Wall clock time and date at job start Mon Mar 30 2020 03:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86794 * 120.00062 * 2 1 4 4 H 1.48502 * 109.47298 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47286 * 300.00522 * 3 2 1 6 6 H 1.48501 * 109.47076 * 60.00310 * 3 2 1 7 7 C 1.40052 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99628 * 180.02562 * 7 2 1 9 9 C 1.46367 * 120.00102 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00175 * 0.02562 * 9 7 2 11 11 N 1.34781 * 119.99756 * 180.02562 * 9 7 2 12 12 C 1.46508 * 119.99915 * 179.97438 * 11 9 7 13 13 C 1.52989 * 109.47140 * 180.02562 * 12 11 9 14 14 C 1.53046 * 113.15245 * 275.37291 * 13 12 11 15 15 S 1.81421 * 89.89146 * 211.85103 * 14 13 12 16 16 O 1.42100 * 112.75626 * 280.47671 * 15 14 13 17 17 O 1.42102 * 112.75037 * 136.72699 * 15 14 13 18 18 C 1.53046 * 113.15293 * 175.00208 * 13 12 11 19 19 H 0.97003 * 119.99799 * 359.97438 * 1 2 3 20 20 H 0.96996 * 120.00209 * 0.02562 * 11 9 7 21 21 H 1.09003 * 109.46841 * 59.99531 * 12 11 9 22 22 H 1.09005 * 109.47044 * 300.00495 * 12 11 9 23 23 H 1.08997 * 112.53000 * 45.18612 * 13 12 11 24 24 H 1.08999 * 113.14496 * 327.11375 * 14 13 12 25 25 H 1.08999 * 113.14487 * 96.59446 * 14 13 12 26 26 H 1.08997 * 113.14353 * 263.40546 * 18 13 12 27 27 H 1.08999 * 113.14822 * 32.88700 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8821 2.3963 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9491 -3.6477 -0.0005 12 6 1.2165 -4.9165 0.0000 13 6 2.2107 -6.0793 0.0005 14 6 2.7019 -6.4517 -1.4003 15 16 2.8539 -8.1839 -0.8828 16 8 4.0390 -8.4335 -0.1395 17 8 2.3590 -9.0936 -1.8558 18 6 1.5362 -7.4476 0.1238 19 1 -0.4850 0.8401 0.0004 20 1 2.9190 -3.6477 -0.0002 21 1 0.5895 -4.9744 -0.8897 22 1 0.5901 -4.9740 0.8903 23 1 3.0214 -5.9353 0.7147 24 1 1.9482 -6.2999 -2.1730 25 1 3.6584 -5.9949 -1.6544 26 1 1.5164 -7.8250 1.1461 27 1 0.5579 -7.4878 -0.3552 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701971654.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:03 Heat of formation + Delta-G solvation = -90.760801 kcal Electronic energy + Delta-G solvation = -14166.503507 eV Core-core repulsion = 11438.484673 eV Total energy + Delta-G solvation = -2728.018833 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.15215 -37.38846 -36.51029 -36.10065 -32.85396 -32.05911 -27.33146 -26.75566 -25.13361 -20.87483 -19.80834 -18.90845 -17.37330 -16.54044 -16.29020 -16.26393 -15.39411 -15.15886 -14.22642 -14.02047 -13.39055 -13.16590 -12.83988 -12.38073 -12.35118 -12.28528 -11.91838 -11.40385 -11.20263 -11.11461 -10.85618 -10.59358 -10.43470 -10.36497 -10.21222 -8.89952 -7.67852 -7.58472 -6.23195 -4.68713 0.04745 1.87046 3.10277 3.18640 3.22959 3.55726 3.88547 4.01968 4.13797 4.54218 4.63047 4.77553 5.04779 5.10617 5.33312 5.41408 5.64969 5.72674 5.83436 6.35138 6.41709 7.39507 7.86642 8.01878 8.27764 8.98367 9.46664 10.54968 10.73143 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.066529 B = 0.005015 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.769211 B = 5582.129591 C = 5799.939090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.086 3.914 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.553 3.447 10 O -0.581 6.581 11 N -0.769 5.769 12 C 0.157 3.843 13 C -0.079 4.079 14 C -0.589 4.589 15 S 2.403 3.597 16 O -0.920 6.920 17 O -0.933 6.933 18 C -0.591 4.591 19 H 0.268 0.732 20 H 0.381 0.619 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.115 0.885 24 H 0.145 0.855 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.968 -12.288 -0.908 13.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.357 3.643 10 O -0.464 6.464 11 N -0.425 5.425 12 C 0.030 3.970 13 C -0.100 4.100 14 C -0.719 4.719 15 S 2.586 3.414 16 O -0.917 6.917 17 O -0.930 6.930 18 C -0.720 4.720 19 H 0.079 0.921 20 H 0.212 0.788 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.133 0.867 24 H 0.163 0.837 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.489 -13.244 -1.125 14.381 hybrid contribution 0.320 1.824 0.238 1.867 sum 5.809 -11.420 -0.888 12.843 Atomic orbital electron populations 1.70033 1.07077 1.27214 1.35321 1.25724 0.94636 1.00365 0.92599 0.86305 0.80459 0.81679 0.78229 1.18777 1.20161 1.20149 1.20919 0.93633 0.89358 1.54327 0.91343 1.18241 0.87218 0.82433 0.76373 1.90602 1.14100 1.86836 1.54879 1.46138 1.08603 1.04749 1.82982 1.20666 0.92563 0.82394 1.01394 1.21738 0.99420 0.94750 0.94132 1.31034 1.10693 1.24343 1.05805 1.08578 0.77418 0.77474 0.77938 1.93702 1.42894 1.84818 1.70321 1.93624 1.80328 1.61659 1.57430 1.30954 1.18064 1.07114 1.15896 0.92126 0.78762 0.92589 0.92491 0.86684 0.83704 0.85626 0.85725 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.82 11.83 55.55 0.66 -22.17 15 2 C 0.09 2.39 5.50 -17.36 -0.10 2.29 15 3 Si 0.91 19.87 29.56 -169.99 -5.02 14.85 15 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 15 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 7 C -0.55 -15.16 9.54 -35.63 -0.34 -15.50 15 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 15 9 C 0.55 15.42 7.75 -12.99 -0.10 15.32 15 10 O -0.58 -18.58 15.02 5.20 0.08 -18.50 15 11 N -0.77 -16.29 5.55 -61.72 -0.34 -16.63 15 12 C 0.16 2.72 5.45 -4.04 -0.02 2.70 15 13 C -0.08 -0.93 3.42 -90.58 -0.31 -1.24 15 14 C -0.59 -5.66 7.49 37.18 0.28 -5.39 15 15 S 2.40 21.43 7.55 -107.50 -0.81 20.62 15 16 O -0.92 -10.99 18.18 -57.30 -1.04 -12.03 15 17 O -0.93 -11.30 18.18 -57.30 -1.04 -12.34 15 18 C -0.59 -5.18 7.50 37.18 0.28 -4.90 15 19 H 0.27 7.20 8.29 -40.82 -0.34 6.86 15 20 H 0.38 6.95 8.45 -40.82 -0.35 6.60 15 21 H 0.06 1.02 7.89 -51.93 -0.41 0.61 15 22 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 23 H 0.12 1.22 8.14 -51.93 -0.42 0.79 15 24 H 0.14 1.37 7.94 -51.93 -0.41 0.95 15 25 H 0.13 1.06 8.14 -51.93 -0.42 0.64 15 26 H 0.12 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.14 1.17 8.12 -51.93 -0.42 0.75 15 LS Contribution 254.94 15.07 3.84 3.84 Total: -1.00 -38.82 254.94 -6.82 -45.64 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -2.83 Total: 3.42 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -0.31 Total: -6.70 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.31 Total: -38.80 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -2.01 Total: -42.87 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 21.43 SS G_CDS: -0.81 Total: 20.62 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -38.82 -6.82 -45.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701971654.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.124 kcal (2) G-P(sol) polarization free energy of solvation -38.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds