Wall clock time and date at job start Mon Mar 30 2020 03:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31030 * 1 3 3 Si 1.86801 * 119.99933 * 2 1 4 4 H 1.48504 * 109.47203 * 240.00428 * 3 2 1 5 5 H 1.48504 * 109.47229 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47238 * 120.00145 * 3 2 1 7 7 C 1.39682 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99783 * 179.97438 * 7 2 1 9 9 C 1.41168 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.38034 * 122.77061 * 180.02562 * 9 7 2 11 11 S 1.70998 * 108.87158 * 179.97438 * 10 9 7 12 12 C 1.75912 * 90.76944 * 0.02562 * 11 10 9 13 13 C 1.47828 * 125.06178 * 180.26674 * 12 11 10 14 14 C 1.40281 * 121.15952 * 359.69461 * 13 12 11 15 15 C 1.38312 * 117.80538 * 179.97438 * 14 13 12 16 16 N 1.32019 * 119.99210 * 0.02562 * 15 14 13 17 17 N 1.28268 * 122.55379 * 359.97438 * 16 15 14 18 18 C 1.31812 * 122.33987 * 359.72669 * 17 16 15 19 19 N 1.29814 * 109.87510 * 359.97438 * 12 11 10 20 20 H 0.97005 * 119.99651 * 359.97438 * 1 2 3 21 21 H 1.07997 * 125.56550 * 359.97438 * 10 9 7 22 22 H 1.08003 * 121.09234 * 359.97438 * 14 13 12 23 23 H 1.08006 * 120.00321 * 179.97438 * 15 14 13 24 24 H 1.07996 * 120.18642 * 180.29705 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 3.0980 1.6965 -1.2126 5 1 1.2793 2.7465 -0.0006 6 1 3.0981 1.6964 1.2125 7 6 2.0087 -1.2097 -0.0005 8 1 3.0887 -1.2096 -0.0010 9 6 1.3029 -2.4322 -0.0005 10 6 1.9344 -3.6596 -0.0005 11 16 0.7487 -4.8917 0.0002 12 6 -0.5351 -3.6891 -0.0003 13 6 -1.9821 -3.9916 0.0056 14 6 -2.4469 -5.3152 0.0059 15 6 -3.8150 -5.5185 0.0121 16 7 -4.6358 -4.4845 0.0170 17 7 -4.2182 -3.2717 0.0167 18 6 -2.9357 -2.9676 0.0169 19 7 -0.0225 -2.4964 -0.0004 20 1 -0.4850 0.8401 0.0004 21 1 3.0030 -3.8162 -0.0009 22 1 -1.7591 -6.1479 0.0014 23 1 -4.2117 -6.5230 0.0121 24 1 -2.6227 -1.9340 0.0215 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000675051297.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:28 Heat of formation + Delta-G solvation = 93.505765 kcal Electronic energy + Delta-G solvation = -13135.706707 eV Core-core repulsion = 10755.279943 eV Total energy + Delta-G solvation = -2380.426764 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.53160 -38.04567 -33.86264 -32.85296 -32.18673 -29.13775 -25.88189 -25.18928 -24.15737 -21.89023 -19.35511 -18.08399 -16.66700 -16.28210 -15.86855 -15.36144 -14.85406 -14.59427 -13.76963 -13.17948 -13.09416 -12.78196 -11.96786 -11.74210 -11.32495 -10.87885 -10.67561 -10.53011 -10.16507 -9.94525 -9.80506 -9.47939 -9.31094 -8.38035 -8.20023 -7.51067 -6.70448 -4.55169 0.68053 1.24039 2.27661 2.50158 2.99859 3.03051 3.04837 3.34060 3.86677 3.89090 4.22743 4.47670 4.52648 4.89514 4.97589 5.24876 5.31137 5.75587 5.84375 6.28919 6.52184 6.61025 6.85009 7.05015 7.21225 8.00277 8.32122 8.69195 9.02174 9.29508 10.18140 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.031525 B = 0.008353 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.971252 B = 3351.428681 C = 4229.552635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.071 3.929 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.429 4.429 8 H 0.087 0.913 9 C 0.224 3.776 10 C -0.438 4.438 11 S 0.012 5.988 12 C 0.051 3.949 13 C 0.019 3.981 14 C -0.123 4.123 15 C 0.039 3.961 16 N -0.261 5.261 17 N -0.248 5.248 18 C 0.078 3.922 19 N -0.371 5.371 20 H 0.278 0.722 21 H 0.145 0.855 22 H 0.148 0.852 23 H 0.170 0.830 24 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 -5.996 0.018 6.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.152 4.152 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.100 3.900 10 C -0.579 4.579 11 S 0.262 5.738 12 C -0.226 4.226 13 C 0.004 3.996 14 C -0.154 4.154 15 C -0.124 4.124 16 N -0.104 5.104 17 N -0.088 5.088 18 C -0.090 4.090 19 N -0.087 5.087 20 H 0.089 0.911 21 H 0.163 0.837 22 H 0.166 0.834 23 H 0.187 0.813 24 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.160 -5.884 0.022 7.206 hybrid contribution 2.699 0.974 -0.010 2.870 sum -1.461 -4.910 0.012 5.122 Atomic orbital electron populations 1.70033 1.07090 1.28643 1.31662 1.25986 0.95050 1.01258 0.92894 0.86248 0.79908 0.79985 0.79889 1.18932 1.20145 1.18927 1.18953 0.94245 0.88125 1.44949 0.89494 1.17851 0.85028 0.93291 0.93830 1.25506 1.01539 0.93882 1.36927 1.82458 1.00772 1.14952 1.75654 1.25438 0.94825 0.92006 1.10345 1.19202 0.91337 0.93848 0.95260 1.22416 0.97219 0.96896 0.98874 1.24061 0.90803 1.00694 0.96871 1.72816 1.32780 0.95089 1.09691 1.72950 1.14933 1.11693 1.09231 1.24795 0.88898 1.02341 0.92936 1.67353 1.12723 1.18752 1.09839 0.91117 0.83737 0.83415 0.81297 0.79415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.13 11.69 55.53 0.65 -18.48 14 2 C 0.07 1.76 5.49 -17.35 -0.10 1.66 14 3 Si 0.92 18.29 29.56 -169.99 -5.02 13.27 14 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 14 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 14 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 14 7 C -0.43 -11.17 9.23 -37.93 -0.35 -11.52 14 8 H 0.09 2.14 7.84 -52.49 -0.41 1.73 14 9 C 0.22 5.90 6.45 -86.46 -0.56 5.34 14 10 C -0.44 -10.41 10.99 30.66 0.34 -10.07 14 11 S 0.01 0.24 22.25 -107.50 -2.39 -2.16 14 12 C 0.05 1.13 7.33 -14.48 -0.11 1.03 14 13 C 0.02 0.36 5.92 -104.57 -0.62 -0.26 14 14 C -0.12 -1.86 9.77 -38.79 -0.38 -2.24 14 15 C 0.04 0.55 11.30 -17.44 -0.20 0.35 14 16 N -0.26 -4.50 11.48 30.51 0.35 -4.15 14 17 N -0.25 -4.70 11.49 30.80 0.35 -4.34 14 18 C 0.08 1.50 11.00 -16.93 -0.19 1.32 14 19 N -0.37 -9.47 8.08 -9.16 -0.07 -9.54 14 20 H 0.28 6.47 8.30 -40.82 -0.34 6.13 14 21 H 0.14 3.23 8.06 -52.49 -0.42 2.81 14 22 H 0.15 1.88 7.47 -52.48 -0.39 1.49 14 23 H 0.17 1.60 8.06 -52.48 -0.42 1.18 14 24 H 0.19 3.83 7.89 -52.49 -0.41 3.42 14 LS Contribution 240.97 15.07 3.63 3.63 Total: -1.00 -28.21 240.97 -5.86 -34.07 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -1.20 Total: 2.10 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.15 Total: -14.40 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 1.28 Total: -36.52 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.02 Total: 13.27 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -2.39 Total: -2.16 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.21 -5.86 -34.07 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675051297.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.576 kcal (2) G-P(sol) polarization free energy of solvation -28.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds