Wall clock time and date at job start Mon Mar 30 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47437 * 2 1 4 4 C 1.50700 * 109.47133 * 239.99681 * 2 1 3 5 5 H 1.07994 * 120.00416 * 244.29824 * 4 2 1 6 6 C 1.37887 * 119.99784 * 64.29310 * 4 2 1 7 7 N 1.31509 * 119.99753 * 8.41152 * 6 4 2 8 8 Si 1.86796 * 119.99879 * 188.40473 * 6 4 2 9 9 H 1.48500 * 109.47187 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47038 * 120.00507 * 8 6 4 11 11 H 1.48498 * 109.47035 * 239.99990 * 8 6 4 12 12 N 1.46895 * 109.46960 * 120.00267 * 2 1 3 13 13 C 1.48048 * 110.99893 * 296.50159 * 12 2 1 14 14 C 1.51212 * 105.67795 * 212.99681 * 13 12 2 15 15 C 1.38261 * 131.68379 * 197.52758 * 14 13 12 16 16 C 1.38074 * 120.12925 * 179.97438 * 15 14 13 17 17 C 1.38933 * 119.92836 * 0.02562 * 16 15 14 18 18 N 1.39672 * 120.07789 * 180.02562 * 17 16 15 19 19 C 1.38887 * 119.84030 * 359.97438 * 17 16 15 20 20 C 1.38054 * 119.97749 * 0.02562 * 19 17 16 21 21 C 1.48053 * 111.00154 * 181.48813 * 12 2 1 22 22 H 1.08993 * 109.47180 * 183.33942 * 1 2 3 23 23 H 1.09003 * 109.46804 * 303.34446 * 1 2 3 24 24 H 1.08997 * 109.46624 * 63.33484 * 1 2 3 25 25 H 0.97006 * 120.00598 * 3.83702 * 7 6 4 26 26 H 1.09006 * 110.20718 * 332.04075 * 13 12 2 27 27 H 1.08993 * 110.21061 * 93.94397 * 13 12 2 28 28 H 1.08000 * 119.93243 * 359.97438 * 15 14 13 29 29 H 1.08001 * 120.03439 * 180.02562 * 16 15 14 30 30 H 0.97000 * 119.99947 * 0.02562 * 18 17 16 31 31 H 0.97005 * 119.99920 * 180.02562 * 18 17 16 32 32 H 1.08001 * 120.01095 * 180.02562 * 19 17 16 33 33 H 1.08999 * 110.20298 * 266.05248 * 21 12 2 34 34 H 1.09002 * 110.20719 * 27.86629 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5948 -1.6272 -1.1329 6 6 1.7738 -0.1900 -2.4808 7 7 1.2364 1.0046 -2.5976 8 14 2.1870 -1.1818 -4.0089 9 1 2.7779 -2.4841 -3.6090 10 1 0.9492 -1.4204 -4.7938 11 1 3.1619 -0.4293 -4.8387 12 7 2.0196 -0.6925 1.1994 13 6 1.6150 0.0257 2.4291 14 6 2.7363 -0.1954 3.4192 15 6 2.7918 -0.0500 4.7930 16 6 3.9626 -0.3233 5.4721 17 6 5.0870 -0.7446 4.7733 18 7 6.2728 -1.0224 5.4572 19 6 5.0289 -0.8899 3.3933 20 6 3.8556 -0.6153 2.7196 21 6 3.4992 -0.6813 1.2517 22 1 -0.3633 -1.0259 0.0599 23 1 -0.3633 0.5649 0.8585 24 1 -0.3632 0.4612 -0.9184 25 1 1.0732 1.5424 -1.8069 26 1 1.4994 1.0898 2.2228 27 1 0.6836 -0.3867 2.8168 28 1 1.9177 0.2780 5.3360 29 1 4.0041 -0.2096 6.5453 30 1 6.3117 -0.9216 6.4211 31 1 7.0573 -1.3162 4.9681 32 1 5.9012 -1.2177 2.8474 33 1 3.8985 -1.5933 0.8079 34 1 3.8878 0.1927 0.7290 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689440151.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:22 Heat of formation + Delta-G solvation = 11.969653 kcal Electronic energy + Delta-G solvation = -15919.570113 eV Core-core repulsion = 13429.946906 eV Total energy + Delta-G solvation = -2489.623206 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.29478 -38.74533 -36.13543 -34.39948 -32.54606 -31.23813 -29.41163 -27.87427 -26.72564 -24.66085 -22.57791 -21.94073 -21.66356 -18.90795 -17.89374 -17.52046 -16.60557 -16.50277 -16.04945 -15.58965 -15.08486 -14.71688 -14.46972 -14.20526 -13.88713 -13.76320 -13.58586 -13.12401 -12.82982 -12.62294 -12.40047 -12.26378 -12.20296 -11.92490 -11.65327 -11.29902 -10.59944 -10.50645 -9.80585 -9.28532 -8.61678 -8.29750 -6.32381 0.46156 0.62152 1.54017 1.62383 1.80197 2.56336 2.87544 2.94715 3.15956 3.28960 3.62040 3.72843 4.14028 4.41042 4.41704 4.44032 4.55784 4.56782 4.68634 4.73356 4.80270 4.86533 4.99784 5.05358 5.10928 5.36390 5.38331 5.47963 5.72520 5.87787 5.92485 6.00161 6.24120 6.43809 6.60732 6.65517 7.05297 7.45561 8.75261 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.041493 B = 0.006175 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.646906 B = 4533.013350 C = 5054.420144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.194 3.806 3 H -0.038 1.038 4 C -0.596 4.596 5 H 0.047 0.953 6 C -0.026 4.026 7 N -0.933 5.933 8 Si 1.119 2.881 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.281 1.281 12 N -0.504 5.504 13 C 0.082 3.918 14 C -0.180 4.180 15 C -0.053 4.053 16 C -0.198 4.198 17 C 0.219 3.781 18 N -0.864 5.864 19 C -0.192 4.192 20 C -0.069 4.069 21 C 0.094 3.906 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.258 0.742 26 H 0.035 0.965 27 H 0.086 0.914 28 H 0.143 0.857 29 H 0.154 0.846 30 H 0.410 0.590 31 H 0.406 0.594 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.667 -3.079 16.504 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 H -0.020 1.020 4 C -0.634 4.634 5 H 0.065 0.935 6 C -0.224 4.224 7 N -0.570 5.570 8 Si 0.941 3.059 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.207 1.207 12 N -0.228 5.228 13 C -0.045 4.045 14 C -0.183 4.183 15 C -0.072 4.072 16 C -0.221 4.221 17 C 0.113 3.887 18 N -0.405 5.405 19 C -0.215 4.215 20 C -0.070 4.070 21 C -0.034 4.034 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.160 0.840 29 H 0.171 0.829 30 H 0.241 0.759 31 H 0.235 0.765 32 H 0.146 0.854 33 H 0.091 0.909 34 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.316 -3.609 14.808 16.907 hybrid contribution 0.518 1.040 1.376 1.801 sum 7.834 -2.569 16.185 18.163 Atomic orbital electron populations 1.21668 0.96809 1.00278 0.99373 1.19489 0.93020 0.90260 0.88612 1.02019 1.22160 1.38190 1.10660 0.92395 0.93504 1.27163 0.93670 0.97127 1.04438 1.70852 1.42812 1.10305 1.33038 0.82908 0.76892 0.74200 0.71904 1.20001 1.20311 1.20674 1.65215 1.07073 1.48507 1.01994 1.21497 0.97541 0.96018 0.89479 1.20500 0.95781 1.07032 0.94939 1.20469 0.98700 0.96853 0.91182 1.20767 0.91880 1.08708 1.00717 1.17649 0.88090 0.92532 0.90407 1.42335 1.10481 1.77216 1.10420 1.19969 0.97802 1.10622 0.93146 1.20485 0.94572 0.97124 0.94820 1.21265 0.89668 1.00274 0.92158 0.93454 0.93974 0.94051 0.93212 0.94663 0.89612 0.83955 0.82864 0.75949 0.76505 0.85405 0.90914 0.94823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.79 71.98 0.63 -5.45 16 2 C 0.19 10.33 1.27 44.17 0.06 10.38 16 3 H -0.04 -2.20 7.26 -2.39 -0.02 -2.21 16 4 C -0.60 -34.40 8.00 25.60 0.20 -34.20 16 5 H 0.05 2.74 7.49 -2.91 -0.02 2.72 16 6 C -0.03 -1.47 5.19 84.66 0.44 -1.03 16 7 N -0.93 -56.94 12.83 21.45 0.28 -56.67 16 8 Si 1.12 51.20 29.91 68.60 2.05 53.25 16 9 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 N -0.50 -23.74 5.29 -876.21 -4.63 -28.37 16 13 C 0.08 3.27 5.45 85.50 0.47 3.74 16 14 C -0.18 -6.30 6.26 -19.63 -0.12 -6.43 16 15 C -0.05 -1.43 10.03 22.24 0.22 -1.21 16 16 C -0.20 -4.46 9.90 22.40 0.22 -4.24 16 17 C 0.22 5.15 6.75 38.21 0.26 5.41 16 18 N -0.86 -12.72 9.09 -51.37 -0.47 -13.19 16 19 C -0.19 -5.68 9.89 22.38 0.22 -5.46 16 20 C -0.07 -2.52 6.26 -19.69 -0.12 -2.64 16 21 C 0.09 4.16 5.69 85.49 0.49 4.65 16 22 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.04 1.81 7.41 -2.39 -0.02 1.79 16 24 H 0.04 2.19 6.32 -2.39 -0.02 2.17 16 25 H 0.26 15.98 6.22 -92.70 -0.58 15.40 16 26 H 0.04 1.45 7.71 -2.38 -0.02 1.43 16 27 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 29 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 30 H 0.41 3.92 8.84 -92.71 -0.82 3.10 16 31 H 0.41 4.83 8.84 -92.70 -0.82 4.01 16 32 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.07 3.24 8.00 -2.39 -0.02 3.22 16 34 H 0.03 1.62 7.75 -2.39 -0.02 1.60 16 Total: -1.00 -68.41 278.21 -0.14 -68.55 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -0.33 Total: 12.91 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: 2.96 Total: -36.48 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -4.83 Total: -98.23 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.05 Total: 53.25 kcal Total: -68.41 -0.14 -68.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689440151.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.520 kcal (2) G-P(sol) polarization free energy of solvation -68.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds