Wall clock time and date at job start Mon Mar 30 2020 03:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.50703 * 109.47431 * 239.99443 * 2 1 3 5 5 H 1.08000 * 120.00235 * 240.00243 * 4 2 1 6 6 C 1.37879 * 119.99551 * 60.00152 * 4 2 1 7 7 N 1.31512 * 119.99868 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99995 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47310 * 89.99802 * 8 6 4 10 10 H 1.48496 * 109.47395 * 209.99950 * 8 6 4 11 11 H 1.48503 * 109.46882 * 330.00080 * 8 6 4 12 12 N 1.46901 * 109.47137 * 119.99612 * 2 1 3 13 13 C 1.46779 * 111.00113 * 298.14580 * 12 2 1 14 14 C 1.50696 * 110.00740 * 174.51407 * 13 12 2 15 15 C 1.38610 * 118.75743 * 163.01909 * 14 13 12 16 16 C 1.38071 * 120.27904 * 179.86006 * 15 14 13 17 17 C 1.38246 * 119.88212 * 359.97371 * 16 15 14 18 18 C 1.38069 * 119.88582 * 0.04744 * 17 16 15 19 19 C 1.37907 * 121.40234 * 342.96002 * 14 13 12 20 20 C 1.50694 * 121.39961 * 0.27724 * 19 14 13 21 21 N 1.45654 * 111.00003 * 61.04744 * 12 2 1 22 22 H 1.08998 * 109.47593 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47429 * 300.00061 * 1 2 3 24 24 H 1.09002 * 109.47253 * 60.00186 * 1 2 3 25 25 H 0.97008 * 119.99647 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.38236 * 54.35051 * 13 12 2 27 27 H 1.08997 * 109.29031 * 294.62385 * 13 12 2 28 28 H 1.07999 * 119.85975 * 359.83713 * 15 14 13 29 29 H 1.08000 * 120.05474 * 179.97438 * 16 15 14 30 30 H 1.08002 * 120.06311 * 180.02562 * 17 16 15 31 31 H 1.07999 * 119.86013 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.37555 * 222.92419 * 20 19 14 33 33 H 1.09004 * 109.28492 * 103.21178 * 20 19 14 34 34 H 1.00901 * 110.99867 * 41.61888 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3428 -2.1619 -4.4118 10 1 2.4866 -0.1417 -5.1122 11 1 3.6293 -1.7585 -3.7120 12 7 2.0196 -0.6924 1.1995 13 6 1.5855 -0.0017 2.4197 14 6 1.9838 -0.8005 3.6338 15 6 1.9920 -0.1747 4.8706 16 6 2.3490 -0.8776 6.0041 17 6 2.6991 -2.2113 5.9058 18 6 2.6917 -2.8356 4.6743 19 6 2.3352 -2.1304 3.5354 20 6 2.3431 -2.8442 2.2083 21 7 1.5729 -2.0786 1.2209 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7081 1.1606 -3.4845 26 1 0.5019 0.1153 2.4031 27 1 2.0547 0.9811 2.4634 28 1 1.7185 0.8672 4.9478 29 1 2.3546 -0.3862 6.9659 30 1 2.9784 -2.7640 6.7906 31 1 2.9649 -3.8776 4.5980 32 1 1.8984 -3.8323 2.3265 33 1 3.3713 -2.9495 1.8622 34 1 1.6439 -2.4955 0.3048 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706336496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:28 Heat of formation + Delta-G solvation = 60.247341 kcal Electronic energy + Delta-G solvation = -16209.861762 eV Core-core repulsion = 13722.332034 eV Total energy + Delta-G solvation = -2487.529729 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.48941 -36.77237 -33.66142 -32.47535 -31.18133 -29.88315 -27.98934 -25.36109 -24.12331 -23.93387 -21.88625 -20.49530 -18.76339 -16.74087 -16.07548 -15.67061 -14.80749 -14.71111 -14.34897 -14.07665 -13.82307 -13.01987 -12.82502 -12.51357 -12.31793 -12.11496 -11.64779 -11.57041 -11.04865 -10.95011 -10.60963 -10.56634 -10.47556 -10.19260 -9.94465 -9.26899 -8.87158 -8.54730 -8.44366 -8.12144 -6.67854 -6.07429 -4.13173 1.62005 1.65835 3.27345 3.34354 3.37344 4.01727 4.28481 4.41852 5.05388 5.11788 5.19284 5.21800 5.26548 5.58838 5.68603 5.88944 6.02692 6.08842 6.19150 6.21405 6.35000 6.39696 6.70303 6.74440 6.80127 6.96436 6.98954 7.11001 7.25978 7.37779 7.65457 7.76056 7.92526 8.11029 8.48141 8.53670 8.93252 9.52349 10.99203 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.048880 B = 0.006525 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.697654 B = 4289.943395 C = 4669.591675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.204 3.796 3 H 0.046 0.954 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.373 5.373 13 C 0.085 3.915 14 C -0.056 4.056 15 C -0.123 4.123 16 C -0.128 4.128 17 C -0.132 4.132 18 C -0.122 4.122 19 C -0.064 4.064 20 C 0.097 3.903 21 N -0.536 5.536 22 H 0.037 0.963 23 H 0.008 0.992 24 H 0.084 0.916 25 H 0.262 0.738 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.712 -4.425 12.320 13.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.097 3.903 3 H 0.064 0.936 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.189 5.189 13 C -0.044 4.044 14 C -0.056 4.056 15 C -0.142 4.142 16 C -0.146 4.146 17 C -0.150 4.150 18 C -0.141 4.141 19 C -0.064 4.064 20 C -0.033 4.033 21 N -0.261 5.261 22 H 0.057 0.943 23 H 0.027 0.973 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.628 -4.178 12.543 13.320 hybrid contribution 0.250 -0.460 -1.236 1.342 sum 1.878 -4.639 11.307 12.365 Atomic orbital electron populations 1.22256 0.99818 1.00075 1.00031 1.19502 0.90930 0.94332 0.85521 0.93639 1.20953 1.31188 1.12707 0.89870 0.92369 1.24895 0.94961 0.95024 0.98998 1.69890 1.36451 1.22796 1.23570 0.86501 0.79172 0.79312 0.82438 1.20662 1.21233 1.19938 1.66098 1.54206 0.95819 1.02749 1.21087 0.99125 0.95977 0.88180 1.19766 0.97335 0.93773 0.94769 1.21031 1.01123 0.99856 0.92160 1.20963 1.00929 0.94697 0.98024 1.20941 1.01741 0.95109 0.97174 1.20982 1.01205 0.99628 0.92272 1.19644 0.98153 0.93673 0.94942 1.20820 0.97074 0.95614 0.89818 1.63794 1.52071 0.98213 1.12055 0.94343 0.97290 0.89774 0.92852 0.92643 0.90050 0.86343 0.86590 0.86630 0.86475 0.90113 0.93751 0.81526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 8.51 37.15 0.32 -3.63 16 2 C 0.20 5.07 2.43 -68.87 -0.17 4.91 16 3 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.51 -13.51 7.77 -34.44 -0.27 -13.77 16 5 H 0.06 1.53 6.96 -52.49 -0.37 1.17 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.79 11.32 55.43 0.63 -24.16 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 12 N -0.37 -8.21 4.94 -109.32 -0.54 -8.75 16 13 C 0.09 1.65 5.38 -5.04 -0.03 1.63 16 14 C -0.06 -0.98 5.82 -104.61 -0.61 -1.58 16 15 C -0.12 -1.83 9.67 -39.51 -0.38 -2.21 16 16 C -0.13 -1.67 10.05 -39.64 -0.40 -2.07 16 17 C -0.13 -1.68 10.05 -39.64 -0.40 -2.08 16 18 C -0.12 -1.72 9.67 -39.50 -0.38 -2.10 16 19 C -0.06 -1.07 5.83 -104.61 -0.61 -1.68 16 20 C 0.10 1.65 6.68 -5.05 -0.03 1.62 16 21 N -0.54 -10.87 6.14 -11.49 -0.07 -10.94 16 22 H 0.04 0.93 7.60 -51.93 -0.39 0.53 16 23 H 0.01 0.19 6.32 -51.93 -0.33 -0.14 16 24 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.06 1.12 6.07 -51.93 -0.31 0.80 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.36 7.65 6.82 -174.44 -1.19 6.46 16 LS Contribution 273.37 15.07 4.12 4.12 Total: -1.00 -28.22 273.37 -9.36 -37.58 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.43 Total: 5.70 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -3.05 Total: -19.37 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.02 Total: -43.85 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.22 -9.36 -37.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706336496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.827 kcal (2) G-P(sol) polarization free energy of solvation -28.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds