Wall clock time and date at job start Mon Mar 30 2020 03:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99647 * 2 1 4 4 H 1.48495 * 109.47197 * 239.99848 * 3 2 1 5 5 H 1.48502 * 109.47361 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46765 * 120.00431 * 3 2 1 7 7 C 1.37879 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99873 * 173.56065 * 7 2 1 9 9 C 1.50692 * 119.99934 * 353.56337 * 7 2 1 10 10 C 1.53004 * 115.55352 * 85.40862 * 9 7 2 11 11 N 1.46502 * 109.46739 * 65.12262 * 10 9 7 12 12 C 1.34781 * 119.99760 * 178.21609 * 11 10 9 13 13 O 1.21505 * 119.99882 * 0.27519 * 12 11 10 14 14 O 1.34631 * 119.99927 * 180.28257 * 12 11 10 15 15 C 1.45198 * 117.00114 * 180.02562 * 14 12 11 16 16 Cl 1.80295 * 109.47363 * 74.99462 * 15 14 12 17 17 C 1.53008 * 117.50068 * 231.07911 * 9 7 2 18 18 C 1.53002 * 117.49936 * 299.73732 * 9 7 2 19 19 H 0.97003 * 120.00760 * 5.06087 * 1 2 3 20 20 H 1.08999 * 109.47098 * 305.12825 * 10 9 7 21 21 H 1.08996 * 109.47594 * 185.12460 * 10 9 7 22 22 H 0.96998 * 120.00409 * 358.49546 * 11 10 9 23 23 H 1.09004 * 109.47242 * 194.99760 * 15 14 12 24 24 H 1.09002 * 109.46943 * 314.99417 * 15 14 12 25 25 H 1.08996 * 117.50090 * 215.00296 * 17 9 7 26 26 H 1.08999 * 117.49010 * 0.02562 * 17 9 7 27 27 H 1.08996 * 117.49775 * 359.97438 * 18 9 7 28 28 H 1.09005 * 117.49534 * 144.97434 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1969 -0.1054 9 6 1.2582 -2.4950 0.1452 10 6 0.7024 -3.0859 -1.1521 11 7 1.8116 -3.4578 -2.0339 12 6 1.5607 -4.0352 -3.2256 13 8 0.4144 -4.2428 -3.5707 14 8 2.5803 -4.3821 -4.0335 15 6 2.2358 -4.9990 -5.3019 16 17 1.6109 -3.7408 -6.4321 17 6 1.7469 -3.4739 1.2148 18 6 0.4416 -2.7018 1.4224 19 1 -0.4851 0.8367 -0.0741 20 1 0.0755 -2.3456 -1.6492 21 1 0.1080 -3.9704 -0.9231 22 1 2.7268 -3.2921 -1.7583 23 1 3.1222 -5.4655 -5.7318 24 1 1.4684 -5.7563 -5.1411 25 1 1.6725 -4.5388 0.9943 26 1 2.6080 -3.1766 1.8133 27 1 0.4445 -1.8970 2.1574 28 1 -0.4919 -3.2584 1.3383 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692901246.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:21 Heat of formation + Delta-G solvation = -88.684670 kcal Electronic energy + Delta-G solvation = -14414.547130 eV Core-core repulsion = 11684.574618 eV Total energy + Delta-G solvation = -2729.972512 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.061 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.51047 -38.91392 -37.62109 -36.73546 -35.17450 -33.96420 -29.01318 -27.68311 -26.74761 -23.01236 -22.35750 -21.34019 -19.76774 -18.27506 -17.84271 -17.74183 -16.63632 -16.01045 -15.62059 -15.53104 -15.01340 -14.55406 -13.91570 -13.77331 -13.48454 -12.94201 -12.79836 -12.39826 -12.29772 -12.10628 -12.02209 -11.81598 -11.48408 -11.41551 -10.87961 -10.45702 -10.16809 -9.95221 -8.09668 -6.22503 0.94117 1.12632 1.44750 1.46031 1.52119 1.84443 2.43523 3.17421 3.21462 3.58309 3.84443 4.06617 4.21684 4.54165 4.63047 4.69289 4.82143 5.03044 5.11417 5.29326 5.44556 5.57895 5.66976 5.78319 6.36449 6.53184 6.84395 7.29576 7.47439 8.97488 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.026895 B = 0.007228 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.837459 B = 3872.961533 C = 4485.821926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.028 3.972 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.000 4.000 10 C 0.196 3.804 11 N -0.675 5.675 12 C 0.638 3.362 13 O -0.599 6.599 14 O -0.357 6.357 15 C 0.157 3.843 16 Cl -0.203 7.203 17 C -0.175 4.175 18 C -0.154 4.154 19 H 0.259 0.741 20 H 0.036 0.964 21 H 0.049 0.951 22 H 0.415 0.585 23 H 0.192 0.808 24 H 0.114 0.886 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.382 -9.666 -6.492 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.174 4.174 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.545 4.545 8 H 0.081 0.919 9 C -0.001 4.001 10 C 0.073 3.927 11 N -0.332 5.332 12 C 0.390 3.610 13 O -0.490 6.490 14 O -0.271 6.271 15 C 0.057 3.943 16 Cl -0.177 7.177 17 C -0.212 4.212 18 C -0.192 4.192 19 H 0.068 0.932 20 H 0.054 0.946 21 H 0.067 0.933 22 H 0.251 0.749 23 H 0.209 0.791 24 H 0.132 0.868 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.623 -9.565 -6.711 12.967 hybrid contribution 0.254 1.297 -0.021 1.322 sum 5.877 -8.268 -6.732 12.175 Atomic orbital electron populations 1.70070 1.07161 1.27452 1.49654 1.25660 0.95433 1.01938 0.94322 0.85795 0.78452 0.79654 0.78807 1.19907 1.21727 1.19421 1.20632 0.93164 0.89623 1.51067 0.91892 1.19048 1.00258 0.94602 0.86194 1.20696 0.86220 0.96188 0.89609 1.44688 1.12497 1.60982 1.15056 1.18313 0.82860 0.78101 0.81707 1.90978 1.21497 1.60856 1.75657 1.86462 1.36611 1.74736 1.29285 1.26613 1.05375 0.86825 0.75478 1.98776 1.90266 1.62734 1.65939 1.23037 0.97440 0.96368 1.04335 1.22450 0.93932 1.01372 1.01465 0.93160 0.94602 0.93309 0.74854 0.79069 0.86821 0.88914 0.89550 0.91727 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.54 12.91 21.45 0.28 -50.26 15 2 C 0.03 1.44 5.39 84.66 0.46 1.90 15 3 Si 0.95 42.02 29.55 68.60 2.03 44.05 15 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 5 H -0.29 -13.04 7.11 99.48 0.71 -12.34 15 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 7 C -0.51 -25.44 8.63 25.60 0.22 -25.22 15 8 H 0.06 3.06 7.82 -2.91 -0.02 3.04 15 9 C 0.00 -0.01 1.38 -52.93 -0.07 -0.08 15 10 C 0.20 8.62 5.50 86.38 0.48 9.09 15 11 N -0.68 -25.83 5.48 -590.85 -3.24 -29.07 15 12 C 0.64 23.67 8.56 129.79 1.11 24.78 15 13 O -0.60 -25.52 15.62 19.83 0.31 -25.21 15 14 O -0.36 -10.34 10.42 -55.40 -0.58 -10.92 15 15 C 0.16 3.33 7.38 113.37 0.84 4.16 15 16 Cl -0.20 -5.60 29.00 -2.72 -0.08 -5.68 15 17 C -0.17 -6.59 9.96 30.62 0.30 -6.28 15 18 C -0.15 -6.70 9.42 30.62 0.29 -6.41 15 19 H 0.26 14.07 8.32 -92.71 -0.77 13.30 15 20 H 0.04 1.87 8.14 -2.39 -0.02 1.85 15 21 H 0.05 2.06 8.09 -2.39 -0.02 2.04 15 22 H 0.42 14.52 8.48 -92.71 -0.79 13.74 15 23 H 0.19 2.02 8.14 -2.39 -0.02 2.00 15 24 H 0.11 2.28 7.70 -2.39 -0.02 2.26 15 25 H 0.09 3.03 8.14 -2.39 -0.02 3.01 15 26 H 0.09 3.16 8.14 -2.39 -0.02 3.14 15 27 H 0.06 3.06 8.14 -2.39 -0.02 3.04 15 28 H 0.07 3.09 8.14 -2.38 -0.02 3.07 15 Total: -1.00 -61.81 269.77 2.73 -59.08 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.39 Total: 16.06 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 3.62 Total: 1.94 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -2.96 Total: -79.33 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.27 Total: -36.12 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 17 Polarization: -5.60 SS G_CDS: -0.08 Total: -5.68 kcal Total: -61.81 2.73 -59.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692901246.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.601 kcal (2) G-P(sol) polarization free energy of solvation -61.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds