Wall clock time and date at job start Mon Mar 30 2020 03:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.50703 * 109.47431 * 239.99443 * 2 1 3 5 5 H 1.08000 * 120.00235 * 240.00243 * 4 2 1 6 6 C 1.37879 * 119.99551 * 60.00152 * 4 2 1 7 7 N 1.31512 * 119.99868 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99995 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47310 * 89.99802 * 8 6 4 10 10 H 1.48496 * 109.47395 * 209.99950 * 8 6 4 11 11 H 1.48503 * 109.46882 * 330.00080 * 8 6 4 12 12 N 1.46901 * 109.47137 * 119.99612 * 2 1 3 13 13 C 1.46779 * 111.00113 * 298.14580 * 12 2 1 14 14 C 1.50696 * 110.00740 * 174.51407 * 13 12 2 15 15 C 1.38610 * 118.75743 * 163.01909 * 14 13 12 16 16 C 1.38071 * 120.27904 * 179.86006 * 15 14 13 17 17 C 1.38246 * 119.88212 * 359.97371 * 16 15 14 18 18 C 1.38069 * 119.88582 * 0.04744 * 17 16 15 19 19 C 1.37907 * 121.40234 * 342.96002 * 14 13 12 20 20 C 1.50694 * 121.39961 * 0.27724 * 19 14 13 21 21 N 1.45654 * 111.00003 * 61.04744 * 12 2 1 22 22 H 1.08998 * 109.47593 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47429 * 300.00061 * 1 2 3 24 24 H 1.09002 * 109.47253 * 60.00186 * 1 2 3 25 25 H 0.97008 * 119.99647 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.38236 * 54.35051 * 13 12 2 27 27 H 1.08997 * 109.29031 * 294.62385 * 13 12 2 28 28 H 1.07999 * 119.85975 * 359.83713 * 15 14 13 29 29 H 1.08000 * 120.05474 * 179.97438 * 16 15 14 30 30 H 1.08002 * 120.06311 * 180.02562 * 17 16 15 31 31 H 1.07999 * 119.86013 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.37555 * 222.92419 * 20 19 14 33 33 H 1.09004 * 109.28492 * 103.21178 * 20 19 14 34 34 H 1.00901 * 110.99867 * 41.61888 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3428 -2.1619 -4.4118 10 1 2.4866 -0.1417 -5.1122 11 1 3.6293 -1.7585 -3.7120 12 7 2.0196 -0.6924 1.1995 13 6 1.5855 -0.0017 2.4197 14 6 1.9838 -0.8005 3.6338 15 6 1.9920 -0.1747 4.8706 16 6 2.3490 -0.8776 6.0041 17 6 2.6991 -2.2113 5.9058 18 6 2.6917 -2.8356 4.6743 19 6 2.3352 -2.1304 3.5354 20 6 2.3431 -2.8442 2.2083 21 7 1.5729 -2.0786 1.2209 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7081 1.1606 -3.4845 26 1 0.5019 0.1153 2.4031 27 1 2.0547 0.9811 2.4634 28 1 1.7185 0.8672 4.9478 29 1 2.3546 -0.3862 6.9659 30 1 2.9784 -2.7640 6.7906 31 1 2.9649 -3.8776 4.5980 32 1 1.8984 -3.8323 2.3265 33 1 3.3713 -2.9495 1.8622 34 1 1.6439 -2.4955 0.3048 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706336496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:27 Heat of formation + Delta-G solvation = 43.559811 kcal Electronic energy + Delta-G solvation = -16210.585388 eV Core-core repulsion = 13722.332034 eV Total energy + Delta-G solvation = -2488.253354 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73892 -38.34130 -35.39471 -34.01093 -32.67767 -31.22334 -29.64273 -27.35921 -25.62357 -25.37347 -23.06755 -22.17288 -20.18777 -18.48202 -17.71036 -17.12307 -16.47109 -16.12465 -15.75286 -15.49023 -15.19597 -14.70198 -14.17020 -14.04670 -13.90182 -13.65518 -13.17709 -12.95969 -12.85169 -12.65433 -12.37196 -12.19073 -12.07826 -11.87076 -11.65160 -11.03142 -10.68183 -10.51133 -9.65907 -9.35220 -8.34897 -8.13387 -6.25963 0.52136 0.52555 1.43525 1.44283 1.54354 2.40957 2.72201 2.90079 3.17680 3.80855 3.90484 4.13880 4.15499 4.39539 4.51515 4.58593 4.70519 4.73655 4.76030 4.82284 4.91743 4.97219 5.12678 5.17886 5.19450 5.42876 5.60677 5.64420 5.66491 5.76855 5.80893 6.08401 6.17691 6.18720 6.61939 6.71754 6.96064 7.43602 8.92925 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.048880 B = 0.006525 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.697654 B = 4289.943395 C = 4669.591675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.209 3.791 3 H 0.013 0.987 4 C -0.520 4.520 5 H 0.056 0.944 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.383 5.383 13 C 0.089 3.911 14 C -0.087 4.087 15 C -0.131 4.131 16 C -0.124 4.124 17 C -0.125 4.125 18 C -0.123 4.123 19 C -0.088 4.088 20 C 0.097 3.903 21 N -0.542 5.542 22 H 0.034 0.966 23 H 0.020 0.980 24 H 0.060 0.940 25 H 0.263 0.737 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.149 0.851 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.107 0.893 33 H 0.039 0.961 34 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 -5.936 14.167 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.102 3.898 3 H 0.031 0.969 4 C -0.558 4.558 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.198 5.198 13 C -0.040 4.040 14 C -0.088 4.088 15 C -0.149 4.149 16 C -0.142 4.142 17 C -0.142 4.142 18 C -0.142 4.142 19 C -0.089 4.089 20 C -0.033 4.033 21 N -0.266 5.266 22 H 0.053 0.947 23 H 0.039 0.961 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.148 0.852 29 H 0.167 0.833 30 H 0.169 0.831 31 H 0.160 0.840 32 H 0.124 0.876 33 H 0.057 0.943 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.348 -5.693 14.418 15.678 hybrid contribution 0.048 -0.004 -1.667 1.667 sum 2.396 -5.697 12.751 14.170 Atomic orbital electron populations 1.22036 0.99604 0.99450 0.99360 1.19234 0.90899 0.92897 0.86790 0.96897 1.21192 1.31166 1.12712 0.90779 0.92542 1.25676 0.95107 0.95681 1.01855 1.70018 1.37388 1.24018 1.24188 0.85467 0.78711 0.78180 0.78688 1.19953 1.21099 1.19519 1.65959 1.54382 0.96875 1.02572 1.21039 0.98245 0.96331 0.88380 1.19726 0.99980 0.94362 0.94697 1.21235 1.01107 1.00711 0.91864 1.21378 0.99226 0.94970 0.98616 1.21412 0.99800 0.95161 0.97864 1.21268 1.00347 1.00752 0.91787 1.19771 0.99767 0.93749 0.95609 1.20955 0.96609 0.96362 0.89357 1.63815 1.53169 0.97421 1.12164 0.94729 0.96081 0.92169 0.92826 0.94063 0.90286 0.85183 0.83348 0.83072 0.84009 0.87554 0.94261 0.82521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.30 8.51 71.98 0.61 -6.68 16 2 C 0.21 10.82 2.43 44.17 0.11 10.93 16 3 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.52 -28.24 7.77 25.60 0.20 -28.04 16 5 H 0.06 3.02 6.96 -2.91 -0.02 3.00 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -52.34 11.32 21.45 0.24 -52.09 16 8 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 N -0.38 -17.29 4.94 -499.77 -2.47 -19.76 16 13 C 0.09 3.53 5.38 85.58 0.46 3.99 16 14 C -0.09 -2.99 5.82 -19.86 -0.12 -3.11 16 15 C -0.13 -3.65 9.67 22.32 0.22 -3.43 16 16 C -0.12 -2.77 10.05 22.23 0.22 -2.55 16 17 C -0.12 -2.65 10.05 22.23 0.22 -2.43 16 18 C -0.12 -3.07 9.67 22.32 0.22 -2.86 16 19 C -0.09 -2.85 5.83 -19.85 -0.12 -2.96 16 20 C 0.10 3.22 6.68 85.58 0.57 3.79 16 21 N -0.54 -22.17 6.14 -190.26 -1.17 -23.34 16 22 H 0.03 1.71 7.60 -2.39 -0.02 1.69 16 23 H 0.02 0.96 6.32 -2.39 -0.02 0.94 16 24 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 25 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 26 H 0.04 1.72 6.07 -2.39 -0.01 1.71 16 27 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 28 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 29 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 30 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.35 15.19 6.82 -204.66 -1.40 13.80 16 Total: -1.00 -61.44 273.37 1.38 -60.06 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -0.30 Total: 22.00 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 3.05 Total: -32.02 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -3.39 Total: -95.19 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -61.44 1.38 -60.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706336496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.619 kcal (2) G-P(sol) polarization free energy of solvation -61.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds