Wall clock time and date at job start Mon Mar 30 2020 02:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53940 * 113.73401 * 2 1 4 4 N 1.48184 * 86.10177 * 90.77847 * 3 2 1 5 5 C 1.39855 * 111.06903 * 137.51878 * 4 3 2 6 6 C 1.39598 * 119.83856 * 222.98048 * 5 4 3 7 7 C 1.38062 * 120.54834 * 179.75883 * 6 5 4 8 8 C 1.38745 * 120.21694 * 0.52359 * 7 6 5 9 9 N 1.38867 * 120.16002 * 179.76156 * 8 7 6 10 10 C 1.41565 * 119.67413 * 359.73762 * 8 7 6 11 11 C 1.41022 * 120.26584 * 180.02562 * 10 8 7 12 12 H 1.08001 * 120.00116 * 25.19747 * 11 10 8 13 13 C 1.39887 * 120.00005 * 205.19991 * 11 10 8 14 14 N 1.30897 * 120.00035 * 18.13599 * 13 11 10 15 15 Si 1.86799 * 119.99978 * 198.14057 * 13 11 10 16 16 H 1.48502 * 109.47278 * 89.99487 * 15 13 11 17 17 H 1.48502 * 109.47211 * 209.99687 * 15 13 11 18 18 H 1.48497 * 109.47157 * 329.99484 * 15 13 11 19 19 C 1.38007 * 119.83848 * 43.26040 * 5 4 3 20 20 C 1.47964 * 90.79830 * 24.60206 * 4 3 2 21 21 H 1.09005 * 109.46992 * 321.23345 * 1 2 3 22 22 H 1.09000 * 109.47542 * 81.23293 * 1 2 3 23 23 H 1.09000 * 109.47373 * 201.23597 * 1 2 3 24 24 H 1.08998 * 112.94032 * 228.43322 * 2 1 3 25 25 H 1.09000 * 113.75994 * 205.06472 * 3 2 1 26 26 H 1.09004 * 113.75824 * 336.42336 * 3 2 1 27 27 H 1.08004 * 119.72841 * 0.02562 * 6 5 4 28 28 H 1.08002 * 119.89257 * 180.28332 * 7 6 5 29 29 H 0.96996 * 119.99196 * 186.14190 * 9 8 7 30 30 H 0.96996 * 120.00049 * 6.14421 * 9 8 7 31 31 H 0.96998 * 120.00568 * 184.99264 * 14 13 11 32 32 H 1.08002 * 120.11288 * 359.97438 * 19 5 4 33 33 H 1.09001 * 113.75988 * 221.08181 * 20 4 3 34 34 H 1.08994 * 113.86110 * 89.73338 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1496 1.4092 0.0000 4 7 2.1274 1.3089 1.4783 5 6 3.3139 1.7988 2.0333 6 6 3.9324 1.1043 3.0744 7 6 5.1067 1.5720 3.6297 8 6 5.6799 2.7467 3.1643 9 7 6.8584 3.2187 3.7271 10 6 5.0577 3.4614 2.1125 11 6 5.6298 4.6564 1.6294 12 1 6.6904 4.8295 1.7371 13 6 4.8235 5.6177 1.0108 14 7 3.5264 5.5943 1.1850 15 14 5.5979 6.9347 -0.0640 16 1 5.6681 6.4511 -1.4663 17 1 4.7735 8.1685 -0.0065 18 1 6.9678 7.2314 0.4263 19 6 3.8646 2.9696 1.5530 20 6 2.1496 -0.1685 1.3990 21 1 -0.3633 0.8013 0.6435 22 1 -0.3634 0.1566 -1.0156 23 1 -0.3634 -0.9579 0.3722 24 1 1.9548 -0.6660 -0.7510 25 1 3.1536 1.4475 -0.4226 26 1 1.4893 2.1792 -0.3990 27 1 3.4910 0.1912 3.4457 28 1 5.5786 1.0238 4.4317 29 1 7.2096 4.0834 3.4629 30 1 7.3304 2.6837 4.3842 31 1 2.9605 6.2148 0.6996 32 1 3.3810 3.5064 0.7501 33 1 1.4893 -0.6567 2.1159 34 1 3.1528 -0.5943 1.3867 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697957824.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:15 Heat of formation + Delta-G solvation = 51.606082 kcal Electronic energy + Delta-G solvation = -16158.119888 eV Core-core repulsion = 13670.215447 eV Total energy + Delta-G solvation = -2487.904442 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.91450 -37.27206 -33.56957 -33.24941 -30.41389 -29.56245 -27.05912 -26.08057 -24.71286 -23.79871 -20.95648 -19.86501 -18.49806 -17.31226 -16.08298 -15.55319 -15.40583 -14.72259 -14.66269 -13.79171 -13.20603 -12.96718 -12.54685 -12.32963 -12.09295 -11.96275 -11.57054 -11.30270 -11.18852 -11.09539 -11.02423 -10.46438 -10.38597 -10.15124 -9.90565 -9.42358 -9.30990 -9.05341 -8.13183 -7.34021 -6.68302 -5.95401 -4.11252 2.84183 3.12033 3.14312 3.15360 3.25567 4.01333 4.55760 4.78754 4.79640 5.30082 5.31149 5.59443 5.69707 5.80830 5.92216 5.97941 6.12108 6.17371 6.20602 6.30689 6.45274 6.53318 6.55228 6.67833 7.06451 7.23037 7.25330 7.53328 7.67632 7.76519 7.99702 8.23676 8.34460 8.63342 8.84098 8.89751 9.14344 9.21728 10.33009 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.009161 C = 0.006852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.631741 B = 3055.867625 C = 4085.664567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.127 4.127 3 C 0.019 3.981 4 N -0.429 5.429 5 C 0.035 3.965 6 C -0.211 4.211 7 C -0.168 4.168 8 C 0.106 3.894 9 N -0.886 5.886 10 C 0.076 3.924 11 C -0.465 4.465 12 H 0.072 0.928 13 C 0.077 3.923 14 N -0.795 5.795 15 Si 0.899 3.101 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.265 1.265 19 C -0.154 4.154 20 C 0.012 3.988 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.390 0.610 30 H 0.376 0.624 31 H 0.277 0.723 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 -6.327 -2.463 6.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C -0.109 4.109 4 N -0.146 5.146 5 C -0.062 4.062 6 C -0.233 4.233 7 C -0.192 4.192 8 C 0.004 3.996 9 N -0.428 5.428 10 C 0.071 3.929 11 C -0.496 4.496 12 H 0.090 0.910 13 C -0.139 4.139 14 N -0.422 5.422 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.177 4.177 20 C -0.116 4.116 21 H 0.084 0.916 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.219 0.781 30 H 0.201 0.799 31 H 0.088 0.912 32 H 0.140 0.860 33 H 0.096 0.904 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.010 -5.834 -2.143 6.532 hybrid contribution 1.265 0.531 -0.545 1.476 sum -0.746 -5.302 -2.689 5.992 Atomic orbital electron populations 1.21497 0.93605 1.01885 1.01400 1.22867 0.96553 0.97708 0.97496 1.23928 1.00459 0.96322 0.90206 1.65977 1.32330 1.07185 1.09097 1.19072 0.90845 0.97318 0.98917 1.19883 0.98598 1.01747 1.03074 1.19825 0.98400 0.97959 1.02988 1.17953 0.90153 0.95931 0.95515 1.41877 1.27049 1.23601 1.50256 1.17115 0.92868 0.92922 0.89992 1.19127 0.95118 1.00402 1.34973 0.91031 1.25747 0.94644 0.98026 0.95503 1.69880 1.04818 1.34332 1.33153 0.86464 0.80076 0.80085 0.80962 1.19560 1.20550 1.18895 1.20783 0.98723 0.95076 1.03069 1.23934 1.00195 0.91349 0.96107 0.91570 0.92976 0.92916 0.90986 0.90993 0.90025 0.89359 0.89478 0.78114 0.79925 0.91186 0.86047 0.90383 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.64 37.16 0.36 -1.29 16 2 C -0.13 -1.90 4.59 -89.69 -0.41 -2.31 16 3 C 0.02 0.34 6.40 -2.63 -0.02 0.32 16 4 N -0.43 -8.95 6.21 -174.37 -1.08 -10.03 16 5 C 0.04 0.84 5.41 -83.77 -0.45 0.39 16 6 C -0.21 -4.88 8.78 -39.14 -0.34 -5.22 16 7 C -0.17 -3.86 9.87 -39.46 -0.39 -4.25 16 8 C 0.11 2.57 6.79 -83.22 -0.56 2.00 16 9 N -0.89 -18.01 8.97 32.75 0.29 -17.72 16 10 C 0.08 2.04 5.58 -106.66 -0.59 1.44 16 11 C -0.47 -12.21 8.45 -37.91 -0.32 -12.53 16 12 H 0.07 1.79 6.77 -52.49 -0.36 1.43 16 13 C 0.08 1.96 5.12 -17.33 -0.09 1.87 16 14 N -0.80 -21.09 11.02 55.55 0.61 -20.48 16 15 Si 0.90 18.93 29.60 -169.99 -5.03 13.90 16 16 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 19 C -0.15 -4.05 7.52 -38.75 -0.29 -4.34 16 20 C 0.01 0.21 6.31 -2.76 -0.02 0.19 16 21 H 0.07 0.96 8.00 -51.93 -0.42 0.55 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.39 7.54 -51.93 -0.39 1.00 16 26 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 27 H 0.09 1.86 7.15 -52.48 -0.38 1.48 16 28 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.39 7.80 7.10 -40.82 -0.29 7.51 16 30 H 0.38 6.41 8.84 -40.82 -0.36 6.05 16 31 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 32 H 0.12 3.32 5.57 -52.49 -0.29 3.03 16 33 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.07 1.23 7.32 -51.93 -0.38 0.85 16 LS Contribution 276.82 15.07 4.17 4.17 Total: -1.00 -28.52 276.82 -8.70 -37.22 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -4.53 Total: 16.66 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -3.13 Total: -23.72 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.18 Total: -48.23 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.52 -8.70 -37.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697957824.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.826 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds