Wall clock time and date at job start Mon Mar 30 2020 03:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31030 * 1 3 3 Si 1.86801 * 119.99933 * 2 1 4 4 H 1.48504 * 109.47203 * 240.00428 * 3 2 1 5 5 H 1.48504 * 109.47229 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47238 * 120.00145 * 3 2 1 7 7 C 1.39682 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99783 * 179.97438 * 7 2 1 9 9 C 1.41168 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.38034 * 122.77061 * 180.02562 * 9 7 2 11 11 S 1.70998 * 108.87158 * 179.97438 * 10 9 7 12 12 C 1.75912 * 90.76944 * 0.02562 * 11 10 9 13 13 C 1.47828 * 125.06178 * 180.26674 * 12 11 10 14 14 C 1.40281 * 121.15952 * 359.69461 * 13 12 11 15 15 C 1.38312 * 117.80538 * 179.97438 * 14 13 12 16 16 N 1.32019 * 119.99210 * 0.02562 * 15 14 13 17 17 N 1.28268 * 122.55379 * 359.97438 * 16 15 14 18 18 C 1.31812 * 122.33987 * 359.72669 * 17 16 15 19 19 N 1.29814 * 109.87510 * 359.97438 * 12 11 10 20 20 H 0.97005 * 119.99651 * 359.97438 * 1 2 3 21 21 H 1.07997 * 125.56550 * 359.97438 * 10 9 7 22 22 H 1.08003 * 121.09234 * 359.97438 * 14 13 12 23 23 H 1.08006 * 120.00321 * 179.97438 * 15 14 13 24 24 H 1.07996 * 120.18642 * 180.29705 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 3.0980 1.6965 -1.2126 5 1 1.2793 2.7465 -0.0006 6 1 3.0981 1.6964 1.2125 7 6 2.0087 -1.2097 -0.0005 8 1 3.0887 -1.2096 -0.0010 9 6 1.3029 -2.4322 -0.0005 10 6 1.9344 -3.6596 -0.0005 11 16 0.7487 -4.8917 0.0002 12 6 -0.5351 -3.6891 -0.0003 13 6 -1.9821 -3.9916 0.0056 14 6 -2.4469 -5.3152 0.0059 15 6 -3.8150 -5.5185 0.0121 16 7 -4.6358 -4.4845 0.0170 17 7 -4.2182 -3.2717 0.0167 18 6 -2.9357 -2.9676 0.0169 19 7 -0.0225 -2.4964 -0.0004 20 1 -0.4850 0.8401 0.0004 21 1 3.0030 -3.8162 -0.0009 22 1 -1.7591 -6.1479 0.0014 23 1 -4.2117 -6.5230 0.0121 24 1 -2.6227 -1.9340 0.0215 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000675051297.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:28 Heat of formation + Delta-G solvation = 75.255376 kcal Electronic energy + Delta-G solvation = -13136.498104 eV Core-core repulsion = 10755.279943 eV Total energy + Delta-G solvation = -2381.218161 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.90069 -39.81783 -35.52397 -34.44816 -33.54331 -30.88917 -27.72135 -26.72833 -25.52048 -23.49631 -21.09122 -19.76670 -18.16598 -17.74754 -17.32563 -17.08502 -16.44670 -15.99541 -15.27795 -14.84918 -14.67096 -14.27115 -13.69011 -13.46956 -12.94520 -12.65835 -12.32417 -11.92514 -11.70777 -11.67308 -11.12426 -11.02414 -10.85768 -10.09504 -9.91515 -9.27004 -8.50337 -6.44799 -0.78086 -0.07057 0.62228 0.81339 1.37739 1.42231 1.49966 1.57508 2.21763 2.27067 2.66492 3.05098 3.20144 3.42271 3.53167 3.71432 3.97662 4.39772 4.55215 4.85006 5.00229 5.05124 5.21756 5.25290 5.36650 6.10793 6.46150 6.82009 7.52386 7.67621 8.39266 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.031525 B = 0.008353 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.971252 B = 3351.428681 C = 4229.552635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.028 3.972 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.469 4.469 8 H 0.087 0.913 9 C 0.194 3.806 10 C -0.468 4.468 11 S 0.097 5.903 12 C 0.047 3.953 13 C -0.012 4.012 14 C -0.095 4.095 15 C 0.058 3.942 16 N -0.275 5.275 17 N -0.266 5.266 18 C 0.070 3.930 19 N -0.418 5.418 20 H 0.282 0.718 21 H 0.150 0.850 22 H 0.181 0.819 23 H 0.227 0.773 24 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.592 -8.017 0.018 8.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.192 4.192 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.503 4.503 8 H 0.106 0.894 9 C 0.069 3.931 10 C -0.608 4.608 11 S 0.348 5.652 12 C -0.230 4.230 13 C -0.027 4.027 14 C -0.127 4.127 15 C -0.106 4.106 16 N -0.116 5.116 17 N -0.106 5.106 18 C -0.098 4.098 19 N -0.134 5.134 20 H 0.092 0.908 21 H 0.167 0.833 22 H 0.198 0.802 23 H 0.243 0.757 24 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.633 -7.932 0.022 9.186 hybrid contribution 2.731 1.328 -0.010 3.037 sum -1.902 -6.604 0.012 6.872 Atomic orbital electron populations 1.70139 1.08502 1.29620 1.32425 1.26860 0.95855 1.04429 0.92013 0.85146 0.78515 0.75407 0.79967 1.18426 1.19332 1.18411 1.19297 0.94592 0.89424 1.47025 0.89447 1.18248 0.85985 0.94348 0.94503 1.25851 1.03014 0.95125 1.36799 1.81838 0.97606 1.11653 1.74060 1.26026 0.96733 0.92188 1.08096 1.19270 0.89693 0.95681 0.98056 1.22818 0.98411 0.95751 0.95689 1.24871 0.89887 1.02026 0.93773 1.72754 1.33767 0.95236 1.09882 1.72945 1.14422 1.13123 1.10147 1.24479 0.89516 1.01741 0.94016 1.67347 1.12580 1.20872 1.12644 0.90779 0.83255 0.80185 0.75695 0.81781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -41.57 11.69 21.79 0.25 -41.32 14 2 C 0.03 1.42 5.49 85.16 0.47 1.89 14 3 Si 0.99 38.36 29.56 68.60 2.03 40.39 14 4 H -0.26 -9.76 7.11 99.48 0.71 -9.06 14 5 H -0.27 -9.95 7.11 99.48 0.71 -9.24 14 6 H -0.26 -9.75 7.11 99.48 0.71 -9.05 14 7 C -0.47 -25.43 9.23 23.34 0.22 -25.21 14 8 H 0.09 4.48 7.84 -2.91 -0.02 4.46 14 9 C 0.19 10.52 6.45 39.68 0.26 10.78 14 10 C -0.47 -22.38 10.99 67.77 0.75 -21.63 14 11 S 0.10 3.74 22.25 -56.49 -1.26 2.48 14 12 C 0.05 2.07 7.33 87.53 0.64 2.71 14 13 C -0.01 -0.44 5.92 -19.83 -0.12 -0.56 14 14 C -0.10 -2.51 9.77 22.78 0.22 -2.29 14 15 C 0.06 1.35 11.30 84.68 0.96 2.31 14 16 N -0.27 -8.76 11.48 -57.40 -0.66 -9.42 14 17 N -0.27 -9.97 11.49 -56.46 -0.65 -10.62 14 18 C 0.07 2.76 11.00 85.11 0.94 3.70 14 19 N -0.42 -22.01 8.08 -182.89 -1.48 -23.49 14 20 H 0.28 13.66 8.30 -92.70 -0.77 12.89 14 21 H 0.15 6.75 8.06 -2.91 -0.02 6.73 14 22 H 0.18 3.56 7.47 -2.91 -0.02 3.54 14 23 H 0.23 2.69 8.06 -2.91 -0.02 2.66 14 24 H 0.16 7.18 7.89 -2.91 -0.02 7.15 14 Total: -1.00 -64.00 240.97 3.80 -60.20 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.24 Total: 10.09 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 4.32 Total: -28.30 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.53 Total: -84.85 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.26 Total: 2.48 kcal Total: -64.00 3.80 -60.20 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675051297.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.456 kcal (2) G-P(sol) polarization free energy of solvation -64.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds