Wall clock time and date at job start Mon Mar 30 2020 03:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36938 * 120.00518 * 2 1 4 4 H 1.07997 * 120.00750 * 202.34978 * 3 2 1 5 5 C 1.38817 * 119.99410 * 22.34914 * 3 2 1 6 6 N 1.31620 * 119.99860 * 11.33890 * 5 3 2 7 7 Si 1.86798 * 119.99895 * 191.33571 * 5 3 2 8 8 H 1.48497 * 109.47089 * 60.00063 * 7 5 3 9 9 H 1.48493 * 109.47306 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47104 * 300.00370 * 7 5 3 11 11 C 1.46504 * 119.99940 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.47210 * 270.00220 * 11 2 1 13 13 N 1.30215 * 121.09166 * 90.02416 * 12 11 2 14 14 S 1.69971 * 105.64939 * 179.72847 * 13 12 11 15 15 C 1.72308 * 94.53080 * 359.97438 * 14 13 12 16 16 Cl 1.73600 * 127.48228 * 179.97438 * 15 14 13 17 17 N 1.31045 * 105.02907 * 0.02562 * 15 14 13 18 18 H 1.08992 * 109.47249 * 274.21488 * 1 2 3 19 19 H 1.08997 * 109.46887 * 34.21652 * 1 2 3 20 20 H 1.08997 * 109.46953 * 154.21034 * 1 2 3 21 21 H 0.96999 * 119.99606 * 179.97438 * 6 5 3 22 22 H 1.09001 * 109.47177 * 150.00165 * 11 2 1 23 23 H 1.09003 * 109.47319 * 30.00165 * 11 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5339 2.3429 0.4572 6 7 0.3841 2.2689 1.0936 7 14 2.3369 4.0047 0.1691 8 1 2.4919 4.2333 -1.2899 9 1 1.4853 5.0733 0.7503 10 1 3.6722 4.0284 0.8184 11 6 2.1975 -1.2688 0.0006 12 6 2.4486 -1.7032 1.4216 13 7 1.5952 -2.4550 2.0557 14 16 2.2637 -2.7072 3.5979 15 6 3.6759 -1.7696 3.2891 16 17 4.9955 -1.4587 4.3734 17 7 3.5370 -1.3412 2.0584 18 1 -0.3633 0.0755 1.0248 19 1 -0.3633 0.8498 -0.5779 20 1 -0.3633 -0.9253 -0.4471 21 1 -0.0460 3.0774 1.4134 22 1 3.1499 -1.1387 -0.5133 23 1 1.6084 -2.0287 -0.5130 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685968109.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:13 Heat of formation + Delta-G solvation = 59.341651 kcal Electronic energy + Delta-G solvation = -12219.489649 eV Core-core repulsion = 9835.148568 eV Total energy + Delta-G solvation = -2384.341081 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.008 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.33856 -38.32380 -37.39814 -33.82010 -32.88535 -29.41481 -27.91518 -26.00509 -23.52234 -21.10496 -20.06965 -18.85669 -17.61286 -17.05433 -16.52156 -15.55999 -15.41976 -15.11029 -13.96686 -13.66365 -13.45272 -13.42770 -12.89360 -12.78855 -12.61532 -12.34812 -12.12820 -12.05693 -11.94223 -11.31258 -10.92745 -10.70816 -10.17204 -9.00104 -7.91010 -5.40246 -0.83807 -0.53325 0.41135 0.74651 1.41640 1.46743 1.50506 1.55558 2.48144 3.09379 3.34707 3.66144 4.24743 4.49696 4.66209 4.82396 4.83940 5.27032 5.59184 5.66637 6.22031 6.43906 7.05134 7.70646 8.14090 9.11868 Molecular weight = 233.01amu Principal moments of inertia in cm(-1) A = 0.027686 B = 0.009219 C = 0.007687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.088000 B = 3036.461354 C = 3641.874917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.590 5.590 3 C -0.261 4.261 4 H 0.079 0.921 5 C -0.048 4.048 6 N -0.936 5.936 7 Si 0.971 3.029 8 H -0.271 1.271 9 H -0.295 1.295 10 H -0.278 1.278 11 C 0.220 3.780 12 C 0.265 3.735 13 N -0.489 5.489 14 S 0.289 5.711 15 C 0.100 3.900 16 Cl 0.074 6.926 17 N -0.509 5.509 18 H -0.003 1.003 19 H 0.030 0.970 20 H 0.036 0.964 21 H 0.250 0.750 22 H 0.090 0.910 23 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.333 -9.505 4.710 12.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.311 5.311 3 C -0.391 4.391 4 H 0.096 0.904 5 C -0.243 4.243 6 N -0.581 5.581 7 Si 0.799 3.201 8 H -0.196 1.196 9 H -0.221 1.221 10 H -0.204 1.204 11 C 0.087 3.913 12 C -0.027 4.027 13 N -0.320 5.320 14 S 0.424 5.576 15 C -0.213 4.213 16 Cl 0.102 6.898 17 N -0.234 5.234 18 H 0.015 0.985 19 H 0.049 0.951 20 H 0.055 0.945 21 H 0.059 0.941 22 H 0.108 0.892 23 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.315 -9.995 5.040 12.391 hybrid contribution 0.921 1.762 0.040 1.989 sum 6.236 -8.233 5.080 11.509 Atomic orbital electron populations 1.20628 0.81745 0.96815 0.97536 1.44423 1.02595 1.01075 1.82991 1.19570 0.98535 0.85628 1.35414 0.90369 1.25874 0.98220 1.02173 0.98056 1.70250 1.19076 1.27844 1.40974 0.85281 0.77512 0.79036 0.78281 1.19638 1.22091 1.20412 1.20146 0.98647 0.88168 0.84347 1.25401 0.83978 0.90097 1.03230 1.77562 1.27522 1.24571 1.02381 1.84454 1.08851 1.45461 1.18794 1.29298 0.98232 1.00130 0.93677 1.98429 1.41784 1.94086 1.55509 1.67092 1.24449 1.24742 1.07090 0.98461 0.95122 0.94510 0.94118 0.89164 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.82 9.01 127.77 1.15 9.97 14 2 N -0.59 -29.47 2.91 -731.32 -2.13 -31.60 14 3 C -0.26 -14.19 9.67 84.03 0.81 -13.37 14 4 H 0.08 4.13 7.84 -2.91 -0.02 4.11 14 5 C -0.05 -2.65 5.13 84.86 0.44 -2.22 14 6 N -0.94 -55.39 10.58 21.65 0.23 -55.16 14 7 Si 0.97 45.05 29.57 68.60 2.03 47.08 14 8 H -0.27 -12.00 7.11 99.48 0.71 -11.29 14 9 H -0.29 -13.77 7.11 99.48 0.71 -13.06 14 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 14 11 C 0.22 8.99 6.24 85.63 0.53 9.53 14 12 C 0.27 10.95 7.15 139.39 1.00 11.94 14 13 N -0.49 -19.18 12.16 -60.71 -0.74 -19.92 14 14 S 0.29 9.03 23.81 -56.49 -1.35 7.69 14 15 C 0.10 3.35 8.50 130.36 1.11 4.46 14 16 Cl 0.07 1.94 29.33 -2.72 -0.08 1.86 14 17 N -0.51 -20.69 10.57 -192.67 -2.04 -22.72 14 18 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 14 19 H 0.03 1.61 7.19 -2.39 -0.02 1.60 14 20 H 0.04 1.55 7.84 -2.39 -0.02 1.53 14 21 H 0.25 14.42 8.31 -92.71 -0.77 13.65 14 22 H 0.09 3.47 8.03 -2.39 -0.02 3.45 14 23 H 0.10 3.44 7.86 -2.39 -0.02 3.42 14 Total: -1.00 -63.41 240.46 2.21 -61.21 By element: Atomic # 1 Polarization: -9.98 SS G_CDS: 1.24 Total: -8.75 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 5.04 Total: 20.31 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -4.67 Total: -129.40 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 9.03 SS G_CDS: -1.35 Total: 7.69 kcal Atomic # 17 Polarization: 1.94 SS G_CDS: -0.08 Total: 1.86 kcal Total: -63.41 2.21 -61.21 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968109.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.547 kcal (2) G-P(sol) polarization free energy of solvation -63.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds