Wall clock time and date at job start Mon Mar 30 2020 03:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46362 * 2 1 4 4 C 1.50697 * 109.46992 * 119.99733 * 2 1 3 5 5 H 1.08000 * 119.99543 * 120.00794 * 4 2 1 6 6 C 1.37878 * 120.00211 * 300.00496 * 4 2 1 7 7 N 1.31510 * 120.00117 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47382 * 89.99883 * 8 6 4 10 10 H 1.48492 * 109.47266 * 209.99811 * 8 6 4 11 11 H 1.48500 * 109.47131 * 330.00214 * 8 6 4 12 12 N 1.46893 * 109.47175 * 240.00102 * 2 1 3 13 13 C 1.46770 * 110.99984 * 181.01847 * 12 2 1 14 14 C 1.50689 * 110.03438 * 174.42809 * 13 12 2 15 15 C 1.38613 * 118.77027 * 163.33827 * 14 13 12 16 16 C 1.38065 * 120.28612 * 179.97438 * 15 14 13 17 17 C 1.38256 * 119.88006 * 359.65463 * 16 15 14 18 18 C 1.38065 * 119.88407 * 0.23220 * 17 16 15 19 19 C 1.37915 * 121.39883 * 343.05863 * 14 13 12 20 20 C 1.50693 * 121.39684 * 0.30973 * 19 14 13 21 21 N 1.45654 * 111.00426 * 303.94987 * 12 2 1 22 22 H 1.08996 * 109.47354 * 60.00380 * 1 2 3 23 23 H 1.09004 * 109.46551 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47567 * 299.99357 * 1 2 3 25 25 H 0.96995 * 120.00067 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.37659 * 54.25322 * 13 12 2 27 27 H 1.09006 * 109.37464 * 294.59767 * 13 12 2 28 28 H 1.08004 * 119.86031 * 359.57524 * 15 14 13 29 29 H 1.07998 * 120.06279 * 179.82460 * 16 15 14 30 30 H 1.08003 * 120.06137 * 180.25155 * 17 16 15 31 31 H 1.08002 * 119.85832 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.38045 * 103.11689 * 20 19 14 33 33 H 1.09004 * 109.37765 * 222.89231 * 20 19 14 34 34 H 1.00902 * 110.99422 * 41.61963 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6534 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5438 4.4120 10 1 1.3444 -0.9490 5.1122 11 1 2.4881 -2.5652 3.7122 12 7 2.0197 -0.6924 -1.1994 13 6 3.4867 -0.7331 -1.2212 14 6 3.9629 -1.5633 -2.3851 15 6 5.2828 -1.4469 -2.7919 16 6 5.7525 -2.1931 -3.8543 17 6 4.9048 -3.0657 -4.5112 18 6 3.5904 -3.1842 -4.1054 19 6 3.1168 -2.4324 -3.0416 20 6 1.6755 -2.5864 -2.6295 21 7 1.4778 -2.0420 -1.2809 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 0.7094 1.1617 3.4844 26 1 3.8501 -1.1713 -0.2917 27 1 3.8752 0.2808 -1.3172 28 1 5.9452 -0.7647 -2.2796 29 1 6.7808 -2.0974 -4.1700 30 1 5.2701 -3.6539 -5.3401 31 1 2.9287 -3.8663 -4.6186 32 1 1.0388 -2.0501 -3.3331 33 1 1.4092 -3.6434 -2.6338 34 1 0.5019 -2.0557 -1.0249 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706336492.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:26 Heat of formation + Delta-G solvation = 62.015938 kcal Electronic energy + Delta-G solvation = -16279.127804 eV Core-core repulsion = 13791.674768 eV Total energy + Delta-G solvation = -2487.453037 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.43280 -36.73420 -33.65174 -32.30560 -31.23766 -29.74130 -28.35198 -25.19257 -24.03888 -23.90677 -21.84644 -20.21536 -18.90882 -16.65004 -16.13284 -15.90210 -14.75839 -14.55852 -14.29042 -14.08091 -13.80063 -13.00874 -12.80270 -12.62276 -12.13613 -11.88588 -11.70491 -11.41249 -10.99241 -10.90140 -10.71358 -10.55807 -10.24934 -10.14502 -9.94417 -9.46983 -8.83995 -8.49824 -8.40866 -8.07127 -6.74165 -5.96856 -4.09057 1.66634 1.71450 3.29351 3.36557 3.41855 4.06946 4.33819 4.42990 5.08347 5.16696 5.21421 5.26579 5.32567 5.61904 5.73726 5.90565 5.98854 6.14538 6.28315 6.33176 6.39993 6.68464 6.70443 6.74993 6.83028 6.90723 7.03017 7.06618 7.31701 7.40173 7.57128 7.75118 8.06245 8.22268 8.24317 8.50657 9.01265 9.57846 11.02446 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.034965 B = 0.007323 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.606991 B = 3822.822437 C = 4161.206544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.196 3.804 3 H 0.048 0.952 4 C -0.528 4.528 5 H 0.065 0.935 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.890 3.110 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.377 5.377 13 C 0.093 3.907 14 C -0.054 4.054 15 C -0.124 4.124 16 C -0.127 4.127 17 C -0.134 4.134 18 C -0.122 4.122 19 C -0.067 4.067 20 C 0.099 3.901 21 N -0.534 5.534 22 H 0.014 0.986 23 H 0.028 0.972 24 H 0.090 0.910 25 H 0.260 0.740 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -5.235 -10.789 12.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.090 3.910 3 H 0.066 0.934 4 C -0.567 4.567 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.531 5.531 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.192 5.192 13 C -0.036 4.036 14 C -0.054 4.054 15 C -0.142 4.142 16 C -0.145 4.145 17 C -0.152 4.152 18 C -0.141 4.141 19 C -0.068 4.068 20 C -0.031 4.031 21 N -0.259 5.259 22 H 0.033 0.967 23 H 0.047 0.953 24 H 0.109 0.891 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.649 -5.138 -10.779 12.814 hybrid contribution -0.034 -0.424 1.141 1.218 sum 4.616 -5.562 -9.638 12.047 Atomic orbital electron populations 1.21825 0.97726 0.99034 1.00768 1.19513 0.92494 0.94026 0.84991 0.93445 1.21674 1.31461 1.12613 0.90935 0.91721 1.24932 0.94974 0.94892 0.98987 1.69866 1.36826 1.22970 1.23458 0.86620 0.78516 0.80247 0.82784 1.20826 1.21333 1.19933 1.66252 1.05811 1.05918 1.41237 1.20964 0.89873 0.97942 0.94795 1.19893 0.93050 0.96077 0.96401 1.21044 0.95275 1.00362 0.97558 1.20966 0.99311 0.97495 0.96732 1.20923 0.94005 0.99803 1.00485 1.20960 0.95831 0.99945 0.97330 1.19607 0.95847 0.96033 0.95321 1.20812 0.92129 0.99009 0.91169 1.63760 1.23572 1.16371 1.22150 0.96730 0.95293 0.89124 0.92962 0.91049 0.90200 0.86274 0.86640 0.86709 0.86590 0.94168 0.90187 0.82664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.77 37.16 0.33 -2.84 16 2 C 0.20 4.83 2.49 -68.87 -0.17 4.66 16 3 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 4 C -0.53 -14.08 7.40 -34.44 -0.25 -14.34 16 5 H 0.06 1.79 6.62 -52.49 -0.35 1.44 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.27 16 8 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.38 -8.19 4.97 -109.33 -0.54 -8.73 16 13 C 0.09 1.90 5.38 -5.05 -0.03 1.87 16 14 C -0.05 -0.97 5.83 -104.61 -0.61 -1.58 16 15 C -0.12 -1.92 9.67 -39.51 -0.38 -2.30 16 16 C -0.13 -1.72 10.05 -39.64 -0.40 -2.12 16 17 C -0.13 -1.76 10.05 -39.64 -0.40 -2.16 16 18 C -0.12 -1.75 9.67 -39.51 -0.38 -2.13 16 19 C -0.07 -1.15 5.82 -104.61 -0.61 -1.76 16 20 C 0.10 1.66 6.68 -5.05 -0.03 1.63 16 21 N -0.53 -10.76 6.56 -11.49 -0.08 -10.84 16 22 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.03 0.64 6.19 -51.93 -0.32 0.32 16 24 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.07 1.61 6.22 -51.93 -0.32 1.29 16 27 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.35 7.00 6.21 -174.44 -1.08 5.91 16 LS Contribution 273.38 15.07 4.12 4.12 Total: -1.00 -28.34 273.38 -9.26 -37.60 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.33 Total: 5.27 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -3.04 Total: -19.44 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.01 Total: -43.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.34 -9.26 -37.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706336492.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.617 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds