.68689 1.38369 1.84543 1.56764 1.17633 1.70273 1.70119 1.16521 1.12538 1.18587 1.19869 0.94012 0.96326 0.99392 1.20424 1.00988 0.93590 1.03742 0.89939 0.82849 0.82728 0.68313 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.45 10.96 21.82 0.24 -42.21 15 2 C 0.03 1.44 5.14 85.24 0.44 1.88 15 3 Si 0.99 35.94 29.59 68.60 2.03 37.97 15 4 H -0.25 -8.42 7.11 99.48 0.71 -7.72 15 5 H -0.27 -9.37 7.11 99.48 0.71 -8.66 15 6 H -0.27 -9.94 7.11 99.48 0.71 -9.24 15 7 C -0.48 -23.16 9.04 23.44 0.21 -22.95 15 8 H 0.10 4.46 7.90 -2.91 -0.02 4.43 15 9 C 0.08 3.83 5.57 -21.31 -0.12 3.71 15 10 C -0.13 -5.62 9.71 22.50 0.22 -5.41 15 11 C -0.08 -3.03 9.98 22.04 0.22 -2.81 15 12 C -0.09 -3.97 7.45 23.22 0.17 -3.80 15 13 O -0.19 -8.26 10.80 -12.38 -0.13 -8.40 15 14 C 0.17 7.17 8.05 87.40 0.70 7.87 15 15 C 0.61 19.97 8.35 70.35 0.59 20.56 15 16 O -0.49 -18.04 17.84 20.00 0.36 -17.68 15 17 O -0.48 -10.14 13.44 -54.97 -0.74 -10.88 15 18 N -0.44 -22.09 11.24 -297.93 -3.35 -25.44 15 19 C 0.02 0.91 7.20 39.67 0.29 1.19 15 20 C -0.17 -9.04 8.75 23.05 0.20 -8.84 15 21 H 0.29 13.68 8.30 -92.70 -0.77 12.91 15 22 H 0.15 5.26 8.06 -2.91 -0.02 5.24 15 23 H 0.16 4.73 8.06 -2.91 -0.02 4.71 15 24 H 0.45 3.50 9.11 -74.06 -0.67 2.83 15 25 H 0.11 6.27 6.19 -2.91 -0.02 6.25 15 Total: -1.00 -66.38 242.04 1.91 -64.46 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.59 Total: 10.76 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 2.92 Total: -8.58 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -3.11 Total: -67.65 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.52 Total: -36.96 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Total: -66.38 1.91 -64.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396127173.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.949 kcal (2) G-P(sol) polarization free energy of solvation -66.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds