Wall clock time and date at job start Mon Mar 30 2020 02:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53940 * 113.73401 * 2 1 4 4 N 1.48184 * 86.10177 * 90.77847 * 3 2 1 5 5 C 1.39855 * 111.06903 * 137.51878 * 4 3 2 6 6 C 1.39598 * 119.83856 * 222.98048 * 5 4 3 7 7 C 1.38062 * 120.54834 * 179.75883 * 6 5 4 8 8 C 1.38745 * 120.21694 * 0.52359 * 7 6 5 9 9 N 1.38867 * 120.16002 * 179.76156 * 8 7 6 10 10 C 1.41565 * 119.67413 * 359.73762 * 8 7 6 11 11 C 1.41022 * 120.26584 * 180.02562 * 10 8 7 12 12 H 1.08001 * 120.00116 * 25.19747 * 11 10 8 13 13 C 1.39887 * 120.00005 * 205.19991 * 11 10 8 14 14 N 1.30897 * 120.00035 * 18.13599 * 13 11 10 15 15 Si 1.86799 * 119.99978 * 198.14057 * 13 11 10 16 16 H 1.48502 * 109.47278 * 89.99487 * 15 13 11 17 17 H 1.48502 * 109.47211 * 209.99687 * 15 13 11 18 18 H 1.48497 * 109.47157 * 329.99484 * 15 13 11 19 19 C 1.38007 * 119.83848 * 43.26040 * 5 4 3 20 20 C 1.47964 * 90.79830 * 24.60206 * 4 3 2 21 21 H 1.09005 * 109.46992 * 321.23345 * 1 2 3 22 22 H 1.09000 * 109.47542 * 81.23293 * 1 2 3 23 23 H 1.09000 * 109.47373 * 201.23597 * 1 2 3 24 24 H 1.08998 * 112.94032 * 228.43322 * 2 1 3 25 25 H 1.09000 * 113.75994 * 205.06472 * 3 2 1 26 26 H 1.09004 * 113.75824 * 336.42336 * 3 2 1 27 27 H 1.08004 * 119.72841 * 0.02562 * 6 5 4 28 28 H 1.08002 * 119.89257 * 180.28332 * 7 6 5 29 29 H 0.96996 * 119.99196 * 186.14190 * 9 8 7 30 30 H 0.96996 * 120.00049 * 6.14421 * 9 8 7 31 31 H 0.96998 * 120.00568 * 184.99264 * 14 13 11 32 32 H 1.08002 * 120.11288 * 359.97438 * 19 5 4 33 33 H 1.09001 * 113.75988 * 221.08181 * 20 4 3 34 34 H 1.08994 * 113.86110 * 89.73338 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1496 1.4092 0.0000 4 7 2.1274 1.3089 1.4783 5 6 3.3139 1.7988 2.0333 6 6 3.9324 1.1043 3.0744 7 6 5.1067 1.5720 3.6297 8 6 5.6799 2.7467 3.1643 9 7 6.8584 3.2187 3.7271 10 6 5.0577 3.4614 2.1125 11 6 5.6298 4.6564 1.6294 12 1 6.6904 4.8295 1.7371 13 6 4.8235 5.6177 1.0108 14 7 3.5264 5.5943 1.1850 15 14 5.5979 6.9347 -0.0640 16 1 5.6681 6.4511 -1.4663 17 1 4.7735 8.1685 -0.0065 18 1 6.9678 7.2314 0.4263 19 6 3.8646 2.9696 1.5530 20 6 2.1496 -0.1685 1.3990 21 1 -0.3633 0.8013 0.6435 22 1 -0.3634 0.1566 -1.0156 23 1 -0.3634 -0.9579 0.3722 24 1 1.9548 -0.6660 -0.7510 25 1 3.1536 1.4475 -0.4226 26 1 1.4893 2.1792 -0.3990 27 1 3.4910 0.1912 3.4457 28 1 5.5786 1.0238 4.4317 29 1 7.2096 4.0834 3.4629 30 1 7.3304 2.6837 4.3842 31 1 2.9605 6.2148 0.6996 32 1 3.3810 3.5064 0.7501 33 1 1.4893 -0.6567 2.1159 34 1 3.1528 -0.5943 1.3867 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697957824.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:14 Heat of formation + Delta-G solvation = 32.869699 kcal Electronic energy + Delta-G solvation = -16158.932359 eV Core-core repulsion = 13670.215447 eV Total energy + Delta-G solvation = -2488.716912 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.44777 -39.02764 -35.45422 -34.90706 -31.86256 -31.45636 -28.64592 -27.65946 -26.40071 -25.34841 -22.81331 -21.55519 -19.89775 -19.09932 -17.86085 -17.28660 -17.07093 -16.46151 -16.12427 -15.32295 -14.89467 -14.38781 -14.13214 -13.83375 -13.78473 -13.65478 -13.24818 -12.93324 -12.77710 -12.64567 -12.49279 -12.10745 -12.01694 -11.53646 -11.47001 -11.14715 -11.00888 -10.93951 -9.76365 -9.26836 -8.57402 -7.73792 -6.06263 1.03144 1.28567 1.38979 1.50677 1.52866 2.24614 2.78456 3.21370 3.50148 3.65675 3.84794 4.04533 4.30046 4.43200 4.56715 4.60595 4.71048 4.73880 4.76151 4.96821 5.06022 5.12454 5.16609 5.18183 5.33568 5.47371 5.53151 5.70455 5.86093 5.96602 6.16763 6.39003 6.45409 6.84311 6.94202 7.02397 7.32778 7.56330 8.45960 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.009161 C = 0.006852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.631741 B = 3055.867625 C = 4085.664567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C 0.012 3.988 4 N -0.451 5.451 5 C 0.029 3.971 6 C -0.213 4.213 7 C -0.174 4.174 8 C 0.095 3.905 9 N -0.874 5.874 10 C 0.040 3.960 11 C -0.492 4.492 12 H 0.076 0.924 13 C 0.034 3.966 14 N -0.833 5.833 15 Si 0.972 3.028 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.256 1.256 19 C -0.178 4.178 20 C 0.012 3.988 21 H 0.045 0.955 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.392 0.608 30 H 0.393 0.607 31 H 0.281 0.719 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.104 -7.545 -2.606 8.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.123 4.123 3 C -0.115 4.115 4 N -0.168 5.168 5 C -0.068 4.068 6 C -0.235 4.235 7 C -0.198 4.198 8 C -0.008 4.008 9 N -0.418 5.418 10 C 0.034 3.966 11 C -0.523 4.523 12 H 0.094 0.906 13 C -0.179 4.179 14 N -0.461 5.461 15 Si 0.794 3.206 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.180 1.180 19 C -0.200 4.200 20 C -0.115 4.115 21 H 0.064 0.936 22 H 0.088 0.912 23 H 0.094 0.906 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.220 0.780 30 H 0.221 0.779 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.910 -7.073 -2.266 7.669 hybrid contribution 1.199 0.812 -0.435 1.512 sum -0.711 -6.261 -2.702 6.856 Atomic orbital electron populations 1.21493 0.91866 1.02378 1.02266 1.22817 0.97734 0.95053 0.96720 1.23923 0.99908 0.98902 0.88812 1.65930 1.30717 1.09816 1.10312 1.19299 0.91664 0.96734 0.99095 1.20225 0.98560 1.02258 1.02422 1.20182 0.98421 0.97688 1.03479 1.18135 0.91174 0.96257 0.95242 1.41755 1.26004 1.23816 1.50177 1.17514 0.93768 0.93931 0.91343 1.19381 0.95466 1.00985 1.36422 0.90600 1.26587 0.94926 1.00050 0.96343 1.69967 1.06244 1.35624 1.34267 0.85348 0.79334 0.77066 0.78833 1.19232 1.20108 1.17959 1.20736 0.99504 0.96303 1.03502 1.24032 1.00710 0.88754 0.97988 0.93593 0.91214 0.90620 0.88468 0.92679 0.90697 0.87090 0.86552 0.77969 0.77889 0.90905 0.88208 0.88705 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 9.64 71.98 0.69 -2.17 16 2 C -0.10 -2.89 4.59 -10.15 -0.05 -2.93 16 3 C 0.01 0.45 6.40 86.37 0.55 1.00 16 4 N -0.45 -18.76 6.21 -705.58 -4.38 -23.14 16 5 C 0.03 1.42 5.41 38.13 0.21 1.63 16 6 C -0.21 -9.62 8.78 22.56 0.20 -9.43 16 7 C -0.17 -7.77 9.87 22.35 0.22 -7.55 16 8 C 0.09 4.57 6.79 38.97 0.26 4.84 16 9 N -0.87 -34.83 8.97 -50.30 -0.45 -35.28 16 10 C 0.04 2.17 5.58 -21.18 -0.12 2.06 16 11 C -0.49 -26.43 8.45 23.35 0.20 -26.23 16 12 H 0.08 3.84 6.77 -2.91 -0.02 3.82 16 13 C 0.03 1.75 5.12 85.23 0.44 2.19 16 14 N -0.83 -45.80 11.02 21.82 0.24 -45.56 16 15 Si 0.97 39.46 29.60 68.60 2.03 41.49 16 16 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 17 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 19 C -0.18 -9.69 7.52 22.81 0.17 -9.52 16 20 C 0.01 0.40 6.31 86.41 0.55 0.95 16 21 H 0.04 1.26 8.00 -2.38 -0.02 1.24 16 22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.05 2.20 7.54 -2.39 -0.02 2.18 16 26 H 0.07 2.80 8.10 -2.38 -0.02 2.78 16 27 H 0.11 4.43 7.15 -2.91 -0.02 4.41 16 28 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 29 H 0.39 15.50 7.10 -92.71 -0.66 14.84 16 30 H 0.39 12.73 8.84 -92.71 -0.82 11.91 16 31 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 32 H 0.10 5.77 5.57 -2.91 -0.02 5.75 16 33 H 0.09 2.71 8.10 -2.39 -0.02 2.69 16 34 H 0.07 2.24 7.32 -2.39 -0.02 2.22 16 Total: -1.00 -62.65 276.82 0.40 -62.25 By element: Atomic # 1 Polarization: 45.77 SS G_CDS: -0.36 Total: 45.41 kcal Atomic # 6 Polarization: -48.49 SS G_CDS: 3.32 Total: -45.17 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -4.59 Total: -103.98 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -62.65 0.40 -62.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697957824.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.117 kcal (2) G-P(sol) polarization free energy of solvation -62.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds