Wall clock time and date at job start Mon Mar 30 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47437 * 2 1 4 4 C 1.50700 * 109.47133 * 239.99681 * 2 1 3 5 5 H 1.07994 * 120.00416 * 244.29824 * 4 2 1 6 6 C 1.37887 * 119.99784 * 64.29310 * 4 2 1 7 7 N 1.31509 * 119.99753 * 8.41152 * 6 4 2 8 8 Si 1.86796 * 119.99879 * 188.40473 * 6 4 2 9 9 H 1.48500 * 109.47187 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47038 * 120.00507 * 8 6 4 11 11 H 1.48498 * 109.47035 * 239.99990 * 8 6 4 12 12 N 1.46895 * 109.46960 * 120.00267 * 2 1 3 13 13 C 1.48048 * 110.99893 * 296.50159 * 12 2 1 14 14 C 1.51212 * 105.67795 * 212.99681 * 13 12 2 15 15 C 1.38261 * 131.68379 * 197.52758 * 14 13 12 16 16 C 1.38074 * 120.12925 * 179.97438 * 15 14 13 17 17 C 1.38933 * 119.92836 * 0.02562 * 16 15 14 18 18 N 1.39672 * 120.07789 * 180.02562 * 17 16 15 19 19 C 1.38887 * 119.84030 * 359.97438 * 17 16 15 20 20 C 1.38054 * 119.97749 * 0.02562 * 19 17 16 21 21 C 1.48053 * 111.00154 * 181.48813 * 12 2 1 22 22 H 1.08993 * 109.47180 * 183.33942 * 1 2 3 23 23 H 1.09003 * 109.46804 * 303.34446 * 1 2 3 24 24 H 1.08997 * 109.46624 * 63.33484 * 1 2 3 25 25 H 0.97006 * 120.00598 * 3.83702 * 7 6 4 26 26 H 1.09006 * 110.20718 * 332.04075 * 13 12 2 27 27 H 1.08993 * 110.21061 * 93.94397 * 13 12 2 28 28 H 1.08000 * 119.93243 * 359.97438 * 15 14 13 29 29 H 1.08001 * 120.03439 * 180.02562 * 16 15 14 30 30 H 0.97000 * 119.99947 * 0.02562 * 18 17 16 31 31 H 0.97005 * 119.99920 * 180.02562 * 18 17 16 32 32 H 1.08001 * 120.01095 * 180.02562 * 19 17 16 33 33 H 1.08999 * 110.20298 * 266.05248 * 21 12 2 34 34 H 1.09002 * 110.20719 * 27.86629 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5948 -1.6272 -1.1329 6 6 1.7738 -0.1900 -2.4808 7 7 1.2364 1.0046 -2.5976 8 14 2.1870 -1.1818 -4.0089 9 1 2.7779 -2.4841 -3.6090 10 1 0.9492 -1.4204 -4.7938 11 1 3.1619 -0.4293 -4.8387 12 7 2.0196 -0.6925 1.1994 13 6 1.6150 0.0257 2.4291 14 6 2.7363 -0.1954 3.4192 15 6 2.7918 -0.0500 4.7930 16 6 3.9626 -0.3233 5.4721 17 6 5.0870 -0.7446 4.7733 18 7 6.2728 -1.0224 5.4572 19 6 5.0289 -0.8899 3.3933 20 6 3.8556 -0.6153 2.7196 21 6 3.4992 -0.6813 1.2517 22 1 -0.3633 -1.0259 0.0599 23 1 -0.3633 0.5649 0.8585 24 1 -0.3632 0.4612 -0.9184 25 1 1.0732 1.5424 -1.8069 26 1 1.4994 1.0898 2.2228 27 1 0.6836 -0.3867 2.8168 28 1 1.9177 0.2780 5.3360 29 1 4.0041 -0.2096 6.5453 30 1 6.3117 -0.9216 6.4211 31 1 7.0573 -1.3162 4.9681 32 1 5.9012 -1.2177 2.8474 33 1 3.8985 -1.5933 0.8079 34 1 3.8878 0.1927 0.7290 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689440151.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:22 Heat of formation + Delta-G solvation = 33.429371 kcal Electronic energy + Delta-G solvation = -15918.639549 eV Core-core repulsion = 13429.946906 eV Total energy + Delta-G solvation = -2488.692643 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.93394 -37.28476 -34.52810 -32.85679 -31.07676 -29.67711 -27.85255 -26.38712 -24.69613 -23.13610 -21.13441 -20.64710 -19.84938 -16.94569 -16.71386 -16.43812 -15.23089 -14.93810 -14.36086 -13.70153 -13.61187 -13.33692 -13.10750 -12.75404 -12.50437 -12.20726 -11.80600 -11.20024 -11.05306 -10.88564 -10.59605 -10.52524 -10.47153 -10.24356 -10.09415 -10.02454 -8.58753 -8.49349 -8.34352 -7.59450 -7.13187 -6.34458 -4.04917 1.65718 1.81620 3.46132 3.49170 3.63926 3.85917 4.07263 4.52673 4.86365 4.97395 5.13124 5.23442 5.37741 5.57755 5.77038 5.85201 6.05524 6.21012 6.24598 6.28600 6.45105 6.52563 6.55164 6.64136 6.76262 6.81190 7.04387 7.06169 7.08849 7.36756 7.56737 7.75491 7.75987 8.00275 8.30273 8.59478 8.87170 9.65127 11.02214 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.041493 B = 0.006175 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.646906 B = 4533.013350 C = 5054.420144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.190 3.810 3 H -0.006 1.006 4 C -0.586 4.586 5 H 0.057 0.943 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 1.072 2.928 9 H -0.289 1.289 10 H -0.286 1.286 11 H -0.289 1.289 12 N -0.492 5.492 13 C 0.080 3.920 14 C -0.154 4.154 15 C -0.058 4.058 16 C -0.204 4.204 17 C 0.209 3.791 18 N -0.883 5.883 19 C -0.181 4.181 20 C -0.046 4.046 21 C 0.090 3.910 22 H 0.047 0.953 23 H 0.016 0.984 24 H 0.062 0.938 25 H 0.270 0.730 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.395 0.605 31 H 0.396 0.604 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.666 -2.228 14.183 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.083 3.917 3 H 0.012 0.988 4 C -0.624 4.624 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.549 5.549 8 Si 0.901 3.099 9 H -0.214 1.214 10 H -0.213 1.213 11 H -0.216 1.216 12 N -0.216 5.216 13 C -0.048 4.048 14 C -0.156 4.156 15 C -0.077 4.077 16 C -0.227 4.227 17 C 0.106 3.894 18 N -0.423 5.423 19 C -0.204 4.204 20 C -0.048 4.048 21 C -0.038 4.038 22 H 0.066 0.934 23 H 0.035 0.965 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.222 0.778 31 H 0.223 0.777 32 H 0.135 0.865 33 H 0.102 0.898 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.280 -2.750 12.434 14.198 hybrid contribution 0.728 0.780 1.926 2.202 sum 7.008 -1.971 14.359 16.099 Atomic orbital electron populations 1.21848 0.97935 1.00229 0.99396 1.19654 0.92206 0.92048 0.87758 0.98846 1.21917 1.38368 1.11082 0.91054 0.92444 1.25767 0.94376 0.96970 1.01211 1.70737 1.41111 1.09431 1.33659 0.83507 0.76518 0.74908 0.74973 1.21442 1.21275 1.21603 1.65329 1.05930 1.48501 1.01812 1.21546 0.96096 0.97010 0.90168 1.20579 0.96889 1.04415 0.93734 1.20166 0.97019 0.97940 0.92551 1.20348 0.92884 1.10516 0.98968 1.17564 0.86700 0.94008 0.91120 1.42359 1.11509 1.78844 1.09547 1.19824 0.98401 1.10300 0.91893 1.20703 0.92811 0.94424 0.96813 1.21441 0.90620 1.02050 0.89643 0.93421 0.96469 0.91924 0.91903 0.93550 0.90606 0.86485 0.86533 0.77772 0.77677 0.86500 0.89799 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.79 37.16 0.33 -2.94 16 2 C 0.19 4.85 1.27 -68.87 -0.09 4.76 16 3 H -0.01 -0.16 7.26 -51.93 -0.38 -0.54 16 4 C -0.59 -16.33 8.00 -34.44 -0.28 -16.61 16 5 H 0.06 1.63 7.49 -52.49 -0.39 1.24 16 6 C 0.02 0.59 5.19 -17.82 -0.09 0.49 16 7 N -0.91 -27.09 12.83 55.43 0.71 -26.38 16 8 Si 1.07 25.22 29.91 -169.99 -5.08 20.14 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.49 -11.16 5.29 -228.30 -1.21 -12.37 16 13 C 0.08 1.56 5.45 -4.09 -0.02 1.54 16 14 C -0.15 -2.74 6.26 -104.26 -0.65 -3.39 16 15 C -0.06 -0.86 10.03 -39.63 -0.40 -1.26 16 16 C -0.20 -2.73 9.90 -39.38 -0.39 -3.12 16 17 C 0.21 2.81 6.75 -83.79 -0.57 2.25 16 18 N -0.88 -8.35 9.09 32.41 0.29 -8.06 16 19 C -0.18 -2.81 9.89 -39.41 -0.39 -3.20 16 20 C -0.05 -0.84 6.26 -104.35 -0.65 -1.50 16 21 C 0.09 1.89 5.69 -4.10 -0.02 1.87 16 22 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 23 H 0.02 0.35 7.41 -51.93 -0.38 -0.03 16 24 H 0.06 1.61 6.32 -51.93 -0.33 1.29 16 25 H 0.27 8.00 6.22 -40.82 -0.25 7.74 16 26 H 0.05 0.92 7.71 -51.93 -0.40 0.52 16 27 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 30 H 0.39 2.86 8.84 -40.82 -0.36 2.50 16 31 H 0.40 3.11 8.84 -40.82 -0.36 2.75 16 32 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 33 H 0.08 1.76 8.00 -51.93 -0.42 1.35 16 34 H 0.06 1.35 7.75 -51.93 -0.40 0.95 16 LS Contribution 278.21 15.07 4.19 4.19 Total: -1.00 -30.81 278.21 -8.90 -39.72 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.59 Total: 3.86 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -3.22 Total: -21.10 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.20 Total: -46.81 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.14 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.81 -8.90 -39.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689440151.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.146 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds