Wall clock time and date at job start Mon Mar 30 2020 03:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48039 * 111.00253 * 2 1 4 4 C 1.51207 * 105.67969 * 212.99386 * 3 2 1 5 5 C 1.38257 * 131.68135 * 197.52290 * 4 3 2 6 6 C 1.38085 * 120.12511 * 179.97438 * 5 4 3 7 7 C 1.38933 * 119.92850 * 0.02562 * 6 5 4 8 8 N 1.39669 * 120.07757 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00194 * 0.02562 * 8 7 6 10 10 C 1.50704 * 109.46938 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00377 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99655 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00057 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99843 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47077 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.46989 * 119.99796 * 14 12 10 17 17 H 1.48501 * 109.47168 * 239.99495 * 14 12 10 18 18 C 1.38890 * 119.84263 * 359.97438 * 7 6 5 19 19 C 1.38057 * 119.97091 * 0.02562 * 18 7 6 20 20 C 1.48055 * 110.99894 * 244.98247 * 2 1 3 21 21 H 1.09002 * 109.47401 * 175.01320 * 1 2 3 22 22 H 1.09001 * 109.46874 * 55.01333 * 1 2 3 23 23 H 1.09004 * 109.46970 * 295.01466 * 1 2 3 24 24 H 1.08995 * 110.20857 * 332.04711 * 3 2 1 25 25 H 1.09004 * 110.20531 * 93.94524 * 3 2 1 26 26 H 1.07999 * 119.93956 * 0.02562 * 5 4 3 27 27 H 1.08002 * 120.03298 * 180.02562 * 6 5 4 28 28 H 0.97003 * 119.99743 * 180.02562 * 8 7 6 29 29 H 1.08999 * 109.47134 * 299.99956 * 9 8 7 30 30 H 1.09002 * 109.47222 * 60.00106 * 9 8 7 31 31 H 0.96998 * 119.99873 * 180.02562 * 13 12 10 32 32 H 1.07996 * 120.01344 * 180.02562 * 18 7 6 33 33 H 1.08990 * 110.21036 * 266.05694 * 20 2 1 34 34 H 1.09002 * 110.20074 * 27.87716 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9996 1.3820 0.0000 4 6 3.2860 1.3259 -0.7928 5 6 4.3576 2.1962 -0.8691 6 6 5.4312 1.9034 -1.6867 7 6 5.4341 0.7324 -2.4343 8 7 6.5187 0.4329 -3.2618 9 6 7.6552 1.3538 -3.3418 10 6 8.6822 0.8024 -4.2971 11 1 8.5061 -0.1399 -4.7944 12 6 9.8471 1.5005 -4.5352 13 7 10.0617 2.6478 -3.9292 14 14 11.1204 0.8167 -5.7187 15 1 10.6432 -0.4792 -6.2646 16 1 11.3275 1.7773 -6.8321 17 1 12.4029 0.6083 -4.9997 18 6 4.3565 -0.1403 -2.3559 19 6 3.2858 0.1577 -1.5368 20 6 1.9996 -0.5845 -1.2525 21 1 -0.3634 -1.0238 -0.0893 22 1 -0.3633 0.5893 -0.8420 23 1 -0.3633 0.4346 0.9313 24 1 1.2910 2.0574 -0.4795 25 1 2.2002 1.7083 1.0205 26 1 4.3554 3.1062 -0.2876 27 1 6.2677 2.5841 -1.7449 28 1 6.5193 -0.3849 -3.7835 29 1 7.3118 2.3247 -3.6989 30 1 8.1014 1.4671 -2.3538 31 1 10.8811 3.1391 -4.0970 32 1 4.3560 -1.0516 -2.9355 33 1 2.2002 -1.6472 -1.1167 34 1 1.2902 -0.4367 -2.0669 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567892182.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:12 Heat of formation + Delta-G solvation = 35.150032 kcal Electronic energy + Delta-G solvation = -15350.349903 eV Core-core repulsion = 12861.731873 eV Total energy + Delta-G solvation = -2488.618030 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.99713 -37.34939 -34.56373 -32.61682 -31.06910 -30.01132 -27.68098 -26.61278 -25.26085 -22.80348 -22.06080 -20.94840 -19.82756 -17.17919 -16.04361 -15.68549 -15.51569 -15.10846 -14.71288 -13.94113 -13.68244 -13.30404 -13.02220 -12.89991 -12.86597 -12.52538 -12.12626 -11.95308 -11.49131 -11.47512 -11.10533 -10.95868 -10.82256 -10.35719 -10.16330 -9.43196 -9.39894 -8.70064 -8.54862 -8.17526 -6.52653 -6.23194 -4.28425 1.88129 2.10067 3.20602 3.28176 3.31658 4.00163 4.22107 4.31691 4.45174 4.81778 4.82431 5.14191 5.21065 5.26463 5.44856 5.51645 5.55990 5.66764 5.68667 5.80032 5.90339 6.15755 6.32703 6.43733 6.58997 6.85601 6.91413 6.99681 7.10314 7.14702 7.40083 7.40796 7.63809 7.92273 8.26272 8.64312 8.87849 9.38123 10.87475 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.073575 B = 0.004464 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.471424 B = 6270.387853 C = 6609.429655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.512 5.512 3 C 0.090 3.910 4 C -0.194 4.194 5 C -0.046 4.046 6 C -0.200 4.200 7 C 0.238 3.762 8 N -0.727 5.727 9 C 0.250 3.750 10 C -0.539 4.539 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.889 5.889 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.195 4.195 19 C -0.058 4.058 20 C 0.078 3.922 21 H 0.069 0.931 22 H 0.029 0.971 23 H 0.070 0.930 24 H 0.049 0.951 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.128 0.872 28 H 0.391 0.609 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.265 0.735 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.101 -3.229 5.338 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.235 5.235 3 C -0.037 4.037 4 C -0.197 4.197 5 C -0.066 4.066 6 C -0.223 4.223 7 C 0.128 3.872 8 N -0.350 5.350 9 C 0.129 3.871 10 C -0.577 4.577 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.526 5.526 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.207 1.207 18 C -0.219 4.219 19 C -0.060 4.060 20 C -0.049 4.049 21 H 0.088 0.912 22 H 0.048 0.952 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.132 0.868 27 H 0.146 0.854 28 H 0.225 0.775 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.609 -3.240 5.808 16.051 hybrid contribution 0.523 -0.094 -1.553 1.642 sum -14.085 -3.335 4.255 15.087 Atomic orbital electron populations 1.22587 0.87752 1.01974 1.01142 1.65182 1.08076 1.15879 1.34381 1.21404 0.93165 0.89394 0.99722 1.19996 0.97495 0.98018 1.04221 1.20103 0.91741 0.97710 0.97013 1.20668 1.00724 0.98668 1.02231 1.17904 0.87362 0.92525 0.89361 1.45511 1.18171 1.25732 1.45546 1.19133 0.82172 0.88810 0.97003 1.21236 1.02881 1.07225 1.26393 0.91918 1.24935 0.98106 0.94765 0.96198 1.69954 1.26433 1.14004 1.42251 0.86351 0.81007 0.79032 0.80504 1.19639 1.20761 1.20746 1.19735 0.94499 1.01579 1.06107 1.20013 0.94425 0.95489 0.96036 1.21576 0.93183 0.99454 0.90705 0.91191 0.95210 0.91084 0.93327 0.90131 0.86828 0.85408 0.77529 0.96103 0.96066 0.92492 0.86879 0.89588 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.35 60.07 0.56 0.70 16 2 N -0.51 -6.55 5.76 -243.19 -1.40 -7.95 16 3 C 0.09 1.19 6.61 -4.10 -0.03 1.16 16 4 C -0.19 -3.10 6.26 -104.27 -0.65 -3.76 16 5 C -0.05 -0.77 10.03 -39.63 -0.40 -1.17 16 6 C -0.20 -3.84 9.31 -39.38 -0.37 -4.20 16 7 C 0.24 4.69 6.65 -83.79 -0.56 4.13 16 8 N -0.73 -15.54 5.72 -59.81 -0.34 -15.88 16 9 C 0.25 6.34 4.67 -5.19 -0.02 6.32 16 10 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 11 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 14 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.20 -3.39 9.89 -39.41 -0.39 -3.78 16 19 C -0.06 -0.94 6.26 -104.34 -0.65 -1.59 16 20 C 0.08 1.03 6.61 -4.09 -0.03 1.00 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.03 0.27 7.91 -51.93 -0.41 -0.14 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.59 7.69 -51.93 -0.40 0.19 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.13 2.58 6.74 -52.49 -0.35 2.23 16 28 H 0.39 7.76 8.33 -40.82 -0.34 7.42 16 29 H 0.02 0.57 7.95 -51.93 -0.41 0.16 16 30 H 0.02 0.58 7.95 -51.93 -0.41 0.17 16 31 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.67 7.77 -51.93 -0.40 0.27 16 LS Contribution 284.94 15.07 4.29 4.29 Total: -1.00 -28.87 284.94 -9.49 -38.36 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.80 Total: 4.56 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -2.95 Total: -14.44 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -1.01 Total: -48.56 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.87 -9.49 -38.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567892182.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.506 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds