Wall clock time and date at job start Mon Mar 30 2020 03:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86794 * 120.00062 * 2 1 4 4 H 1.48502 * 109.47298 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47286 * 300.00522 * 3 2 1 6 6 H 1.48501 * 109.47076 * 60.00310 * 3 2 1 7 7 C 1.40052 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99628 * 180.02562 * 7 2 1 9 9 C 1.46367 * 120.00102 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00175 * 0.02562 * 9 7 2 11 11 N 1.34781 * 119.99756 * 180.02562 * 9 7 2 12 12 C 1.46508 * 119.99915 * 179.97438 * 11 9 7 13 13 C 1.52989 * 109.47140 * 180.02562 * 12 11 9 14 14 C 1.53046 * 113.15245 * 275.37291 * 13 12 11 15 15 S 1.81421 * 89.89146 * 211.85103 * 14 13 12 16 16 O 1.42100 * 112.75626 * 280.47671 * 15 14 13 17 17 O 1.42102 * 112.75037 * 136.72699 * 15 14 13 18 18 C 1.53046 * 113.15293 * 175.00208 * 13 12 11 19 19 H 0.97003 * 119.99799 * 359.97438 * 1 2 3 20 20 H 0.96996 * 120.00209 * 0.02562 * 11 9 7 21 21 H 1.09003 * 109.46841 * 59.99531 * 12 11 9 22 22 H 1.09005 * 109.47044 * 300.00495 * 12 11 9 23 23 H 1.08997 * 112.53000 * 45.18612 * 13 12 11 24 24 H 1.08999 * 113.14496 * 327.11375 * 14 13 12 25 25 H 1.08999 * 113.14487 * 96.59446 * 14 13 12 26 26 H 1.08997 * 113.14353 * 263.40546 * 18 13 12 27 27 H 1.08999 * 113.14822 * 32.88700 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8821 2.3963 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9491 -3.6477 -0.0005 12 6 1.2165 -4.9165 0.0000 13 6 2.2107 -6.0793 0.0005 14 6 2.7019 -6.4517 -1.4003 15 16 2.8539 -8.1839 -0.8828 16 8 4.0390 -8.4335 -0.1395 17 8 2.3590 -9.0936 -1.8558 18 6 1.5362 -7.4476 0.1238 19 1 -0.4850 0.8401 0.0004 20 1 2.9190 -3.6477 -0.0002 21 1 0.5895 -4.9744 -0.8897 22 1 0.5901 -4.9740 0.8903 23 1 3.0214 -5.9353 0.7147 24 1 1.9482 -6.2999 -2.1730 25 1 3.6584 -5.9949 -1.6544 26 1 1.5164 -7.8250 1.1461 27 1 0.5579 -7.4878 -0.3552 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701971654.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:03 Heat of formation + Delta-G solvation = -124.070776 kcal Electronic energy + Delta-G solvation = -14167.947935 eV Core-core repulsion = 11438.484673 eV Total energy + Delta-G solvation = -2729.463262 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.68821 -38.40307 -37.90606 -37.03507 -34.79993 -34.01083 -29.18274 -27.53270 -26.82521 -22.03800 -21.71608 -19.72148 -19.19781 -17.54528 -17.40817 -17.25763 -17.04490 -16.31713 -15.84546 -15.73218 -14.91481 -14.35628 -14.01280 -13.76253 -13.53135 -13.27689 -13.25146 -13.08874 -12.78461 -12.62970 -12.27711 -12.11913 -11.97281 -11.50222 -11.21862 -10.94871 -9.87577 -9.47183 -8.29702 -6.85590 -0.75009 1.11310 1.40607 1.41183 1.58891 2.24721 2.46988 2.77770 2.98843 3.13648 3.46947 3.64098 3.76194 4.01968 4.28077 4.36229 4.55624 4.79641 4.85860 4.99772 5.17277 5.32550 5.87964 6.25071 6.27189 6.87038 7.55762 8.49029 8.67185 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.066529 B = 0.005015 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.769211 B = 5582.129591 C = 5799.939090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.535 3.465 10 O -0.634 6.634 11 N -0.755 5.755 12 C 0.153 3.847 13 C -0.084 4.084 14 C -0.593 4.593 15 S 2.457 3.543 16 O -0.943 6.943 17 O -0.960 6.960 18 C -0.583 4.583 19 H 0.274 0.726 20 H 0.397 0.603 21 H 0.044 0.956 22 H 0.041 0.959 23 H 0.131 0.869 24 H 0.147 0.853 25 H 0.140 0.860 26 H 0.146 0.854 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.795 -12.343 -0.851 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.169 1.169 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.610 4.610 8 H 0.107 0.893 9 C 0.339 3.661 10 O -0.522 6.522 11 N -0.410 5.410 12 C 0.027 3.973 13 C -0.104 4.104 14 C -0.722 4.722 15 S 2.641 3.359 16 O -0.941 6.941 17 O -0.957 6.957 18 C -0.713 4.713 19 H 0.084 0.916 20 H 0.231 0.769 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.149 0.851 24 H 0.165 0.835 25 H 0.158 0.842 26 H 0.165 0.835 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.374 -13.356 -1.073 15.294 hybrid contribution -0.272 1.773 0.226 1.808 sum 7.101 -11.584 -0.847 13.613 Atomic orbital electron populations 1.70197 1.09543 1.28870 1.36612 1.26991 0.95531 1.05041 0.91243 0.84960 0.79377 0.75411 0.78455 1.16918 1.19457 1.19453 1.21485 0.94816 0.90116 1.54581 0.89301 1.18620 0.86834 0.84507 0.76092 1.90555 1.16287 1.88054 1.57257 1.45778 1.09445 1.04650 1.81141 1.20783 0.93712 0.82719 1.00071 1.21710 0.98916 0.93626 0.96186 1.31088 1.11517 1.24935 1.04696 1.06993 0.76211 0.76080 0.76615 1.93667 1.44432 1.85138 1.70838 1.93589 1.80781 1.62659 1.58650 1.30929 1.18185 1.04694 1.17490 0.91601 0.76870 0.93816 0.94097 0.85105 0.83504 0.84160 0.83529 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.03 11.83 21.84 0.26 -49.77 15 2 C 0.03 1.48 5.50 85.30 0.47 1.95 15 3 Si 1.00 40.33 29.56 68.60 2.03 42.36 15 4 H -0.25 -9.13 7.11 99.48 0.71 -8.43 15 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 6 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 7 C -0.57 -31.89 9.54 24.83 0.24 -31.66 15 8 H 0.09 4.40 7.85 -2.91 -0.02 4.37 15 9 C 0.54 30.43 7.75 86.36 0.67 31.10 15 10 O -0.63 -42.02 15.02 -4.30 -0.06 -42.09 15 11 N -0.76 -31.93 5.55 -467.40 -2.59 -34.52 15 12 C 0.15 5.31 5.45 86.37 0.47 5.78 15 13 C -0.08 -1.79 3.42 -10.77 -0.04 -1.83 15 14 C -0.59 -10.18 7.49 72.00 0.54 -9.64 15 15 S 2.46 38.40 7.55 -56.49 -0.43 37.97 15 16 O -0.94 -20.31 18.18 -127.88 -2.32 -22.63 15 17 O -0.96 -21.45 18.18 -127.88 -2.32 -23.78 15 18 C -0.58 -8.85 7.50 72.00 0.54 -8.31 15 19 H 0.27 15.05 8.29 -92.71 -0.77 14.28 15 20 H 0.40 14.03 8.45 -92.71 -0.78 13.25 15 21 H 0.04 1.62 7.89 -2.39 -0.02 1.60 15 22 H 0.04 1.54 8.14 -2.38 -0.02 1.52 15 23 H 0.13 2.42 8.14 -2.39 -0.02 2.40 15 24 H 0.15 2.54 7.94 -2.39 -0.02 2.52 15 25 H 0.14 2.01 8.14 -2.39 -0.02 1.99 15 26 H 0.15 1.64 8.14 -2.39 -0.02 1.62 15 27 H 0.15 2.16 8.12 -2.39 -0.02 2.14 15 Total: -1.00 -85.28 254.94 -2.15 -87.43 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.41 Total: 17.65 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 2.89 Total: -12.62 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -2.34 Total: -84.29 kcal Atomic # 8 Polarization: -83.79 SS G_CDS: -4.71 Total: -88.50 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Atomic # 16 Polarization: 38.40 SS G_CDS: -0.43 Total: 37.97 kcal Total: -85.28 -2.15 -87.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701971654.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.643 kcal (2) G-P(sol) polarization free energy of solvation -85.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds