Wall clock time and date at job start Mon Mar 30 2020 03:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48039 * 111.00253 * 2 1 4 4 C 1.51207 * 105.67969 * 212.99386 * 3 2 1 5 5 C 1.38257 * 131.68135 * 197.52290 * 4 3 2 6 6 C 1.38085 * 120.12511 * 179.97438 * 5 4 3 7 7 C 1.38933 * 119.92850 * 0.02562 * 6 5 4 8 8 N 1.39669 * 120.07757 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00194 * 0.02562 * 8 7 6 10 10 C 1.50704 * 109.46938 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00377 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99655 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00057 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99843 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47077 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.46989 * 119.99796 * 14 12 10 17 17 H 1.48501 * 109.47168 * 239.99495 * 14 12 10 18 18 C 1.38890 * 119.84263 * 359.97438 * 7 6 5 19 19 C 1.38057 * 119.97091 * 0.02562 * 18 7 6 20 20 C 1.48055 * 110.99894 * 244.98247 * 2 1 3 21 21 H 1.09002 * 109.47401 * 175.01320 * 1 2 3 22 22 H 1.09001 * 109.46874 * 55.01333 * 1 2 3 23 23 H 1.09004 * 109.46970 * 295.01466 * 1 2 3 24 24 H 1.08995 * 110.20857 * 332.04711 * 3 2 1 25 25 H 1.09004 * 110.20531 * 93.94524 * 3 2 1 26 26 H 1.07999 * 119.93956 * 0.02562 * 5 4 3 27 27 H 1.08002 * 120.03298 * 180.02562 * 6 5 4 28 28 H 0.97003 * 119.99743 * 180.02562 * 8 7 6 29 29 H 1.08999 * 109.47134 * 299.99956 * 9 8 7 30 30 H 1.09002 * 109.47222 * 60.00106 * 9 8 7 31 31 H 0.96998 * 119.99873 * 180.02562 * 13 12 10 32 32 H 1.07996 * 120.01344 * 180.02562 * 18 7 6 33 33 H 1.08990 * 110.21036 * 266.05694 * 20 2 1 34 34 H 1.09002 * 110.20074 * 27.87716 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9996 1.3820 0.0000 4 6 3.2860 1.3259 -0.7928 5 6 4.3576 2.1962 -0.8691 6 6 5.4312 1.9034 -1.6867 7 6 5.4341 0.7324 -2.4343 8 7 6.5187 0.4329 -3.2618 9 6 7.6552 1.3538 -3.3418 10 6 8.6822 0.8024 -4.2971 11 1 8.5061 -0.1399 -4.7944 12 6 9.8471 1.5005 -4.5352 13 7 10.0617 2.6478 -3.9292 14 14 11.1204 0.8167 -5.7187 15 1 10.6432 -0.4792 -6.2646 16 1 11.3275 1.7773 -6.8321 17 1 12.4029 0.6083 -4.9997 18 6 4.3565 -0.1403 -2.3559 19 6 3.2858 0.1577 -1.5368 20 6 1.9996 -0.5845 -1.2525 21 1 -0.3634 -1.0238 -0.0893 22 1 -0.3633 0.5893 -0.8420 23 1 -0.3633 0.4346 0.9313 24 1 1.2910 2.0574 -0.4795 25 1 2.2002 1.7083 1.0205 26 1 4.3554 3.1062 -0.2876 27 1 6.2677 2.5841 -1.7449 28 1 6.5193 -0.3849 -3.7835 29 1 7.3118 2.3247 -3.6989 30 1 8.1014 1.4671 -2.3538 31 1 10.8811 3.1391 -4.0970 32 1 4.3560 -1.0516 -2.9355 33 1 2.2002 -1.6472 -1.1167 34 1 1.2902 -0.4367 -2.0669 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567892182.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:11 Heat of formation + Delta-G solvation = 15.954506 kcal Electronic energy + Delta-G solvation = -15351.182283 eV Core-core repulsion = 12861.731873 eV Total energy + Delta-G solvation = -2489.450410 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.23107 -38.68214 -36.17013 -34.51349 -32.35399 -31.40701 -29.17814 -27.95972 -26.57391 -24.63911 -23.31081 -22.09725 -21.28327 -19.06797 -17.40624 -17.24433 -16.73720 -16.54481 -16.19140 -15.33876 -15.04756 -14.80285 -14.49196 -14.28402 -14.07915 -13.81295 -13.62313 -13.32837 -12.91971 -12.79564 -12.58884 -12.41908 -12.30105 -12.03764 -11.63393 -11.42015 -11.02841 -10.55033 -9.84197 -9.35483 -8.32420 -8.09776 -6.46382 0.50240 0.70704 1.40305 1.40561 1.54011 2.32712 2.80997 2.91956 3.03219 3.10892 3.60025 3.69672 4.14719 4.36324 4.39219 4.50024 4.54034 4.64664 4.66344 4.71049 4.89211 4.91769 5.03015 5.05387 5.17462 5.27415 5.45500 5.52087 5.53923 5.56559 5.84531 5.89826 6.06205 6.06432 6.45891 6.72658 7.12829 7.27581 8.79686 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.073575 B = 0.004464 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.471424 B = 6270.387853 C = 6609.429655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.525 5.525 3 C 0.093 3.907 4 C -0.192 4.192 5 C -0.049 4.049 6 C -0.223 4.223 7 C 0.210 3.790 8 N -0.733 5.733 9 C 0.272 3.728 10 C -0.558 4.558 11 H 0.071 0.929 12 C 0.008 3.992 13 N -0.926 5.926 14 Si 0.979 3.021 15 H -0.261 1.261 16 H -0.276 1.276 17 H -0.277 1.277 18 C -0.193 4.193 19 C -0.065 4.065 20 C 0.082 3.918 21 H 0.082 0.918 22 H 0.036 0.964 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.137 0.863 27 H 0.103 0.897 28 H 0.398 0.602 29 H -0.008 1.008 30 H -0.009 1.009 31 H 0.269 0.731 32 H 0.131 0.869 33 H 0.097 0.903 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.929 -4.477 5.412 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.249 5.249 3 C -0.035 4.035 4 C -0.195 4.195 5 C -0.068 4.068 6 C -0.246 4.246 7 C 0.104 3.896 8 N -0.359 5.359 9 C 0.149 3.851 10 C -0.596 4.596 11 H 0.089 0.911 12 C -0.191 4.191 13 N -0.565 5.565 14 Si 0.803 3.197 15 H -0.185 1.185 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.216 4.216 19 C -0.066 4.066 20 C -0.046 4.046 21 H 0.101 0.899 22 H 0.055 0.945 23 H 0.102 0.898 24 H 0.083 0.917 25 H 0.109 0.891 26 H 0.155 0.845 27 H 0.122 0.878 28 H 0.232 0.768 29 H 0.009 0.991 30 H 0.009 0.991 31 H 0.078 0.922 32 H 0.149 0.851 33 H 0.115 0.885 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.495 -4.501 5.905 18.089 hybrid contribution 0.921 0.318 -1.461 1.756 sum -15.574 -4.183 4.444 16.727 Atomic orbital electron populations 1.22687 0.85524 1.03177 1.02129 1.65219 1.10240 1.15323 1.34075 1.21470 0.91756 0.90329 0.99911 1.20485 0.98079 0.97283 1.03615 1.20315 0.91150 0.98856 0.96462 1.20678 1.01300 0.98769 1.03871 1.18149 0.87854 0.93604 0.90041 1.45127 1.18024 1.25576 1.47192 1.18573 0.83156 0.88453 0.94909 1.21613 1.03539 1.07675 1.26736 0.91092 1.25936 1.00346 0.94942 0.97916 1.70085 1.27276 1.15394 1.43743 0.85191 0.77889 0.78652 0.77994 1.18464 1.20175 1.20215 1.19909 0.93913 1.01563 1.06203 1.20481 0.95177 0.95986 0.94997 1.21640 0.91722 0.99613 0.91597 0.89887 0.94523 0.89841 0.91674 0.89058 0.84515 0.87840 0.76800 0.99063 0.99130 0.92176 0.85120 0.88503 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.35 127.69 1.19 1.39 16 2 N -0.53 -11.56 5.76 -923.30 -5.32 -16.88 16 3 C 0.09 2.14 6.61 85.50 0.57 2.71 16 4 C -0.19 -5.79 6.26 -19.63 -0.12 -5.91 16 5 C -0.05 -1.62 10.03 22.24 0.22 -1.39 16 6 C -0.22 -8.98 9.31 22.40 0.21 -8.77 16 7 C 0.21 8.53 6.65 38.22 0.25 8.78 16 8 N -0.73 -32.70 5.72 -343.13 -1.96 -34.66 16 9 C 0.27 14.62 4.67 85.63 0.40 15.02 16 10 C -0.56 -30.95 9.28 25.60 0.24 -30.71 16 11 H 0.07 3.72 7.60 -2.91 -0.02 3.70 16 12 C 0.01 0.47 5.46 84.65 0.46 0.93 16 13 N -0.93 -54.69 13.29 21.45 0.28 -54.41 16 14 Si 0.98 42.89 29.54 68.60 2.03 44.91 16 15 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 18 C -0.19 -6.55 9.89 22.38 0.22 -6.33 16 19 C -0.07 -1.98 6.26 -19.68 -0.12 -2.10 16 20 C 0.08 1.88 6.61 85.49 0.57 2.44 16 21 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.04 0.51 7.91 -2.39 -0.02 0.49 16 23 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.07 1.32 7.69 -2.39 -0.02 1.31 16 25 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 27 H 0.10 4.58 6.74 -2.91 -0.02 4.56 16 28 H 0.40 16.19 8.33 -92.71 -0.77 15.42 16 29 H -0.01 -0.49 7.95 -2.39 -0.02 -0.51 16 30 H -0.01 -0.53 7.95 -2.39 -0.02 -0.55 16 31 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 1.47 7.77 -2.39 -0.02 1.45 16 Total: -1.00 -63.25 284.94 -0.57 -63.81 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.32 Total: 21.16 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 4.08 Total: -23.94 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -7.00 Total: -105.95 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -63.25 -0.57 -63.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567892182.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.769 kcal (2) G-P(sol) polarization free energy of solvation -63.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds