Wall clock time and date at job start Mon Mar 30 2020 03:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36938 * 120.00518 * 2 1 4 4 H 1.07997 * 120.00750 * 202.34978 * 3 2 1 5 5 C 1.38817 * 119.99410 * 22.34914 * 3 2 1 6 6 N 1.31620 * 119.99860 * 11.33890 * 5 3 2 7 7 Si 1.86798 * 119.99895 * 191.33571 * 5 3 2 8 8 H 1.48497 * 109.47089 * 60.00063 * 7 5 3 9 9 H 1.48493 * 109.47306 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47104 * 300.00370 * 7 5 3 11 11 C 1.46504 * 119.99940 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.47210 * 270.00220 * 11 2 1 13 13 N 1.30215 * 121.09166 * 90.02416 * 12 11 2 14 14 S 1.69971 * 105.64939 * 179.72847 * 13 12 11 15 15 C 1.72308 * 94.53080 * 359.97438 * 14 13 12 16 16 Cl 1.73600 * 127.48228 * 179.97438 * 15 14 13 17 17 N 1.31045 * 105.02907 * 0.02562 * 15 14 13 18 18 H 1.08992 * 109.47249 * 274.21488 * 1 2 3 19 19 H 1.08997 * 109.46887 * 34.21652 * 1 2 3 20 20 H 1.08997 * 109.46953 * 154.21034 * 1 2 3 21 21 H 0.96999 * 119.99606 * 179.97438 * 6 5 3 22 22 H 1.09001 * 109.47177 * 150.00165 * 11 2 1 23 23 H 1.09003 * 109.47319 * 30.00165 * 11 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5339 2.3429 0.4572 6 7 0.3841 2.2689 1.0936 7 14 2.3369 4.0047 0.1691 8 1 2.4919 4.2333 -1.2899 9 1 1.4853 5.0733 0.7503 10 1 3.6722 4.0284 0.8184 11 6 2.1975 -1.2688 0.0006 12 6 2.4486 -1.7032 1.4216 13 7 1.5952 -2.4550 2.0557 14 16 2.2637 -2.7072 3.5979 15 6 3.6759 -1.7696 3.2891 16 17 4.9955 -1.4587 4.3734 17 7 3.5370 -1.3412 2.0584 18 1 -0.3633 0.0755 1.0248 19 1 -0.3633 0.8498 -0.5779 20 1 -0.3633 -0.9253 -0.4471 21 1 -0.0460 3.0774 1.4134 22 1 3.1499 -1.1387 -0.5133 23 1 1.6084 -2.0287 -0.5130 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685968109.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:13 Heat of formation + Delta-G solvation = 78.712111 kcal Electronic energy + Delta-G solvation = -12218.649683 eV Core-core repulsion = 9835.148568 eV Total energy + Delta-G solvation = -2383.501115 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.008 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.75429 -37.00654 -35.55409 -32.07265 -31.08829 -27.67902 -25.93228 -24.40313 -21.66178 -19.49075 -18.55236 -16.92434 -16.09058 -15.28154 -14.79585 -13.88310 -13.57971 -13.31223 -12.27760 -12.19028 -12.03562 -11.69614 -11.16036 -10.94157 -10.82429 -10.70877 -10.44523 -10.15185 -10.02564 -9.79392 -9.40441 -8.71761 -8.69480 -7.03591 -5.90326 -3.33066 0.64610 0.89003 1.87951 2.24322 3.05120 3.34861 3.38174 3.40120 4.39443 4.66637 5.33328 5.46733 5.84882 6.13445 6.24074 6.45242 6.68409 7.26121 7.62312 7.70578 7.98591 8.19924 9.03978 9.62454 10.09900 11.13138 Molecular weight = 233.01amu Principal moments of inertia in cm(-1) A = 0.027686 B = 0.009219 C = 0.007687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.088000 B = 3036.461354 C = 3641.874917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.568 5.568 3 C -0.254 4.254 4 H 0.079 0.921 5 C 0.006 3.994 6 N -0.898 5.898 7 Si 0.913 3.087 8 H -0.280 1.280 9 H -0.289 1.289 10 H -0.280 1.280 11 C 0.220 3.780 12 C 0.271 3.729 13 N -0.464 5.464 14 S 0.212 5.788 15 C 0.107 3.893 16 Cl 0.040 6.960 17 N -0.474 5.474 18 H 0.031 0.969 19 H 0.054 0.946 20 H 0.006 0.994 21 H 0.257 0.743 22 H 0.082 0.918 23 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 -8.383 4.009 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.287 5.287 3 C -0.385 4.385 4 H 0.096 0.904 5 C -0.194 4.194 6 N -0.541 5.541 7 Si 0.742 3.258 8 H -0.206 1.206 9 H -0.215 1.215 10 H -0.206 1.206 11 C 0.085 3.915 12 C -0.021 4.021 13 N -0.295 5.295 14 S 0.346 5.654 15 C -0.208 4.208 16 Cl 0.067 6.933 17 N -0.198 5.198 18 H 0.049 0.951 19 H 0.072 0.928 20 H 0.025 0.975 21 H 0.067 0.933 22 H 0.100 0.900 23 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.145 -8.845 4.331 10.685 hybrid contribution 1.152 1.716 0.067 2.068 sum 5.297 -7.129 4.397 9.910 Atomic orbital electron populations 1.20949 0.81358 0.96420 0.99837 1.44469 1.02623 1.00310 1.81344 1.19368 0.98684 0.84409 1.36008 0.90358 1.25186 0.97507 0.99173 0.97534 1.70083 1.17471 1.27860 1.38727 0.86199 0.78696 0.82779 0.78149 1.20595 1.21488 1.20565 1.20149 0.98149 0.89063 0.84133 1.25666 0.83557 0.89361 1.03502 1.77782 1.27249 1.24617 0.99891 1.84739 1.10624 1.47631 1.22401 1.28915 0.96975 1.01093 0.93836 1.98411 1.43424 1.94388 1.57082 1.67068 1.23895 1.23210 1.05578 0.95058 0.92773 0.97523 0.93268 0.90038 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 9.01 59.84 0.54 4.44 14 2 N -0.57 -14.22 2.91 -182.51 -0.53 -14.75 14 3 C -0.25 -6.87 9.67 -15.06 -0.15 -7.01 14 4 H 0.08 2.07 7.84 -52.49 -0.41 1.66 14 5 C 0.01 0.17 5.13 -17.43 -0.09 0.08 14 6 N -0.90 -25.90 10.58 55.49 0.59 -25.31 14 7 Si 0.91 21.66 29.57 -169.99 -5.03 16.63 14 8 H -0.28 -6.48 7.11 56.52 0.40 -6.08 14 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 14 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 14 11 C 0.22 4.62 6.24 -5.19 -0.03 4.59 14 12 C 0.27 5.79 7.15 -159.04 -1.14 4.65 14 13 N -0.46 -9.57 12.16 29.46 0.36 -9.21 14 14 S 0.21 3.61 23.81 -107.50 -2.56 1.05 14 15 C 0.11 1.92 8.50 52.43 0.45 2.37 14 16 Cl 0.04 0.57 29.33 -51.86 -1.52 -0.95 14 17 N -0.47 -10.03 10.57 -12.25 -0.13 -10.16 14 18 H 0.03 0.85 7.42 -51.93 -0.39 0.46 14 19 H 0.05 1.40 7.19 -51.93 -0.37 1.02 14 20 H 0.01 0.13 7.84 -51.93 -0.41 -0.27 14 21 H 0.26 7.19 8.31 -40.82 -0.34 6.85 14 22 H 0.08 1.61 8.03 -51.93 -0.42 1.20 14 23 H 0.07 1.37 7.86 -51.93 -0.41 0.97 14 LS Contribution 240.46 15.07 3.62 3.62 Total: -1.00 -29.72 240.46 -7.15 -36.88 By element: Atomic # 1 Polarization: -5.37 SS G_CDS: -1.54 Total: -6.91 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -0.42 Total: 9.12 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.29 Total: -59.44 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -2.56 Total: 1.05 kcal Atomic # 17 Polarization: 0.57 SS G_CDS: -1.52 Total: -0.95 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.72 -7.15 -36.88 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968109.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.591 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds