Wall clock time and date at job start Mon Mar 30 2020 03:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30527 * 1 3 3 Si 1.86793 * 120.00208 * 2 1 4 4 H 1.48507 * 109.47083 * 269.99965 * 3 2 1 5 5 H 1.48494 * 109.47408 * 29.99729 * 3 2 1 6 6 H 1.48497 * 109.47313 * 149.99917 * 3 2 1 7 7 C 1.40427 * 119.99507 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99794 * 180.02562 * 7 2 1 9 9 C 1.40367 * 120.00342 * 359.97438 * 7 2 1 10 10 N 1.33191 * 126.67554 * 180.26705 * 9 7 2 11 11 C 1.34331 * 105.47588 * 180.13098 * 10 9 7 12 12 C 1.48325 * 126.20477 * 179.88364 * 11 10 9 13 13 C 1.39587 * 120.55670 * 179.71213 * 12 11 10 14 14 C 1.38516 * 118.37246 * 180.02562 * 13 12 11 15 15 C 1.38228 * 119.41492 * 0.02562 * 14 13 12 16 16 N 1.31926 * 121.10346 * 0.28198 * 15 14 13 17 17 C 1.32200 * 121.76717 * 359.42178 * 16 15 14 18 18 O 1.35567 * 119.76683 * 180.27375 * 17 16 15 19 19 N 1.31315 * 107.57823 * 359.61887 * 11 10 9 20 20 O 1.21265 * 110.52544 * 0.24456 * 19 11 10 21 21 H 0.97007 * 119.99486 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.81586 * 0.04396 * 13 12 11 23 23 H 1.08001 * 120.29456 * 179.97438 * 14 13 12 24 24 H 1.08002 * 119.44577 * 179.97438 * 15 14 13 25 25 H 0.96703 * 113.99910 * 270.29580 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6176 0.0000 4 1 2.4868 2.0463 -1.4001 5 1 1.4368 2.6526 0.6999 6 1 3.5368 1.4401 0.7000 7 6 2.0073 -1.2162 0.0005 8 1 3.0873 -1.2162 0.0010 9 6 1.3054 -2.4318 0.0016 10 7 1.8327 -3.6549 0.0072 11 6 0.7858 -4.4966 0.0030 12 6 0.8530 -5.9783 0.0040 13 6 -0.3157 -6.7416 0.0052 14 6 -0.2003 -8.1220 0.0067 15 6 1.0562 -8.6982 0.0075 16 7 2.1465 -7.9555 0.0125 17 6 2.0891 -6.6348 0.0055 18 8 3.2355 -5.9112 0.0053 19 7 -0.3076 -3.7695 0.0035 20 8 -0.0329 -2.5884 0.0027 21 1 -0.4850 0.8401 0.0004 22 1 -1.2861 -6.2676 0.0047 23 1 -1.0842 -8.7426 0.0081 24 1 1.1467 -9.7744 0.0091 25 1 3.5678 -5.7006 0.8887 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695716150.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:02 Heat of formation + Delta-G solvation = 20.036238 kcal Electronic energy + Delta-G solvation = -15399.989483 eV Core-core repulsion = 12573.623970 eV Total energy + Delta-G solvation = -2826.365513 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.06293 -41.34246 -37.94383 -36.09995 -35.89624 -33.78901 -32.29256 -30.93421 -28.55126 -25.66249 -24.53476 -23.33081 -22.58072 -19.98557 -19.64504 -17.95586 -17.87263 -17.42091 -17.04653 -16.74621 -16.15131 -15.40473 -15.06314 -14.28944 -14.11955 -13.69108 -13.58134 -13.12638 -13.09606 -12.57521 -12.40801 -12.23948 -11.98192 -11.67967 -11.07897 -10.91723 -10.51191 -10.44729 -9.59933 -8.97416 -7.11383 -0.30906 0.10320 1.00504 1.40894 1.57782 1.61489 2.02939 2.14995 2.58078 2.79563 3.00180 3.05713 3.30968 3.70532 3.82453 3.94473 4.37837 4.45020 4.56668 4.92728 4.98665 5.13959 5.31731 5.54806 5.84257 6.03109 6.24192 6.42347 6.62150 6.87519 8.03994 8.20899 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.057934 B = 0.006428 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.193306 B = 4354.702329 C = 4825.520780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.029 3.971 3 Si 1.022 2.978 4 H -0.255 1.255 5 H -0.258 1.258 6 H -0.248 1.248 7 C -0.431 4.431 8 H 0.123 0.877 9 C 0.268 3.732 10 N -0.607 5.607 11 C 0.200 3.800 12 C -0.098 4.098 13 C -0.046 4.046 14 C -0.164 4.164 15 C 0.131 3.869 16 N -0.521 5.521 17 C 0.328 3.672 18 O -0.474 6.474 19 N -0.482 5.482 20 O 0.019 5.981 21 H 0.306 0.694 22 H 0.141 0.859 23 H 0.191 0.809 24 H 0.212 0.788 25 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.116 -7.848 1.750 8.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.193 4.193 3 Si 0.839 3.161 4 H -0.179 1.179 5 H -0.182 1.182 6 H -0.171 1.171 7 C -0.468 4.468 8 H 0.141 0.859 9 C 0.080 3.920 10 N -0.351 5.351 11 C -0.072 4.072 12 C -0.103 4.103 13 C -0.073 4.073 14 C -0.183 4.183 15 C -0.027 4.027 16 N -0.241 5.241 17 C 0.148 3.852 18 O -0.282 6.282 19 N -0.216 5.216 20 O -0.025 6.025 21 H 0.118 0.882 22 H 0.158 0.842 23 H 0.208 0.792 24 H 0.228 0.772 25 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 0.288 -8.621 1.175 8.706 hybrid contribution -0.563 1.546 0.398 1.693 sum -0.275 -7.075 1.573 7.253 Atomic orbital electron populations 1.69694 1.09718 1.33015 1.29789 1.27386 0.95927 1.05798 0.90233 0.84605 0.78677 0.72660 0.80208 1.17907 1.18209 1.17083 1.19150 0.95801 0.85982 1.45842 0.85900 1.24887 0.79939 0.95306 0.91891 1.72492 1.27746 0.98036 1.36804 1.23665 0.86381 0.96039 1.01124 1.18908 0.95868 0.87363 1.08155 1.21829 0.97157 0.95042 0.93270 1.22505 1.01249 0.93288 1.01273 1.23500 0.86167 1.01634 0.91397 1.67371 1.35722 1.05126 1.15836 1.19219 0.84967 0.86901 0.94081 1.84709 1.38190 1.70860 1.34403 1.74502 1.24457 0.90811 1.31830 1.85439 1.26312 1.18464 1.72323 0.88204 0.84164 0.79213 0.77199 0.73201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.39 12.05 21.91 0.26 -40.13 15 2 C 0.03 1.36 5.50 85.42 0.47 1.83 15 3 Si 1.02 34.50 29.56 68.60 2.03 36.53 15 4 H -0.25 -8.25 7.11 99.48 0.71 -7.54 15 5 H -0.26 -8.09 7.11 99.48 0.71 -7.38 15 6 H -0.25 -8.00 7.11 99.48 0.71 -7.30 15 7 C -0.43 -22.98 9.48 23.32 0.22 -22.76 15 8 H 0.12 6.13 7.85 -2.91 -0.02 6.11 15 9 C 0.27 15.78 7.80 85.06 0.66 16.45 15 10 N -0.61 -34.45 10.15 -305.06 -3.10 -37.54 15 11 C 0.20 10.67 7.76 137.39 1.07 11.74 15 12 C -0.10 -4.19 5.91 -19.85 -0.12 -4.30 15 13 C -0.05 -1.52 9.82 22.66 0.22 -1.30 15 14 C -0.16 -3.67 10.09 22.33 0.23 -3.45 15 15 C 0.13 3.00 11.17 84.68 0.95 3.94 15 16 N -0.52 -17.09 10.37 -308.19 -3.20 -20.29 15 17 C 0.33 13.06 7.76 85.05 0.66 13.72 15 18 O -0.47 -19.61 11.90 -88.74 -1.06 -20.66 15 19 N -0.48 -27.37 11.91 -56.03 -0.67 -28.04 15 20 O 0.02 1.16 9.71 64.36 0.63 1.79 15 21 H 0.31 13.53 8.29 -92.70 -0.77 12.76 15 22 H 0.14 4.66 7.94 -2.91 -0.02 4.64 15 23 H 0.19 2.33 8.06 -2.91 -0.02 2.31 15 24 H 0.21 2.59 8.06 -2.91 -0.02 2.57 15 25 H 0.41 13.95 9.06 -74.06 -0.67 13.28 15 Total: -1.00 -72.87 241.53 -0.15 -73.02 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.59 Total: 19.44 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 4.36 Total: 15.88 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -6.70 Total: -126.00 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.43 Total: -18.87 kcal Atomic # 14 Polarization: 34.50 SS G_CDS: 2.03 Total: 36.53 kcal Total: -72.87 -0.15 -73.02 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695716150.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.060 kcal (2) G-P(sol) polarization free energy of solvation -72.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds