Wall clock time and date at job start Mon Mar 30 2020 03:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 113.03173 * 2 1 4 4 C 1.53932 * 113.75773 * 228.27899 * 2 1 3 5 5 C 1.53940 * 86.33863 * 221.96214 * 4 2 1 6 6 N 1.47955 * 113.75917 * 131.71594 * 2 1 3 7 7 C 1.39855 * 111.00412 * 251.89995 * 6 2 1 8 8 C 1.39597 * 119.83664 * 299.13526 * 7 6 2 9 9 C 1.38060 * 120.54879 * 179.75941 * 8 7 6 10 10 C 1.38735 * 120.21958 * 0.51155 * 9 8 7 11 11 N 1.38866 * 120.16321 * 179.76998 * 10 9 8 12 12 C 1.41565 * 119.67245 * 359.74451 * 10 9 8 13 13 C 1.41021 * 120.26363 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00722 * 26.08914 * 13 12 10 15 15 C 1.39890 * 120.00010 * 206.08731 * 13 12 10 16 16 N 1.30904 * 119.99899 * 16.36035 * 15 13 12 17 17 Si 1.86800 * 120.00256 * 196.36392 * 15 13 12 18 18 H 1.48495 * 109.47072 * 59.99875 * 17 15 13 19 19 H 1.48503 * 109.46887 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47126 * 299.99603 * 17 15 13 21 21 C 1.38009 * 119.84067 * 119.40525 * 7 6 2 22 22 H 1.08998 * 109.47130 * 172.22095 * 1 2 3 23 23 H 1.09004 * 109.46661 * 292.21853 * 1 2 3 24 24 H 1.08999 * 109.47045 * 52.21558 * 1 2 3 25 25 H 1.08996 * 113.73502 * 107.60439 * 4 2 1 26 26 H 1.09004 * 113.72944 * 336.31408 * 4 2 1 27 27 H 1.09005 * 113.75559 * 138.03865 * 5 4 2 28 28 H 1.08993 * 113.75666 * 269.28929 * 5 4 2 29 29 H 1.08000 * 119.72851 * 359.97438 * 8 7 6 30 30 H 1.07999 * 119.88902 * 180.23580 * 9 8 7 31 31 H 0.97002 * 119.99863 * 186.02207 * 11 10 9 32 32 H 0.96996 * 119.99853 * 6.01297 * 11 10 9 33 33 H 0.96994 * 120.00202 * 184.97736 * 16 15 13 34 34 H 1.08001 * 120.11633 * 0.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9565 1.0031 0.0000 4 6 2.1502 -0.9376 -1.0516 5 6 3.1561 -1.3382 0.0427 6 7 2.1261 -0.9011 1.0108 7 6 2.6993 -0.1713 2.0571 8 6 3.7425 0.7181 1.7936 9 6 4.3158 1.4496 2.8145 10 6 3.8664 1.2998 4.1185 11 7 4.4470 2.0326 5.1452 12 6 2.8126 0.3964 4.3971 13 6 2.3457 0.2347 5.7179 14 1 2.4547 1.0380 6.4315 15 6 1.7413 -0.9664 6.1040 16 7 1.8879 -2.0390 5.3681 17 14 0.7250 -1.0396 7.6696 18 1 -0.4073 -0.0841 7.5699 19 1 0.1965 -2.4153 7.8528 20 1 1.5774 -0.6777 8.8305 21 6 2.2347 -0.3381 3.3459 22 1 -0.3633 -1.0182 -0.1391 23 1 -0.3633 0.3886 0.9514 24 1 -0.3633 0.6296 -0.8122 25 1 2.6031 -0.4141 -1.8935 26 1 1.4905 -1.7490 -1.3592 27 1 3.3653 -2.4074 0.0767 28 1 4.0590 -0.7277 0.0538 29 1 4.1018 0.8376 0.7822 30 1 5.1197 2.1375 2.5980 31 1 4.1925 1.8635 6.0659 32 1 5.1072 2.7135 4.9418 33 1 1.4110 -2.8523 5.5958 34 1 1.4307 -1.0306 3.5467 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706913385.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:44 Heat of formation + Delta-G solvation = 56.386413 kcal Electronic energy + Delta-G solvation = -16202.881422 eV Core-core repulsion = 13715.184270 eV Total energy + Delta-G solvation = -2487.697151 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.89390 -37.25252 -33.52876 -33.01942 -29.93598 -29.47531 -28.68864 -25.59026 -24.55804 -22.92621 -21.28446 -20.04684 -18.73224 -17.20796 -16.09003 -15.54115 -15.35834 -14.73341 -14.28752 -14.13127 -13.06361 -12.96574 -12.68035 -12.41257 -11.98995 -11.72880 -11.53602 -11.28530 -11.23523 -11.03407 -10.80313 -10.56501 -10.44606 -10.10077 -9.74709 -9.55036 -9.05007 -8.98809 -7.96213 -7.34954 -6.66492 -6.17291 -4.10656 2.82388 3.11416 3.13877 3.15419 3.25201 4.03406 4.57936 4.68018 4.98904 5.25713 5.31475 5.68386 5.77047 5.82188 5.96151 5.98451 6.17979 6.18763 6.24710 6.38530 6.43985 6.49030 6.71429 7.00309 7.05569 7.14086 7.26291 7.57601 7.60838 7.72396 8.02158 8.17660 8.36688 8.67898 8.87074 8.91180 9.12408 9.18936 10.35939 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.024804 B = 0.008819 C = 0.007174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.601878 B = 3174.374896 C = 3902.109908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.030 3.970 3 H 0.076 0.924 4 C -0.146 4.146 5 C 0.002 3.998 6 N -0.428 5.428 7 C 0.017 3.983 8 C -0.219 4.219 9 C -0.173 4.173 10 C 0.115 3.885 11 N -0.885 5.885 12 C 0.065 3.935 13 C -0.466 4.466 14 H 0.071 0.929 15 C 0.076 3.924 16 N -0.796 5.796 17 Si 0.901 3.099 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.269 1.269 21 C -0.104 4.104 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.391 0.609 32 H 0.376 0.624 33 H 0.279 0.721 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.149 2.618 -6.200 6.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.078 4.078 3 H 0.094 0.906 4 C -0.184 4.184 5 C -0.126 4.126 6 N -0.148 5.148 7 C -0.078 4.078 8 C -0.241 4.241 9 C -0.197 4.197 10 C 0.013 3.987 11 N -0.426 5.426 12 C 0.060 3.940 13 C -0.497 4.497 14 H 0.089 0.911 15 C -0.140 4.140 16 N -0.423 5.423 17 Si 0.726 3.274 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.193 1.193 21 C -0.125 4.125 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.220 0.780 32 H 0.201 0.799 33 H 0.090 0.910 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.614 1.800 -5.873 6.174 hybrid contribution 0.375 0.722 0.728 1.092 sum -0.239 2.522 -5.145 5.735 Atomic orbital electron populations 1.21538 0.94158 1.01541 1.01342 1.23497 0.96209 0.95971 0.92075 0.90610 1.23461 0.98776 0.99575 0.96551 1.23932 0.95094 1.01569 0.91996 1.66316 1.19127 1.26166 1.03222 1.18924 0.98129 0.98011 0.92769 1.20439 1.03264 1.03619 0.96777 1.19824 1.03187 1.04624 0.92075 1.17999 0.94914 0.98134 0.87615 1.41910 1.49577 1.43723 1.07428 1.17193 0.90366 0.92625 0.93824 1.19077 1.35719 0.98896 0.95989 0.91098 1.25743 0.95291 0.94739 0.98240 1.69842 1.33348 1.01039 1.38058 0.86496 0.80734 0.77957 0.82209 1.19158 1.20497 1.19337 1.20841 1.00961 1.02029 0.88670 0.92393 0.92275 0.93007 0.92015 0.89780 0.90327 0.90804 0.89456 0.89614 0.78018 0.79887 0.91036 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.99 37.16 0.37 -1.64 16 2 C 0.03 0.53 3.77 -66.66 -0.25 0.28 16 3 H 0.08 1.37 7.14 -51.93 -0.37 1.00 16 4 C -0.15 -2.16 7.85 -25.80 -0.20 -2.36 16 5 C 0.00 0.04 7.72 -2.77 -0.02 0.02 16 6 N -0.43 -8.99 6.07 -167.41 -1.02 -10.01 16 7 C 0.02 0.40 5.16 -83.77 -0.43 -0.03 16 8 C -0.22 -4.96 7.90 -39.14 -0.31 -5.27 16 9 C -0.17 -3.93 9.87 -39.46 -0.39 -4.32 16 10 C 0.11 2.76 6.79 -83.22 -0.56 2.20 16 11 N -0.88 -17.83 8.97 32.75 0.29 -17.54 16 12 C 0.07 1.74 5.57 -106.66 -0.59 1.15 16 13 C -0.47 -12.27 8.44 -37.91 -0.32 -12.59 16 14 H 0.07 1.76 6.79 -52.49 -0.36 1.41 16 15 C 0.08 1.95 5.16 -17.33 -0.09 1.86 16 16 N -0.80 -21.27 10.97 55.55 0.61 -20.66 16 17 Si 0.90 19.09 29.59 -169.99 -5.03 14.06 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 C -0.10 -2.77 8.58 -38.75 -0.33 -3.10 16 22 H 0.06 0.88 8.02 -51.93 -0.42 0.46 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.31 5.67 -51.93 -0.29 1.02 16 29 H 0.09 1.78 6.23 -52.49 -0.33 1.45 16 30 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 31 H 0.39 7.75 7.11 -40.82 -0.29 7.46 16 32 H 0.38 6.35 8.84 -40.82 -0.36 5.98 16 33 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 34 H 0.12 3.54 6.22 -52.49 -0.33 3.22 16 LS Contribution 276.65 15.07 4.17 4.17 Total: -1.00 -28.40 276.65 -8.52 -36.92 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -4.41 Total: 16.87 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -3.14 Total: -23.80 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.11 Total: -48.21 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.40 -8.52 -36.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706913385.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.302 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds