Wall clock time and date at job start Mon Mar 30 2020 03:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99647 * 2 1 4 4 H 1.48495 * 109.47197 * 239.99848 * 3 2 1 5 5 H 1.48502 * 109.47361 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46765 * 120.00431 * 3 2 1 7 7 C 1.37879 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99873 * 173.56065 * 7 2 1 9 9 C 1.50692 * 119.99934 * 353.56337 * 7 2 1 10 10 C 1.53004 * 115.55352 * 85.40862 * 9 7 2 11 11 N 1.46502 * 109.46739 * 65.12262 * 10 9 7 12 12 C 1.34781 * 119.99760 * 178.21609 * 11 10 9 13 13 O 1.21505 * 119.99882 * 0.27519 * 12 11 10 14 14 O 1.34631 * 119.99927 * 180.28257 * 12 11 10 15 15 C 1.45198 * 117.00114 * 180.02562 * 14 12 11 16 16 Cl 1.80295 * 109.47363 * 74.99462 * 15 14 12 17 17 C 1.53008 * 117.50068 * 231.07911 * 9 7 2 18 18 C 1.53002 * 117.49936 * 299.73732 * 9 7 2 19 19 H 0.97003 * 120.00760 * 5.06087 * 1 2 3 20 20 H 1.08999 * 109.47098 * 305.12825 * 10 9 7 21 21 H 1.08996 * 109.47594 * 185.12460 * 10 9 7 22 22 H 0.96998 * 120.00409 * 358.49546 * 11 10 9 23 23 H 1.09004 * 109.47242 * 194.99760 * 15 14 12 24 24 H 1.09002 * 109.46943 * 314.99417 * 15 14 12 25 25 H 1.08996 * 117.50090 * 215.00296 * 17 9 7 26 26 H 1.08999 * 117.49010 * 0.02562 * 17 9 7 27 27 H 1.08996 * 117.49775 * 359.97438 * 18 9 7 28 28 H 1.09005 * 117.49534 * 144.97434 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1969 -0.1054 9 6 1.2582 -2.4950 0.1452 10 6 0.7024 -3.0859 -1.1521 11 7 1.8116 -3.4578 -2.0339 12 6 1.5607 -4.0352 -3.2256 13 8 0.4144 -4.2428 -3.5707 14 8 2.5803 -4.3821 -4.0335 15 6 2.2358 -4.9990 -5.3019 16 17 1.6109 -3.7408 -6.4321 17 6 1.7469 -3.4739 1.2148 18 6 0.4416 -2.7018 1.4224 19 1 -0.4851 0.8367 -0.0741 20 1 0.0755 -2.3456 -1.6492 21 1 0.1080 -3.9704 -0.9231 22 1 2.7268 -3.2921 -1.7583 23 1 3.1222 -5.4655 -5.7318 24 1 1.4684 -5.7563 -5.1411 25 1 1.6725 -4.5388 0.9943 26 1 2.6080 -3.1766 1.8133 27 1 0.4445 -1.8970 2.1574 28 1 -0.4919 -3.2584 1.3383 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692901246.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:21 Heat of formation + Delta-G solvation = -69.495521 kcal Electronic energy + Delta-G solvation = -14413.715026 eV Core-core repulsion = 11684.574618 eV Total energy + Delta-G solvation = -2729.140408 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.061 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.06176 -37.28943 -36.20480 -35.55186 -33.53839 -32.00863 -27.67690 -26.00019 -25.06191 -21.36942 -20.84804 -19.57426 -18.20693 -16.83016 -16.42453 -16.06578 -14.73744 -14.37679 -14.33661 -14.05802 -13.46095 -12.95907 -12.57849 -12.05566 -11.65005 -11.04437 -10.99220 -10.95288 -10.88954 -10.57077 -10.47703 -10.33587 -10.16450 -9.65092 -9.05715 -8.54336 -8.45379 -8.21869 -6.11146 -4.20368 2.00419 2.44699 3.27021 3.32489 3.32889 3.34449 4.33585 4.59669 4.73748 4.93766 5.16744 5.28915 5.91519 6.22466 6.27799 6.38937 6.44857 6.63999 6.79818 7.03204 7.08314 7.33921 7.41074 7.78636 8.07377 8.28199 8.78314 8.81645 9.47264 10.96655 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.026895 B = 0.007228 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.837459 B = 3872.961533 C = 4485.821926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.075 3.925 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.504 4.504 8 H 0.061 0.939 9 C 0.025 3.975 10 C 0.179 3.821 11 N -0.676 5.676 12 C 0.634 3.366 13 O -0.571 6.571 14 O -0.363 6.363 15 C 0.163 3.837 16 Cl -0.179 7.179 17 C -0.209 4.209 18 C -0.144 4.144 19 H 0.263 0.737 20 H 0.077 0.923 21 H 0.042 0.958 22 H 0.408 0.592 23 H 0.139 0.861 24 H 0.105 0.895 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 -8.583 -6.283 11.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.129 4.129 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.024 3.976 10 C 0.057 3.943 11 N -0.332 5.332 12 C 0.385 3.615 13 O -0.460 6.460 14 O -0.278 6.278 15 C 0.061 3.939 16 Cl -0.153 7.153 17 C -0.247 4.247 18 C -0.182 4.182 19 H 0.073 0.927 20 H 0.095 0.905 21 H 0.060 0.940 22 H 0.243 0.757 23 H 0.157 0.843 24 H 0.124 0.876 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.020 -8.469 -6.493 11.403 hybrid contribution 0.698 1.048 -0.040 1.260 sum 4.718 -7.421 -6.533 10.954 Atomic orbital electron populations 1.69951 1.05923 1.27214 1.47929 1.24984 0.94816 0.99026 0.94111 0.86670 0.79677 0.83041 0.78710 1.20156 1.21245 1.20145 1.20302 0.92902 0.88505 1.52408 0.92082 1.19024 0.99009 0.94113 0.85448 1.21130 0.85995 0.97199 0.89965 1.44870 1.12797 1.60790 1.14771 1.18306 0.82687 0.78733 0.81731 1.90993 1.20088 1.59871 1.75074 1.86446 1.38182 1.74834 1.28333 1.25878 1.02592 0.88064 0.77362 1.98773 1.89784 1.61538 1.65252 1.23045 0.98768 0.95642 1.07217 1.22505 0.92328 1.01089 1.02288 0.92678 0.90461 0.94011 0.75715 0.84318 0.87643 0.91537 0.90172 0.89628 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.99 12.91 55.43 0.72 -23.27 15 2 C 0.08 1.97 5.39 -17.82 -0.10 1.88 15 3 Si 0.89 20.49 29.55 -169.99 -5.02 15.47 15 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.50 -12.77 8.63 -34.44 -0.30 -13.07 15 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 15 9 C 0.02 0.57 1.38 -155.66 -0.21 0.36 15 10 C 0.18 3.96 5.50 -4.04 -0.02 3.94 15 11 N -0.68 -13.31 5.48 -65.28 -0.36 -13.67 15 12 C 0.63 12.18 8.56 54.06 0.46 12.65 15 13 O -0.57 -12.38 15.62 -19.28 -0.30 -12.68 15 14 O -0.36 -5.69 10.42 -40.30 -0.42 -6.11 15 15 C 0.16 1.95 7.38 101.05 0.75 2.70 15 16 Cl -0.18 -2.60 29.00 -51.86 -1.50 -4.11 15 17 C -0.21 -4.20 9.96 -26.69 -0.27 -4.47 15 18 C -0.14 -3.18 9.42 -26.69 -0.25 -3.43 15 19 H 0.26 6.99 8.32 -40.82 -0.34 6.65 15 20 H 0.08 1.97 8.14 -51.93 -0.42 1.55 15 21 H 0.04 0.89 8.09 -51.93 -0.42 0.47 15 22 H 0.41 7.47 8.48 -40.82 -0.35 7.12 15 23 H 0.14 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.11 1.19 7.70 -51.93 -0.40 0.79 15 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 26 H 0.08 1.58 8.14 -51.93 -0.42 1.16 15 27 H 0.09 2.02 8.14 -51.93 -0.42 1.59 15 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 15 LS Contribution 269.77 15.07 4.07 4.07 Total: -1.00 -28.96 269.77 -6.01 -34.97 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -3.25 Total: 4.78 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 0.06 Total: 0.55 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.36 Total: -36.94 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.72 Total: -18.79 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -1.50 Total: -4.11 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.96 -6.01 -34.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692901246.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.521 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds