Wall clock time and date at job start Mon Mar 30 2020 02:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38678 * 120.78948 * 2 1 4 4 C 1.38178 * 119.16013 * 180.02562 * 3 2 1 5 5 N 1.31883 * 120.76821 * 0.02729 * 4 3 2 6 6 C 1.31855 * 121.72372 * 359.97438 * 5 4 3 7 7 C 1.50709 * 119.61380 * 180.02562 * 6 5 4 8 8 H 1.08994 * 110.88791 * 337.42853 * 7 6 5 9 9 C 1.55158 * 111.03487 * 101.33116 * 7 6 5 10 10 C 1.54335 * 103.01765 * 153.39223 * 9 7 6 11 11 N 1.47021 * 107.26593 * 338.13761 * 10 9 7 12 12 C 1.36944 * 125.64687 * 178.84679 * 11 10 9 13 13 H 1.07995 * 119.99591 * 176.14779 * 12 11 10 14 14 C 1.38810 * 119.99681 * 356.15043 * 12 11 10 15 15 N 1.31618 * 119.99763 * 211.26444 * 14 12 11 16 16 Si 1.86799 * 120.00276 * 31.26655 * 14 12 11 17 17 H 1.48496 * 109.47016 * 275.30530 * 16 14 12 18 18 H 1.48503 * 109.47142 * 35.30466 * 16 14 12 19 19 H 1.48498 * 109.47218 * 155.30252 * 16 14 12 20 20 C 1.47417 * 108.70470 * 358.59044 * 11 10 9 21 21 C 1.38217 * 120.76343 * 0.27272 * 6 5 4 22 22 H 1.08997 * 109.47836 * 89.99331 * 1 2 3 23 23 H 1.09005 * 109.47003 * 210.00273 * 1 2 3 24 24 H 1.09007 * 109.47099 * 329.99494 * 1 2 3 25 25 H 1.07994 * 120.41631 * 0.02562 * 3 2 1 26 26 H 1.08001 * 119.61316 * 179.97438 * 4 3 2 27 27 H 1.08999 * 110.71835 * 271.95229 * 9 7 6 28 28 H 1.09000 * 110.71878 * 35.22572 * 9 7 6 29 29 H 1.09004 * 109.99038 * 218.66775 * 10 9 7 30 30 H 1.09000 * 109.77859 * 97.49465 * 10 9 7 31 31 H 0.97003 * 120.00143 * 354.97765 * 15 14 12 32 32 H 1.08998 * 110.37411 * 143.19380 * 20 11 10 33 33 H 1.09003 * 110.36394 * 265.40410 * 20 11 10 34 34 H 1.08006 * 120.42189 * 179.70373 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 -0.0016 6 6 3.5982 -1.1516 -0.0017 7 6 4.3801 -2.4400 -0.0023 8 1 5.3854 -2.2844 -0.3935 9 6 4.4262 -3.0641 1.4175 10 6 4.6038 -4.5700 1.1297 11 7 4.1296 -4.8112 -0.2409 12 6 4.1384 -6.0183 -0.8876 13 1 3.7096 -6.1049 -1.8750 14 6 4.6984 -7.1303 -0.2739 15 7 5.2688 -8.0665 -1.0024 16 14 4.6425 -7.2982 1.5856 17 1 5.7849 -6.5619 2.1837 18 1 3.3676 -6.7327 2.0956 19 1 4.7303 -8.7336 1.9559 20 6 3.6373 -3.5397 -0.8015 21 6 2.2166 -1.1908 -0.0063 22 1 -0.3635 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 1.6967 2.1377 0.0004 26 1 4.1582 2.0754 -0.0010 27 1 5.2730 -2.6746 1.9826 28 1 3.4914 -2.8843 1.9483 29 1 4.0141 -5.1562 1.8345 30 1 5.6570 -4.8392 1.2103 31 1 5.2342 -8.0162 -1.9705 32 1 3.8844 -3.4712 -1.8608 33 1 2.5603 -3.4535 -0.6576 34 1 1.6964 -2.1373 -0.0111 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576716500.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:52 Heat of formation + Delta-G solvation = 37.518087 kcal Electronic energy + Delta-G solvation = -15958.159607 eV Core-core repulsion = 13469.644264 eV Total energy + Delta-G solvation = -2488.515343 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.44297 -39.23577 -35.25136 -34.71080 -33.05058 -31.02980 -29.53932 -28.56483 -26.24787 -24.38200 -23.07741 -22.27425 -21.10398 -19.52576 -17.73001 -17.48350 -16.90863 -16.43108 -15.93062 -15.52504 -15.23185 -15.02689 -14.47948 -14.05620 -13.81619 -13.60419 -13.48008 -13.32382 -13.04131 -12.92845 -12.35727 -12.26372 -12.12209 -11.87820 -11.55085 -11.08642 -10.56821 -10.39324 -10.35705 -9.84323 -9.13756 -8.72412 -5.38300 0.17725 0.34785 1.40459 1.50874 1.69933 2.51984 2.79709 2.89978 3.22617 3.44848 3.68000 3.81471 3.88800 3.96267 4.10178 4.19982 4.29943 4.37030 4.54843 4.63921 4.69399 4.72682 4.79173 4.84393 4.89382 4.98287 5.02866 5.15230 5.19668 5.34700 5.43597 5.56240 5.84332 6.07711 6.81711 7.09719 7.47383 8.13343 8.81084 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.042872 B = 0.006289 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.953678 B = 4451.008485 C = 4551.355553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.044 4.044 3 C -0.177 4.177 4 C 0.094 3.906 5 N -0.518 5.518 6 C 0.138 3.862 7 C -0.045 4.045 8 H 0.082 0.918 9 C -0.100 4.100 10 C 0.097 3.903 11 N -0.631 5.631 12 C -0.333 4.333 13 H 0.048 0.952 14 C -0.073 4.073 15 N -0.945 5.945 16 Si 1.106 2.894 17 H -0.269 1.269 18 H -0.271 1.271 19 H -0.303 1.303 20 C 0.144 3.856 21 C -0.184 4.184 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.168 0.832 26 H 0.182 0.818 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.030 0.970 31 H 0.249 0.751 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.057 21.091 5.746 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.052 4.052 3 C -0.196 4.196 4 C -0.063 4.063 5 N -0.228 5.228 6 C 0.001 3.999 7 C -0.065 4.065 8 H 0.100 0.900 9 C -0.138 4.138 10 C -0.028 4.028 11 N -0.358 5.358 12 C -0.461 4.461 13 H 0.066 0.934 14 C -0.268 4.268 15 N -0.588 5.588 16 Si 0.932 3.068 17 H -0.195 1.195 18 H -0.198 1.198 19 H -0.232 1.232 20 C 0.018 3.982 21 C -0.203 4.203 22 H 0.104 0.896 23 H 0.090 0.910 24 H 0.111 0.889 25 H 0.185 0.815 26 H 0.199 0.801 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.673 20.077 6.929 22.582 hybrid contribution -1.160 0.266 -1.979 2.310 sum -8.833 20.343 4.950 22.723 Atomic orbital electron populations 1.20899 0.88090 1.04372 1.03747 1.20728 0.98358 0.92388 0.93694 1.22375 0.95242 0.99618 1.02371 1.23265 0.92903 0.95908 0.94221 1.67428 1.42500 0.98781 1.14061 1.20769 0.91388 0.92567 0.95174 1.21028 0.98751 0.89660 0.97112 0.89990 1.22527 1.03479 0.92307 0.95480 1.21938 0.97560 0.96674 0.86598 1.44851 1.74090 1.04447 1.12446 1.19873 1.39074 0.87800 0.99363 0.93387 1.26954 0.95604 0.93899 1.10338 1.71039 1.39196 1.42161 1.06425 0.83359 0.77614 0.74387 0.71392 1.19546 1.19753 1.23184 1.21762 0.96422 0.84228 0.95777 1.22047 0.94570 1.00018 1.03701 0.89648 0.90969 0.88899 0.81457 0.80104 0.88842 0.89832 0.94422 0.95185 0.94136 0.95116 0.93954 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.06 71.24 0.72 -0.84 16 2 C -0.04 -0.89 5.92 -19.67 -0.12 -1.01 16 3 C -0.18 -3.10 9.82 22.36 0.22 -2.89 16 4 C 0.09 2.00 11.18 84.67 0.95 2.95 16 5 N -0.52 -15.24 10.27 -183.89 -1.89 -17.13 16 6 C 0.14 4.25 5.89 42.55 0.25 4.50 16 7 C -0.05 -1.61 3.42 -10.14 -0.03 -1.65 16 8 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 9 C -0.10 -3.39 6.41 31.79 0.20 -3.19 16 10 C 0.10 4.25 4.83 86.73 0.42 4.67 16 11 N -0.63 -32.17 3.38 -691.98 -2.34 -34.50 16 12 C -0.33 -20.06 10.43 84.03 0.88 -19.18 16 13 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 14 C -0.07 -4.47 5.45 84.86 0.46 -4.01 16 15 N -0.95 -61.81 13.70 21.65 0.30 -61.51 16 16 Si 1.11 54.75 24.66 68.60 1.69 56.44 16 17 H -0.27 -12.31 6.37 99.48 0.63 -11.67 16 18 H -0.27 -12.34 6.35 99.48 0.63 -11.70 16 19 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 20 C 0.14 6.02 6.51 86.86 0.57 6.59 16 21 C -0.18 -4.92 8.86 22.36 0.20 -4.72 16 22 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.07 1.01 8.10 -2.38 -0.02 0.99 16 24 H 0.09 0.85 8.10 -2.38 -0.02 0.83 16 25 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 26 H 0.18 2.61 8.06 -2.91 -0.02 2.58 16 27 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.08 2.54 8.01 -2.39 -0.02 2.53 16 29 H 0.04 1.67 4.45 -2.38 -0.01 1.66 16 30 H 0.03 1.41 6.70 -2.39 -0.02 1.39 16 31 H 0.25 16.37 8.73 -92.71 -0.81 15.56 16 32 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.04 1.66 5.71 -2.39 -0.01 1.64 16 34 H 0.13 3.65 6.09 -2.91 -0.02 3.63 16 Total: -1.00 -72.90 273.25 3.37 -69.53 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 0.90 Total: 5.94 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 4.71 Total: -18.77 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -3.93 Total: -113.14 kcal Atomic # 14 Polarization: 54.75 SS G_CDS: 1.69 Total: 56.44 kcal Total: -72.90 3.37 -69.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576716500.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.052 kcal (2) G-P(sol) polarization free energy of solvation -72.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds