Wall clock time and date at job start Mon Mar 30 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 5 5 H 1.08003 * 119.99963 * 119.99543 * 4 2 1 6 6 C 1.37874 * 120.00270 * 299.99763 * 4 2 1 7 7 N 1.31513 * 120.00302 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 119.99832 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47310 * 89.99428 * 8 6 4 10 10 H 1.48491 * 109.47296 * 209.99911 * 8 6 4 11 11 H 1.48502 * 109.46905 * 329.99956 * 8 6 4 12 12 N 1.46906 * 109.46907 * 240.00230 * 2 1 3 13 13 C 1.48043 * 110.99679 * 175.01844 * 12 2 1 14 14 C 1.51212 * 105.67308 * 212.99229 * 13 12 2 15 15 C 1.38262 * 131.67916 * 197.52616 * 14 13 12 16 16 C 1.38078 * 120.12723 * 179.97438 * 15 14 13 17 17 C 1.38929 * 119.92415 * 0.02562 * 16 15 14 18 18 N 1.39676 * 120.07558 * 179.97438 * 17 16 15 19 19 C 1.38895 * 119.84730 * 0.02562 * 17 16 15 20 20 C 1.38058 * 119.97097 * 359.93557 * 19 17 16 21 21 C 1.48042 * 111.00121 * 60.00040 * 12 2 1 22 22 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 25 25 H 0.97002 * 119.99998 * 179.97438 * 7 6 4 26 26 H 1.08999 * 110.20872 * 332.04002 * 13 12 2 27 27 H 1.08999 * 110.21131 * 93.94330 * 13 12 2 28 28 H 1.07994 * 119.93647 * 0.02562 * 15 14 13 29 29 H 1.08001 * 120.03519 * 180.02562 * 16 15 14 30 30 H 0.96999 * 120.00041 * 0.02562 * 18 17 16 31 31 H 0.97004 * 119.99902 * 179.97438 * 18 17 16 32 32 H 1.07994 * 120.01404 * 180.02562 * 19 17 16 33 33 H 1.08998 * 110.20967 * 266.05305 * 21 12 2 34 34 H 1.08995 * 110.20828 * 27.86702 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8726 2.6998 10 1 0.9760 1.9949 3.9068 11 1 0.8471 2.1764 1.4921 12 7 2.0196 -0.6925 -1.1995 13 6 3.4946 -0.6091 -1.2952 14 6 3.8057 -0.5566 -2.7741 15 6 4.9740 -0.7871 -3.4766 16 6 4.9900 -0.6703 -4.8523 17 6 3.8299 -0.3199 -5.5316 18 7 3.8426 -0.2004 -6.9232 19 6 2.6576 -0.0878 -4.8237 20 6 2.6475 -0.2069 -3.4483 21 6 1.5449 -0.0211 -2.4306 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8901 25 1 1.9033 -0.5282 4.4375 26 1 3.8534 0.2946 -0.8027 27 1 3.9515 -1.4906 -0.8455 28 1 5.8756 -1.0598 -2.9483 29 1 5.9034 -0.8510 -5.3996 30 1 4.6620 -0.3623 -7.4164 31 1 3.0318 0.0439 -7.3964 32 1 1.7542 0.1842 -5.3491 33 1 0.6248 -0.4873 -2.7829 34 1 1.3804 1.0396 -2.2415 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689440153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:24 Heat of formation + Delta-G solvation = 23.140213 kcal Electronic energy + Delta-G solvation = -15929.174316 eV Core-core repulsion = 13440.035501 eV Total energy + Delta-G solvation = -2489.138815 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.25732 -38.69907 -35.87287 -34.38602 -32.75521 -31.82017 -29.17002 -28.37287 -26.66772 -24.67877 -22.51662 -21.85763 -21.33154 -18.88177 -17.89665 -17.51742 -16.86074 -16.54037 -16.16470 -15.59634 -14.96402 -14.65906 -14.55136 -14.35290 -14.11055 -13.80683 -13.71464 -13.42062 -12.89339 -12.52036 -12.48416 -12.19693 -12.17062 -11.61811 -11.44257 -11.30552 -11.08301 -10.74077 -9.76488 -9.21418 -8.29478 -8.24869 -6.33370 0.50690 0.66616 1.29814 1.34906 1.45132 2.31037 2.91999 2.99353 3.03369 3.26195 3.65784 3.78727 4.18901 4.42253 4.45242 4.46673 4.57933 4.62072 4.67801 4.70703 4.73748 4.92832 4.96791 5.05070 5.12445 5.36759 5.40814 5.51564 5.61950 5.78877 5.95593 5.98895 6.15631 6.59164 6.65344 6.71994 7.08966 7.31264 8.87572 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.051178 B = 0.006164 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.980370 B = 4541.435471 C = 4894.749012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.176 3.824 3 H -0.006 1.006 4 C -0.509 4.509 5 H 0.036 0.964 6 C 0.014 3.986 7 N -0.947 5.947 8 Si 0.950 3.050 9 H -0.261 1.261 10 H -0.296 1.296 11 H -0.252 1.252 12 N -0.506 5.506 13 C 0.100 3.900 14 C -0.182 4.182 15 C -0.060 4.060 16 C -0.199 4.199 17 C 0.217 3.783 18 N -0.864 5.864 19 C -0.185 4.185 20 C -0.064 4.064 21 C 0.072 3.928 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.038 0.962 25 H 0.267 0.733 26 H 0.036 0.964 27 H 0.060 0.940 28 H 0.131 0.869 29 H 0.148 0.852 30 H 0.409 0.591 31 H 0.407 0.593 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 4.399 -20.998 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.068 3.932 3 H 0.012 0.988 4 C -0.547 4.547 5 H 0.054 0.946 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.777 3.223 9 H -0.187 1.187 10 H -0.224 1.224 11 H -0.177 1.177 12 N -0.229 5.229 13 C -0.028 4.028 14 C -0.184 4.184 15 C -0.079 4.079 16 C -0.222 4.222 17 C 0.111 3.889 18 N -0.405 5.405 19 C -0.209 4.209 20 C -0.065 4.065 21 C -0.056 4.056 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.149 0.851 29 H 0.166 0.834 30 H 0.239 0.761 31 H 0.236 0.764 32 H 0.156 0.844 33 H 0.114 0.886 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.446 3.836 -20.729 21.131 hybrid contribution 0.003 1.138 0.680 1.326 sum 1.449 4.974 -20.049 20.708 Atomic orbital electron populations 1.22073 0.96188 1.01711 0.99913 1.19804 0.93312 0.91561 0.88510 0.98808 1.21111 1.31174 1.12411 0.90048 0.94586 1.25777 0.97351 1.00033 0.95185 1.70033 1.47663 1.42452 0.98573 0.85834 0.79441 0.79789 0.77247 1.18664 1.22377 1.17661 1.65133 1.06028 1.50154 1.01632 1.21161 0.89524 0.99724 0.92377 1.20534 0.95696 1.07379 0.94831 1.20435 0.96462 0.97060 0.93967 1.20705 0.98320 1.09688 0.93462 1.17659 0.92961 0.92819 0.85438 1.42330 1.16240 1.79710 1.02212 1.19982 0.98535 1.10612 0.91722 1.20442 0.95131 0.97002 0.93952 1.21699 0.97341 0.97732 0.88805 0.91581 0.92455 0.94331 0.92413 0.94631 0.92210 0.85143 0.83391 0.76134 0.76364 0.84371 0.88567 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.07 8.57 71.98 0.62 -5.45 16 2 C 0.18 8.62 1.24 44.17 0.05 8.67 16 3 H -0.01 -0.27 6.97 -2.39 -0.02 -0.29 16 4 C -0.51 -30.05 8.75 25.60 0.22 -29.83 16 5 H 0.04 2.39 7.80 -2.91 -0.02 2.36 16 6 C 0.01 0.82 5.45 84.65 0.46 1.28 16 7 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 8 Si 0.95 45.39 24.37 68.60 1.67 47.06 16 9 H -0.26 -11.71 6.87 99.48 0.68 -11.03 16 10 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 11 H -0.25 -11.28 6.53 99.48 0.65 -10.63 16 12 N -0.51 -22.50 5.29 -876.27 -4.63 -27.13 16 13 C 0.10 4.31 5.81 85.50 0.50 4.80 16 14 C -0.18 -6.43 6.26 -19.63 -0.12 -6.55 16 15 C -0.06 -1.73 10.03 22.24 0.22 -1.51 16 16 C -0.20 -4.57 9.90 22.40 0.22 -4.35 16 17 C 0.22 4.74 6.75 38.21 0.26 4.99 16 18 N -0.86 -11.31 9.09 -51.37 -0.47 -11.77 16 19 C -0.19 -4.74 9.89 22.38 0.22 -4.52 16 20 C -0.06 -2.09 6.26 -19.69 -0.12 -2.22 16 21 C 0.07 2.54 5.29 85.49 0.45 2.99 16 22 H 0.07 2.33 7.09 -2.39 -0.02 2.31 16 23 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.04 1.67 3.27 -2.39 -0.01 1.67 16 25 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 26 H 0.04 1.62 7.69 -2.39 -0.02 1.60 16 27 H 0.06 2.75 8.06 -2.39 -0.02 2.73 16 28 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.41 3.57 8.84 -92.71 -0.82 2.75 16 31 H 0.41 3.86 8.84 -92.71 -0.82 3.04 16 32 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 33 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.06 1.95 7.62 -2.39 -0.02 1.94 16 Total: -1.00 -70.40 272.37 -0.74 -71.14 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -0.60 Total: 12.19 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 2.98 Total: -31.67 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -4.80 Total: -98.72 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.67 Total: 47.06 kcal Total: -70.40 -0.74 -71.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689440153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.285 kcal (2) G-P(sol) polarization free energy of solvation -70.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds