Wall clock time and date at job start Mon Mar 30 2020 03:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46362 * 2 1 4 4 C 1.50697 * 109.46992 * 119.99733 * 2 1 3 5 5 H 1.08000 * 119.99543 * 120.00794 * 4 2 1 6 6 C 1.37878 * 120.00211 * 300.00496 * 4 2 1 7 7 N 1.31510 * 120.00117 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47382 * 89.99883 * 8 6 4 10 10 H 1.48492 * 109.47266 * 209.99811 * 8 6 4 11 11 H 1.48500 * 109.47131 * 330.00214 * 8 6 4 12 12 N 1.46893 * 109.47175 * 240.00102 * 2 1 3 13 13 C 1.46770 * 110.99984 * 181.01847 * 12 2 1 14 14 C 1.50689 * 110.03438 * 174.42809 * 13 12 2 15 15 C 1.38613 * 118.77027 * 163.33827 * 14 13 12 16 16 C 1.38065 * 120.28612 * 179.97438 * 15 14 13 17 17 C 1.38256 * 119.88006 * 359.65463 * 16 15 14 18 18 C 1.38065 * 119.88407 * 0.23220 * 17 16 15 19 19 C 1.37915 * 121.39883 * 343.05863 * 14 13 12 20 20 C 1.50693 * 121.39684 * 0.30973 * 19 14 13 21 21 N 1.45654 * 111.00426 * 303.94987 * 12 2 1 22 22 H 1.08996 * 109.47354 * 60.00380 * 1 2 3 23 23 H 1.09004 * 109.46551 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47567 * 299.99357 * 1 2 3 25 25 H 0.96995 * 120.00067 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.37659 * 54.25322 * 13 12 2 27 27 H 1.09006 * 109.37464 * 294.59767 * 13 12 2 28 28 H 1.08004 * 119.86031 * 359.57524 * 15 14 13 29 29 H 1.07998 * 120.06279 * 179.82460 * 16 15 14 30 30 H 1.08003 * 120.06137 * 180.25155 * 17 16 15 31 31 H 1.08002 * 119.85832 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.38045 * 103.11689 * 20 19 14 33 33 H 1.09004 * 109.37765 * 222.89231 * 20 19 14 34 34 H 1.00902 * 110.99422 * 41.61963 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6534 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5438 4.4120 10 1 1.3444 -0.9490 5.1122 11 1 2.4881 -2.5652 3.7122 12 7 2.0197 -0.6924 -1.1994 13 6 3.4867 -0.7331 -1.2212 14 6 3.9629 -1.5633 -2.3851 15 6 5.2828 -1.4469 -2.7919 16 6 5.7525 -2.1931 -3.8543 17 6 4.9048 -3.0657 -4.5112 18 6 3.5904 -3.1842 -4.1054 19 6 3.1168 -2.4324 -3.0416 20 6 1.6755 -2.5864 -2.6295 21 7 1.4778 -2.0420 -1.2809 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 0.7094 1.1617 3.4844 26 1 3.8501 -1.1713 -0.2917 27 1 3.8752 0.2808 -1.3172 28 1 5.9452 -0.7647 -2.2796 29 1 6.7808 -2.0974 -4.1700 30 1 5.2701 -3.6539 -5.3401 31 1 2.9287 -3.8663 -4.6186 32 1 1.0388 -2.0501 -3.3331 33 1 1.4092 -3.6434 -2.6338 34 1 0.5019 -2.0557 -1.0249 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706336492.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:25 Heat of formation + Delta-G solvation = 45.123268 kcal Electronic energy + Delta-G solvation = -16279.860325 eV Core-core repulsion = 13791.674768 eV Total energy + Delta-G solvation = -2488.185558 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.70978 -38.31587 -35.39135 -33.82290 -32.82132 -31.11536 -29.97550 -27.21580 -25.43819 -25.43518 -23.07464 -21.89340 -20.39441 -18.50256 -17.69988 -17.32640 -16.49107 -15.92697 -15.80244 -15.44018 -15.23671 -14.86159 -14.12367 -13.94522 -13.76612 -13.38538 -13.26908 -13.04423 -12.85833 -12.57196 -12.43467 -12.13051 -12.06371 -11.73828 -11.64721 -11.29992 -10.60708 -10.49155 -9.65205 -9.33524 -8.48855 -7.98513 -6.23462 0.53433 0.53947 1.37647 1.39966 1.49849 2.41890 2.72968 2.91528 3.16352 3.82686 3.91972 4.15362 4.16381 4.40619 4.53644 4.66415 4.70694 4.80373 4.80818 4.85860 4.97027 5.01950 5.13538 5.20011 5.20702 5.46900 5.62805 5.65588 5.69747 5.78857 5.83832 6.04547 6.18725 6.26856 6.57347 6.68160 6.99325 7.46219 8.92773 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.034965 B = 0.007323 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.606991 B = 3822.822437 C = 4161.206544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.200 3.800 3 H 0.016 0.984 4 C -0.532 4.532 5 H 0.050 0.950 6 C 0.020 3.980 7 N -0.915 5.915 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.276 1.276 12 N -0.377 5.377 13 C 0.099 3.901 14 C -0.087 4.087 15 C -0.134 4.134 16 C -0.124 4.124 17 C -0.126 4.126 18 C -0.122 4.122 19 C -0.090 4.090 20 C 0.099 3.901 21 N -0.546 5.546 22 H 0.028 0.972 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.262 0.738 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.126 0.874 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.271 -7.002 -12.506 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.093 3.907 3 H 0.033 0.967 4 C -0.571 4.571 5 H 0.068 0.932 6 C -0.180 4.180 7 N -0.555 5.555 8 Si 0.775 3.225 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.201 1.201 12 N -0.191 5.191 13 C -0.030 4.030 14 C -0.088 4.088 15 C -0.153 4.153 16 C -0.142 4.142 17 C -0.144 4.144 18 C -0.140 4.140 19 C -0.091 4.091 20 C -0.030 4.030 21 N -0.271 5.271 22 H 0.047 0.953 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.144 0.856 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.162 0.838 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.557 -6.908 -12.512 15.335 hybrid contribution -0.250 0.088 1.557 1.579 sum 5.307 -6.820 -10.955 13.953 Atomic orbital electron populations 1.21628 0.96809 0.99420 1.00213 1.19294 0.93149 0.92604 0.85689 0.96653 1.21766 1.31149 1.12130 0.92040 0.93161 1.25590 0.95286 0.95605 1.01481 1.69975 1.37590 1.23923 1.23998 0.85702 0.78085 0.78931 0.79743 1.20490 1.20702 1.20118 1.66146 1.06673 1.07253 1.39054 1.20839 0.88968 0.98129 0.95056 1.19807 0.94724 0.97475 0.96747 1.21225 0.94424 1.01105 0.98504 1.21361 1.00964 0.96396 0.95437 1.21409 0.93303 0.98995 1.00646 1.21274 0.96957 0.99502 0.96265 1.19789 0.95731 0.96871 0.96675 1.20956 0.92663 1.00130 0.89297 1.63747 1.23347 1.15030 1.25024 0.95261 0.94367 0.91525 0.92892 0.94289 0.90770 0.85615 0.83479 0.83022 0.83778 0.93595 0.87692 0.82888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.77 71.98 0.63 -5.21 16 2 C 0.20 10.21 2.49 44.17 0.11 10.32 16 3 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 4 C -0.53 -29.24 7.40 25.60 0.19 -29.05 16 5 H 0.05 2.87 6.62 -2.91 -0.02 2.86 16 6 C 0.02 1.09 5.30 84.66 0.45 1.54 16 7 N -0.92 -52.13 11.32 21.45 0.24 -51.88 16 8 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 N -0.38 -16.81 4.97 -499.80 -2.48 -19.29 16 13 C 0.10 4.21 5.38 85.58 0.46 4.67 16 14 C -0.09 -3.13 5.83 -19.85 -0.12 -3.24 16 15 C -0.13 -4.01 9.67 22.32 0.22 -3.79 16 16 C -0.12 -2.93 10.05 22.23 0.22 -2.70 16 17 C -0.13 -2.76 10.05 22.23 0.22 -2.53 16 18 C -0.12 -3.06 9.67 22.32 0.22 -2.84 16 19 C -0.09 -2.93 5.82 -19.85 -0.12 -3.05 16 20 C 0.10 3.18 6.68 85.58 0.57 3.76 16 21 N -0.55 -22.08 6.56 -190.26 -1.25 -23.33 16 22 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.04 1.71 6.19 -2.38 -0.01 1.69 16 24 H 0.07 3.52 6.07 -2.39 -0.01 3.50 16 25 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 26 H 0.04 1.87 6.22 -2.39 -0.01 1.86 16 27 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 28 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 29 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16 34 H 0.35 13.90 6.21 -204.66 -1.27 12.63 16 Total: -1.00 -61.88 273.38 1.42 -60.45 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.17 Total: 19.78 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 3.06 Total: -32.13 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -3.49 Total: -94.50 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -61.88 1.42 -60.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706336492.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.577 kcal (2) G-P(sol) polarization free energy of solvation -61.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds