Wall clock time and date at job start Mon Mar 30 2020 02:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38674 * 120.78753 * 2 1 4 4 C 1.38189 * 119.16331 * 180.02562 * 3 2 1 5 5 N 1.31889 * 120.76252 * 359.74826 * 4 3 2 6 6 C 1.31851 * 121.72690 * 0.51927 * 5 4 3 7 7 C 1.50703 * 119.61927 * 179.75890 * 6 5 4 8 8 H 1.08999 * 110.88405 * 340.05040 * 7 6 5 9 9 C 1.55159 * 111.00260 * 216.17416 * 7 6 5 10 10 C 1.54321 * 102.94091 * 206.42040 * 9 7 6 11 11 N 1.47019 * 107.27278 * 22.19240 * 10 9 7 12 12 C 1.36939 * 125.64977 * 181.02180 * 11 10 9 13 13 H 1.07998 * 119.99660 * 169.93796 * 12 11 10 14 14 C 1.38811 * 120.00040 * 349.93314 * 12 11 10 15 15 N 1.31615 * 119.99918 * 164.82191 * 14 12 11 16 16 Si 1.86797 * 119.99661 * 344.82033 * 14 12 11 17 17 H 1.48501 * 109.46902 * 185.53296 * 16 14 12 18 18 H 1.48499 * 109.47537 * 305.52818 * 16 14 12 19 19 H 1.48496 * 109.47259 * 65.53591 * 16 14 12 20 20 C 1.47430 * 108.70380 * 1.28673 * 11 10 9 21 21 C 1.38232 * 120.76486 * 359.47484 * 6 5 4 22 22 H 1.08999 * 109.47331 * 269.97977 * 1 2 3 23 23 H 1.08997 * 109.47093 * 29.97998 * 1 2 3 24 24 H 1.09005 * 109.46736 * 149.98038 * 1 2 3 25 25 H 1.07994 * 120.41777 * 0.04360 * 3 2 1 26 26 H 1.07999 * 119.61663 * 179.97438 * 4 3 2 27 27 H 1.08998 * 110.71782 * 88.05576 * 9 7 6 28 28 H 1.09002 * 110.72108 * 324.78453 * 9 7 6 29 29 H 1.08998 * 109.88590 * 262.77532 * 10 9 7 30 30 H 1.08999 * 109.88363 * 141.61190 * 10 9 7 31 31 H 0.97004 * 119.99883 * 354.99470 * 15 14 12 32 32 H 1.09006 * 110.36371 * 94.48013 * 20 11 10 33 33 H 1.08996 * 110.36812 * 216.80453 * 20 11 10 34 34 H 1.07998 * 120.42264 * 180.27059 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 0.0039 6 6 3.5984 -1.1515 -0.0011 7 6 4.3802 -2.4399 -0.0012 8 1 5.4014 -2.2748 -0.3444 9 6 3.6722 -3.5199 -0.8613 10 6 4.1591 -4.8402 -0.2278 11 7 4.5862 -4.5340 1.1453 12 6 5.1036 -5.4330 2.0394 13 1 5.5379 -5.0851 2.9649 14 6 5.0698 -6.7915 1.7561 15 7 5.8155 -7.6268 2.4478 16 14 3.9658 -7.4340 0.3931 17 1 4.0091 -8.9184 0.3794 18 1 2.5714 -6.9818 0.6308 19 1 4.4391 -6.9130 -0.9144 20 6 4.3593 -3.1002 1.4024 21 6 2.2167 -1.1909 -0.0005 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8899 -0.5142 25 1 1.6966 2.1377 0.0007 26 1 4.1582 2.0755 -0.0010 27 1 3.9882 -3.4521 -1.9022 28 1 2.5890 -3.4293 -0.7792 29 1 4.9994 -5.2370 -0.7975 30 1 3.3454 -5.5651 -0.2099 31 1 6.4421 -7.2868 3.1056 32 1 3.3916 -2.9491 1.8810 33 1 5.1580 -2.6951 2.0237 34 1 1.6965 -2.1374 -0.0002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576716497.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:51 Heat of formation + Delta-G solvation = 62.408323 kcal Electronic energy + Delta-G solvation = -15971.569503 eV Core-core repulsion = 13484.133481 eV Total energy + Delta-G solvation = -2487.436022 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.38757 -37.69415 -34.05545 -33.14834 -31.41856 -29.27739 -28.18508 -27.83000 -24.31186 -23.39239 -21.69286 -20.65042 -19.74819 -17.44962 -16.59814 -16.41166 -15.38897 -15.05227 -14.76792 -14.29044 -13.61932 -13.16347 -13.05896 -12.94577 -12.72552 -12.49598 -12.34916 -12.10947 -11.42144 -11.20009 -10.97364 -10.74631 -10.57826 -9.96232 -9.47857 -9.33341 -9.30509 -8.97483 -8.83592 -8.64718 -7.00922 -6.28153 -3.18748 1.16095 1.28231 3.44214 3.51133 3.73479 3.80131 4.29554 4.59479 4.65141 4.66953 5.03513 5.07831 5.17610 5.19872 5.33081 5.36156 5.41472 5.46142 5.56930 5.58032 5.80120 5.89051 5.95859 6.04938 6.14104 6.20731 6.32674 6.42776 6.57357 6.75268 6.79558 6.80428 7.69724 8.10979 8.36753 9.07709 9.58842 10.25897 11.22751 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.042363 B = 0.006486 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.799975 B = 4315.706300 C = 4593.157217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.043 4.043 3 C -0.189 4.189 4 C 0.102 3.898 5 N -0.488 5.488 6 C 0.159 3.841 7 C -0.059 4.059 8 H 0.097 0.903 9 C -0.123 4.123 10 C 0.110 3.890 11 N -0.612 5.612 12 C -0.321 4.321 13 H 0.078 0.922 14 C -0.022 4.022 15 N -0.929 5.929 16 Si 1.070 2.930 17 H -0.302 1.302 18 H -0.299 1.299 19 H -0.285 1.285 20 C 0.152 3.848 21 C -0.170 4.170 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.130 0.870 26 H 0.152 0.848 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.024 0.976 33 H 0.048 0.952 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.968 16.624 -7.556 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.051 4.051 3 C -0.209 4.209 4 C -0.055 4.055 5 N -0.197 5.197 6 C 0.022 3.978 7 C -0.079 4.079 8 H 0.115 0.885 9 C -0.161 4.161 10 C -0.015 4.015 11 N -0.340 5.340 12 C -0.448 4.448 13 H 0.096 0.904 14 C -0.221 4.221 15 N -0.571 5.571 16 Si 0.904 3.096 17 H -0.230 1.230 18 H -0.227 1.227 19 H -0.213 1.213 20 C 0.025 3.975 21 C -0.189 4.189 22 H 0.094 0.906 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.148 0.852 26 H 0.170 0.830 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.527 15.172 -8.206 19.705 hybrid contribution -0.451 1.583 0.840 1.848 sum -9.977 16.755 -7.366 20.846 Atomic orbital electron populations 1.20819 0.90431 1.03124 1.02862 1.20321 0.96639 0.93000 0.95137 1.21951 0.95707 0.98388 1.04876 1.22702 0.91698 0.96048 0.95033 1.67524 1.41364 0.98043 1.12812 1.21159 0.90929 0.93282 0.92446 1.21394 0.99130 0.88606 0.98800 0.88466 1.22765 0.99931 0.94677 0.98774 1.22000 0.97354 0.94906 0.87190 1.44830 1.75086 1.04418 1.09636 1.20192 1.35656 0.88013 1.00947 0.90373 1.25842 1.01621 0.91430 1.03228 1.70890 1.23803 1.35995 1.26371 0.83845 0.75597 0.74320 0.75799 1.23017 1.22747 1.21269 1.21548 0.98415 0.85214 0.92335 1.21953 0.95103 0.98856 1.03018 0.90554 0.91231 0.90987 0.85243 0.83029 0.90963 0.91116 0.93372 0.95264 0.92871 0.95855 0.93378 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.06 36.00 0.36 -0.61 16 2 C -0.04 -0.50 5.92 -104.32 -0.62 -1.12 16 3 C -0.19 -2.05 9.82 -39.44 -0.39 -2.44 16 4 C 0.10 1.27 11.18 -17.55 -0.20 1.07 16 5 N -0.49 -7.69 10.27 -9.47 -0.10 -7.79 16 6 C 0.16 2.55 5.89 -82.58 -0.49 2.06 16 7 C -0.06 -1.05 3.42 -89.50 -0.31 -1.36 16 8 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 9 C -0.12 -2.11 6.26 -24.90 -0.16 -2.27 16 10 C 0.11 2.44 4.61 -3.07 -0.01 2.43 16 11 N -0.61 -15.48 3.33 -169.94 -0.57 -16.04 16 12 C -0.32 -9.44 10.56 -15.06 -0.16 -9.60 16 13 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 14 C -0.02 -0.67 5.49 -17.43 -0.10 -0.76 16 15 N -0.93 -29.72 13.70 55.49 0.76 -28.96 16 16 Si 1.07 27.20 24.53 -169.99 -4.17 23.03 16 17 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 18 H -0.30 -7.29 6.84 56.52 0.39 -6.91 16 19 H -0.29 -6.61 5.41 56.52 0.31 -6.30 16 20 C 0.15 3.22 6.68 -2.41 -0.02 3.20 16 21 C -0.17 -2.36 8.68 -39.44 -0.34 -2.70 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 24 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 25 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 26 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.08 5.82 -51.93 -0.30 0.78 16 29 H 0.05 1.11 6.74 -51.93 -0.35 0.76 16 30 H 0.03 0.68 3.88 -51.93 -0.20 0.48 16 31 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 32 H 0.02 0.49 7.90 -51.93 -0.41 0.08 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.14 1.82 6.27 -52.49 -0.33 1.49 16 LS Contribution 272.04 15.07 4.10 4.10 Total: -1.00 -33.24 272.04 -7.04 -40.29 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -4.66 Total: -2.52 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -2.41 Total: -12.11 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.10 Total: -52.79 kcal Atomic # 14 Polarization: 27.20 SS G_CDS: -4.17 Total: 23.03 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.24 -7.04 -40.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576716497.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.694 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds