Wall clock time and date at job start Mon Mar 30 2020 03:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30813 * 1 3 3 Si 1.86802 * 120.00329 * 2 1 4 4 H 1.48498 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46955 * 300.00034 * 3 2 1 6 6 H 1.48495 * 109.47081 * 60.00111 * 3 2 1 7 7 C 1.40014 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99994 * 197.84278 * 7 2 1 9 9 C 1.41036 * 120.00292 * 17.84335 * 7 2 1 10 10 C 1.40637 * 120.30783 * 24.61476 * 9 7 2 11 11 C 1.38025 * 120.24812 * 180.02562 * 10 9 7 12 12 C 1.38085 * 120.80802 * 359.92020 * 11 10 9 13 13 C 1.40281 * 120.25978 * 0.02567 * 12 11 10 14 14 N 1.34721 * 133.53528 * 180.02562 * 13 12 11 15 15 C 1.30770 * 108.89917 * 179.97438 * 14 13 12 16 16 C 1.47769 * 125.03719 * 180.02562 * 15 14 13 17 17 O 1.21465 * 119.99848 * 179.97438 * 16 15 14 18 18 O 1.34744 * 120.00354 * 359.95314 * 16 15 14 19 19 O 1.34737 * 109.91942 * 359.97438 * 15 14 13 20 20 C 1.34584 * 107.93648 * 0.02562 * 19 15 14 21 21 H 0.97001 * 119.99225 * 359.97438 * 1 2 3 22 22 H 1.08002 * 119.88022 * 359.97438 * 10 9 7 23 23 H 1.08003 * 119.59492 * 179.97438 * 11 10 9 24 24 H 1.07994 * 119.86635 * 180.02562 * 12 11 10 25 25 H 0.96697 * 116.99949 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0082 -1.2126 -0.0005 8 1 3.0493 -1.2352 0.2860 9 6 1.3539 -2.4045 -0.3753 10 6 0.2259 -2.3613 -1.2141 11 6 -0.4138 -3.5285 -1.5797 12 6 0.0401 -4.7536 -1.1327 13 6 1.1634 -4.8288 -0.2958 14 7 1.8221 -5.8512 0.2836 15 6 2.8214 -5.3721 0.9779 16 6 3.7787 -6.1837 1.7579 17 8 4.6763 -5.6415 2.3708 18 8 3.6557 -7.5251 1.7896 19 8 2.8492 -4.0290 0.8755 20 6 1.8263 -3.6521 0.0862 21 1 -0.4849 0.8401 0.0004 22 1 -0.1418 -1.4113 -1.5730 23 1 -1.2794 -3.4830 -2.2240 24 1 -0.4718 -5.6573 -1.4285 25 1 4.3054 -8.0132 2.3137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396130709.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:37 Heat of formation + Delta-G solvation = -75.431252 kcal Electronic energy + Delta-G solvation = -15396.316729 eV Core-core repulsion = 12533.518684 eV Total energy + Delta-G solvation = -2862.798045 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.16821 -41.25523 -38.60667 -37.43362 -36.29906 -35.05337 -31.78712 -30.84693 -27.49018 -26.66925 -23.82665 -22.77031 -22.40285 -19.70385 -19.39130 -18.66483 -18.46548 -18.06092 -17.42469 -16.52510 -16.45266 -15.53683 -14.87385 -14.71080 -14.44823 -13.70552 -13.35918 -13.09932 -13.00332 -12.88994 -12.48319 -12.41026 -12.35050 -12.09320 -11.98086 -11.40610 -11.11587 -9.60126 -9.33862 -8.85670 -6.53327 -0.66115 0.66711 0.71585 0.83945 1.36647 1.41076 1.52370 1.83439 2.14843 2.30512 2.56105 3.30509 3.35196 3.93930 4.18492 4.51513 4.68536 4.75064 4.81516 5.03888 5.14841 5.27420 5.48500 5.72294 5.88347 6.00171 6.19212 6.43892 6.59132 6.65245 6.79564 8.10993 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.029337 B = 0.008216 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.191453 B = 3406.972811 C = 4281.779877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.042 3.958 3 Si 0.988 3.012 4 H -0.265 1.265 5 H -0.251 1.251 6 H -0.261 1.261 7 C -0.477 4.477 8 H 0.072 0.928 9 C 0.106 3.894 10 C -0.186 4.186 11 C -0.066 4.066 12 C -0.201 4.201 13 C 0.025 3.975 14 N -0.416 5.416 15 C 0.151 3.849 16 C 0.613 3.387 17 O -0.510 6.510 18 O -0.464 6.464 19 O -0.195 6.195 20 C -0.077 4.077 21 H 0.301 0.699 22 H 0.133 0.867 23 H 0.148 0.852 24 H 0.135 0.865 25 H 0.452 0.548 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 -4.691 -0.083 5.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.177 4.177 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.175 1.175 6 H -0.186 1.186 7 C -0.504 4.504 8 H 0.090 0.910 9 C 0.103 3.897 10 C -0.206 4.206 11 C -0.086 4.086 12 C -0.221 4.221 13 C -0.090 4.090 14 N -0.154 5.154 15 C -0.057 4.057 16 C 0.453 3.547 17 O -0.397 6.397 18 O -0.279 6.279 19 O -0.084 6.084 20 C -0.128 4.128 21 H 0.112 0.888 22 H 0.150 0.850 23 H 0.166 0.834 24 H 0.153 0.847 25 H 0.318 0.682 Dipole moment (debyes) X Y Z Total from point charges 1.590 -4.822 -0.099 5.078 hybrid contribution 0.942 1.039 0.617 1.533 sum 2.532 -3.783 0.518 4.582 Atomic orbital electron populations 1.69777 1.08796 1.31813 1.31558 1.26752 0.95662 1.04345 0.90945 0.85066 0.79029 0.75466 0.79727 1.18879 1.17506 1.18589 1.19825 0.98323 0.92461 1.39825 0.90999 1.17008 0.93481 0.87475 0.91756 1.21184 0.98893 0.98767 1.01744 1.21003 0.98754 0.90911 0.97884 1.19952 0.98004 0.98793 1.05375 1.19896 0.99887 0.86869 1.02382 1.70219 1.04719 1.32131 1.08327 1.24048 0.98389 0.80078 1.03141 1.17609 0.79165 0.81789 0.76129 1.90960 1.32798 1.73867 1.42110 1.84525 1.58696 1.15260 1.69384 1.84290 1.45221 1.22310 1.56591 1.21483 0.91797 0.98623 1.00875 0.88803 0.84976 0.83398 0.84686 0.68245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.80 10.96 21.84 0.24 -37.56 15 2 C 0.04 1.97 5.14 85.28 0.44 2.41 15 3 Si 0.99 35.84 29.60 68.60 2.03 37.87 15 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 5 H -0.25 -8.42 7.11 99.48 0.71 -7.71 15 6 H -0.26 -9.06 7.11 99.48 0.71 -8.35 15 7 C -0.48 -25.33 9.04 23.39 0.21 -25.12 15 8 H 0.07 3.88 7.91 -2.91 -0.02 3.85 15 9 C 0.11 5.69 5.57 -21.29 -0.12 5.57 15 10 C -0.19 -8.99 8.69 22.81 0.20 -8.79 15 11 C -0.07 -2.76 9.98 22.18 0.22 -2.54 15 12 C -0.20 -8.65 10.11 22.73 0.23 -8.42 15 13 C 0.03 1.22 7.21 39.71 0.29 1.51 15 14 N -0.42 -18.90 11.28 -297.90 -3.36 -22.26 15 15 C 0.15 6.65 8.05 87.37 0.70 7.36 15 16 C 0.61 21.03 8.35 70.34 0.59 21.62 15 17 O -0.51 -19.16 17.89 23.27 0.42 -18.75 15 18 O -0.46 -10.86 13.42 -56.54 -0.76 -11.62 15 19 O -0.20 -10.05 10.78 -3.44 -0.04 -10.09 15 20 C -0.08 -4.11 7.18 23.51 0.17 -3.95 15 21 H 0.30 12.50 8.30 -92.71 -0.77 11.73 15 22 H 0.13 6.38 6.15 -2.91 -0.02 6.36 15 23 H 0.15 4.90 8.06 -2.91 -0.02 4.87 15 24 H 0.14 4.98 8.06 -2.91 -0.02 4.95 15 25 H 0.45 4.22 9.11 -74.06 -0.67 3.55 15 Total: -1.00 -64.69 242.14 2.05 -62.64 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.59 Total: 10.11 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 2.93 Total: -10.35 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -3.12 Total: -59.82 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.38 Total: -40.46 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Total: -64.69 2.05 -62.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396130709.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.789 kcal (2) G-P(sol) polarization free energy of solvation -64.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds