Wall clock time and date at job start Mon Mar 30 2020 02:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38674 * 120.78753 * 2 1 4 4 C 1.38189 * 119.16331 * 180.02562 * 3 2 1 5 5 N 1.31889 * 120.76252 * 359.74826 * 4 3 2 6 6 C 1.31851 * 121.72690 * 0.51927 * 5 4 3 7 7 C 1.50703 * 119.61927 * 179.75890 * 6 5 4 8 8 H 1.08999 * 110.88405 * 340.05040 * 7 6 5 9 9 C 1.55159 * 111.00260 * 216.17416 * 7 6 5 10 10 C 1.54321 * 102.94091 * 206.42040 * 9 7 6 11 11 N 1.47019 * 107.27278 * 22.19240 * 10 9 7 12 12 C 1.36939 * 125.64977 * 181.02180 * 11 10 9 13 13 H 1.07998 * 119.99660 * 169.93796 * 12 11 10 14 14 C 1.38811 * 120.00040 * 349.93314 * 12 11 10 15 15 N 1.31615 * 119.99918 * 164.82191 * 14 12 11 16 16 Si 1.86797 * 119.99661 * 344.82033 * 14 12 11 17 17 H 1.48501 * 109.46902 * 185.53296 * 16 14 12 18 18 H 1.48499 * 109.47537 * 305.52818 * 16 14 12 19 19 H 1.48496 * 109.47259 * 65.53591 * 16 14 12 20 20 C 1.47430 * 108.70380 * 1.28673 * 11 10 9 21 21 C 1.38232 * 120.76486 * 359.47484 * 6 5 4 22 22 H 1.08999 * 109.47331 * 269.97977 * 1 2 3 23 23 H 1.08997 * 109.47093 * 29.97998 * 1 2 3 24 24 H 1.09005 * 109.46736 * 149.98038 * 1 2 3 25 25 H 1.07994 * 120.41777 * 0.04360 * 3 2 1 26 26 H 1.07999 * 119.61663 * 179.97438 * 4 3 2 27 27 H 1.08998 * 110.71782 * 88.05576 * 9 7 6 28 28 H 1.09002 * 110.72108 * 324.78453 * 9 7 6 29 29 H 1.08998 * 109.88590 * 262.77532 * 10 9 7 30 30 H 1.08999 * 109.88363 * 141.61190 * 10 9 7 31 31 H 0.97004 * 119.99883 * 354.99470 * 15 14 12 32 32 H 1.09006 * 110.36371 * 94.48013 * 20 11 10 33 33 H 1.08996 * 110.36812 * 216.80453 * 20 11 10 34 34 H 1.07998 * 120.42264 * 180.27059 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 0.0039 6 6 3.5984 -1.1515 -0.0011 7 6 4.3802 -2.4399 -0.0012 8 1 5.4014 -2.2748 -0.3444 9 6 3.6722 -3.5199 -0.8613 10 6 4.1591 -4.8402 -0.2278 11 7 4.5862 -4.5340 1.1453 12 6 5.1036 -5.4330 2.0394 13 1 5.5379 -5.0851 2.9649 14 6 5.0698 -6.7915 1.7561 15 7 5.8155 -7.6268 2.4478 16 14 3.9658 -7.4340 0.3931 17 1 4.0091 -8.9184 0.3794 18 1 2.5714 -6.9818 0.6308 19 1 4.4391 -6.9130 -0.9144 20 6 4.3593 -3.1002 1.4024 21 6 2.2167 -1.1909 -0.0005 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8899 -0.5142 25 1 1.6966 2.1377 0.0007 26 1 4.1582 2.0755 -0.0010 27 1 3.9882 -3.4521 -1.9022 28 1 2.5890 -3.4293 -0.7792 29 1 4.9994 -5.2370 -0.7975 30 1 3.3454 -5.5651 -0.2099 31 1 6.4421 -7.2868 3.1056 32 1 3.3916 -2.9491 1.8810 33 1 5.1580 -2.6951 2.0237 34 1 1.6965 -2.1374 -0.0002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576716497.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:51 Heat of formation + Delta-G solvation = 39.870654 kcal Electronic energy + Delta-G solvation = -15972.546809 eV Core-core repulsion = 13484.133481 eV Total energy + Delta-G solvation = -2488.413328 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.44401 -39.29276 -35.26694 -34.74117 -33.09707 -30.89497 -29.69058 -28.63945 -26.12910 -24.58687 -22.82666 -22.52572 -21.10889 -19.59730 -17.75549 -17.50259 -16.97874 -16.41498 -15.96117 -15.59699 -15.18617 -14.92601 -14.38485 -14.16956 -13.92451 -13.61327 -13.48938 -13.28834 -13.06451 -12.97558 -12.31534 -12.25627 -12.15093 -11.65024 -11.42358 -11.04446 -10.71989 -10.38995 -10.35206 -9.85901 -9.13410 -8.68611 -5.50681 0.17503 0.35448 1.40798 1.50634 1.73387 2.55213 2.79353 2.99748 3.17866 3.44884 3.61665 3.86946 3.90533 3.94257 4.11843 4.16480 4.26659 4.35621 4.54703 4.62923 4.67548 4.71032 4.80414 4.84328 4.89644 4.96049 5.00776 5.13998 5.21100 5.35122 5.44054 5.50019 5.84524 6.06611 6.79358 7.10660 7.39600 8.05765 8.84321 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.042363 B = 0.006486 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.799975 B = 4315.706300 C = 4593.157217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.044 4.044 3 C -0.177 4.177 4 C 0.092 3.908 5 N -0.522 5.522 6 C 0.135 3.865 7 C -0.044 4.044 8 H 0.084 0.916 9 C -0.109 4.109 10 C 0.099 3.901 11 N -0.633 5.633 12 C -0.317 4.317 13 H 0.042 0.958 14 C -0.079 4.079 15 N -0.963 5.963 16 Si 1.110 2.890 17 H -0.311 1.311 18 H -0.280 1.280 19 H -0.248 1.248 20 C 0.150 3.850 21 C -0.179 4.179 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.167 0.833 26 H 0.179 0.821 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.038 0.962 30 H 0.033 0.967 31 H 0.246 0.754 32 H 0.029 0.971 33 H 0.027 0.973 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.719 18.942 -9.824 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.052 4.052 3 C -0.196 4.196 4 C -0.065 4.065 5 N -0.232 5.232 6 C -0.002 4.002 7 C -0.065 4.065 8 H 0.102 0.898 9 C -0.147 4.147 10 C -0.025 4.025 11 N -0.361 5.361 12 C -0.445 4.445 13 H 0.060 0.940 14 C -0.271 4.271 15 N -0.607 5.607 16 Si 0.937 3.063 17 H -0.240 1.240 18 H -0.207 1.207 19 H -0.172 1.172 20 C 0.024 3.976 21 C -0.198 4.198 22 H 0.102 0.898 23 H 0.110 0.890 24 H 0.095 0.905 25 H 0.185 0.815 26 H 0.196 0.804 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.284 17.548 -10.488 23.850 hybrid contribution 0.424 1.052 1.650 2.003 sum -11.860 18.600 -8.838 23.764 Atomic orbital electron populations 1.20900 0.87903 1.04549 1.03715 1.20744 0.98439 0.92363 0.93650 1.22379 0.95149 0.99778 1.02337 1.23238 0.92989 0.95853 0.94431 1.67426 1.42745 0.98980 1.14042 1.20822 0.91581 0.92487 0.95273 1.21105 0.99225 0.90096 0.96029 0.89797 1.22752 1.01238 0.91101 0.99576 1.22188 0.96977 0.97886 0.85446 1.44901 1.75186 1.05425 1.10559 1.20080 1.34642 0.89199 1.00587 0.93990 1.27244 1.02440 0.92002 1.05409 1.71001 1.25316 1.36644 1.27696 0.83412 0.74705 0.73266 0.74954 1.24011 1.20738 1.17248 1.21628 0.97689 0.83452 0.94843 1.22038 0.94274 1.00170 1.03367 0.89812 0.89019 0.90472 0.81547 0.80396 0.88111 0.88710 0.94360 0.95014 0.94465 0.95269 0.95424 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.06 71.23 0.72 -0.69 16 2 C -0.04 -0.86 5.92 -19.67 -0.12 -0.97 16 3 C -0.18 -3.10 9.82 22.36 0.22 -2.88 16 4 C 0.09 2.00 11.18 84.67 0.95 2.95 16 5 N -0.52 -15.68 10.27 -183.87 -1.89 -17.57 16 6 C 0.14 4.11 5.89 42.56 0.25 4.36 16 7 C -0.04 -1.54 3.42 -10.07 -0.03 -1.58 16 8 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 9 C -0.11 -3.44 6.26 31.78 0.20 -3.24 16 10 C 0.10 4.21 4.61 86.73 0.40 4.61 16 11 N -0.63 -32.30 3.33 -691.56 -2.30 -34.60 16 12 C -0.32 -19.32 10.56 84.03 0.89 -18.44 16 13 H 0.04 2.78 8.06 -2.91 -0.02 2.76 16 14 C -0.08 -4.84 5.49 84.86 0.47 -4.38 16 15 N -0.96 -63.87 13.70 21.65 0.30 -63.58 16 16 Si 1.11 54.50 24.53 68.60 1.68 56.18 16 17 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 18 H -0.28 -12.80 6.84 99.48 0.68 -12.12 16 19 H -0.25 -10.62 5.41 99.48 0.54 -10.09 16 20 C 0.15 6.44 6.68 86.93 0.58 7.02 16 21 C -0.18 -4.49 8.68 22.36 0.19 -4.30 16 22 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 23 H 0.09 0.75 8.10 -2.39 -0.02 0.73 16 24 H 0.08 0.90 8.10 -2.38 -0.02 0.88 16 25 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 26 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.09 2.56 5.82 -2.39 -0.01 2.54 16 29 H 0.04 1.70 6.74 -2.39 -0.02 1.68 16 30 H 0.03 1.38 3.88 -2.39 -0.01 1.37 16 31 H 0.25 16.48 8.73 -92.71 -0.81 15.67 16 32 H 0.03 1.23 7.90 -2.38 -0.02 1.21 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.14 3.32 6.27 -2.91 -0.02 3.30 16 Total: -1.00 -75.24 272.04 3.35 -71.89 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 0.85 Total: 5.20 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 4.71 Total: -17.53 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -3.89 Total: -115.75 kcal Atomic # 14 Polarization: 54.50 SS G_CDS: 1.68 Total: 56.18 kcal Total: -75.24 3.35 -71.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576716497.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.759 kcal (2) G-P(sol) polarization free energy of solvation -75.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds