Wall clock time and date at job start Mon Mar 30 2020 03:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 112.74234 * 2 1 4 4 C 1.53515 * 113.47729 * 130.84472 * 2 1 3 5 5 C 1.53511 * 83.57014 * 88.74553 * 4 2 1 6 6 N 1.47480 * 113.47644 * 229.23186 * 2 1 3 7 7 C 1.39848 * 111.00009 * 23.93220 * 6 2 1 8 8 C 1.39600 * 119.84115 * 56.96748 * 7 6 2 9 9 C 1.38057 * 120.55207 * 180.30287 * 8 7 6 10 10 C 1.38739 * 120.21893 * 359.72426 * 9 8 7 11 11 N 1.38866 * 120.16668 * 179.97438 * 10 9 8 12 12 C 1.41561 * 119.67432 * 359.97438 * 10 9 8 13 13 C 1.41023 * 120.26923 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00388 * 334.14272 * 13 12 10 15 15 C 1.39890 * 119.99847 * 154.14247 * 13 12 10 16 16 N 1.30899 * 120.00219 * 342.59850 * 15 13 12 17 17 Si 1.86807 * 119.99713 * 162.59302 * 15 13 12 18 18 H 1.48501 * 109.46749 * 90.00264 * 17 15 13 19 19 H 1.48498 * 109.47264 * 209.99782 * 17 15 13 20 20 H 1.48495 * 109.47224 * 330.00269 * 17 15 13 21 21 C 1.38001 * 119.83965 * 236.71415 * 7 6 2 22 22 H 1.08999 * 109.47213 * 180.64308 * 1 2 3 23 23 H 1.09007 * 109.46732 * 300.63901 * 1 2 3 24 24 H 1.08998 * 109.47312 * 60.63995 * 1 2 3 25 25 H 1.09005 * 114.16588 * 202.38600 * 4 2 1 26 26 H 1.08994 * 114.17290 * 334.90651 * 4 2 1 27 27 H 1.08997 * 113.47694 * 271.25330 * 5 4 2 28 28 H 1.08999 * 113.47591 * 140.79019 * 5 4 2 29 29 H 1.08001 * 119.72593 * 0.04409 * 8 7 6 30 30 H 1.07997 * 119.89138 * 179.69993 * 9 8 7 31 31 H 0.96994 * 120.00482 * 185.34501 * 11 10 9 32 32 H 0.97001 * 119.99324 * 5.33858 * 11 10 9 33 33 H 0.96997 * 119.99538 * 185.04818 * 16 15 13 34 34 H 1.08002 * 120.11592 * 359.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9514 1.0053 0.0000 4 6 2.1416 -0.9209 1.0652 5 6 2.0425 -1.9802 -0.0415 6 7 2.1175 -0.8833 -1.0245 7 6 1.2226 -1.0928 -2.0785 8 6 0.7120 -0.0015 -2.7836 9 6 -0.1771 -0.1910 -3.8226 10 6 -0.5690 -1.4727 -4.1813 11 7 -1.4638 -1.6620 -5.2262 12 6 -0.0522 -2.5865 -3.4768 13 6 -0.4415 -3.8947 -3.8312 14 1 -1.3935 -4.0631 -4.3128 15 6 0.4053 -4.9744 -3.5590 16 7 1.6710 -4.7644 -3.2996 17 14 -0.2703 -6.7161 -3.5658 18 1 -0.1515 -7.2877 -4.9312 19 1 0.5025 -7.5505 -2.6109 20 1 -1.6988 -6.6945 -3.1607 21 6 0.8526 -2.3777 -2.4200 22 1 -0.3633 -1.0276 0.0115 23 1 -0.3633 0.5238 0.8843 24 1 -0.3634 0.5038 -0.8956 25 1 3.1628 -0.6625 1.3454 26 1 1.4934 -1.1042 1.9221 27 1 1.0893 -2.5087 -0.0525 28 1 2.8989 -2.6535 -0.0760 29 1 1.0118 0.9997 -2.5113 30 1 -0.5692 0.6612 -4.3576 31 1 -1.7961 -2.5513 -5.4251 32 1 -1.7566 -0.9048 -5.7571 33 1 2.2733 -5.5157 -3.1832 34 1 1.2531 -3.2199 -1.8753 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706913386.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:46 Heat of formation + Delta-G solvation = 41.857070 kcal Electronic energy + Delta-G solvation = -16510.476369 eV Core-core repulsion = 14022.149178 eV Total energy + Delta-G solvation = -2488.327191 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.90311 -38.99223 -35.43556 -34.67653 -31.64815 -30.98761 -29.99650 -27.59615 -26.17956 -24.99642 -22.76758 -21.85670 -19.78297 -18.79272 -17.83839 -17.26652 -16.93749 -16.77680 -16.41428 -15.45457 -14.78631 -14.44632 -14.21623 -13.62340 -13.55031 -13.33543 -13.21269 -12.99571 -12.88661 -12.71241 -12.45571 -12.14607 -12.01561 -11.68462 -11.36529 -11.15474 -11.00998 -10.86119 -9.76637 -9.21419 -8.52623 -7.77185 -6.03587 1.05443 1.30819 1.38520 1.48905 1.54127 2.23441 2.81180 3.28511 3.55491 3.66313 3.84790 4.07020 4.35232 4.41058 4.42079 4.59760 4.76896 4.77841 4.81865 4.93762 5.00338 5.12169 5.19645 5.23880 5.36979 5.48923 5.49925 5.71181 5.88894 5.99343 6.18210 6.41780 6.48334 6.86061 6.94970 7.03437 7.34491 7.56830 8.47431 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.023587 B = 0.010267 C = 0.007786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.819154 B = 2726.649629 C = 3595.444732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.030 3.970 3 H 0.098 0.902 4 C -0.123 4.123 5 C 0.003 3.997 6 N -0.448 5.448 7 C 0.037 3.963 8 C -0.193 4.193 9 C -0.178 4.178 10 C 0.098 3.902 11 N -0.875 5.875 12 C 0.039 3.961 13 C -0.493 4.493 14 H 0.076 0.924 15 C 0.033 3.967 16 N -0.836 5.836 17 Si 0.974 3.026 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.184 4.184 22 H 0.035 0.965 23 H 0.085 0.915 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.392 0.608 32 H 0.393 0.607 33 H 0.280 0.720 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 4.428 5.560 7.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.077 4.077 3 H 0.116 0.884 4 C -0.160 4.160 5 C -0.126 4.126 6 N -0.165 5.165 7 C -0.060 4.060 8 C -0.214 4.214 9 C -0.202 4.202 10 C -0.005 4.005 11 N -0.418 5.418 12 C 0.033 3.967 13 C -0.525 4.525 14 H 0.094 0.906 15 C -0.180 4.180 16 N -0.464 5.464 17 Si 0.796 3.204 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.206 4.206 22 H 0.054 0.946 23 H 0.103 0.897 24 H 0.080 0.920 25 H 0.123 0.877 26 H 0.113 0.887 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.220 0.780 32 H 0.221 0.779 33 H 0.090 0.910 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.698 4.495 5.396 7.225 hybrid contribution -0.900 -1.251 -0.520 1.626 sum -2.598 3.245 4.876 6.407 Atomic orbital electron populations 1.22028 0.94526 1.01457 1.02988 1.23260 0.94562 0.98684 0.91197 0.88352 1.23192 1.02660 0.94386 0.95773 1.23670 1.00847 0.95408 0.92626 1.66484 1.38290 1.08584 1.03147 1.19046 0.96081 0.93692 0.97218 1.19992 1.04342 0.95990 1.01119 1.20168 1.04212 0.94247 1.01547 1.18130 0.96872 0.93258 0.92238 1.41763 1.52311 1.11352 1.36381 1.17479 0.94404 0.92382 0.92406 1.19366 1.04252 0.91547 1.37287 0.90623 1.26587 0.94327 1.04926 0.92111 1.69940 1.04624 1.34522 1.37322 0.85327 0.79370 0.76841 0.78900 1.19008 1.19889 1.18304 1.20982 1.04503 0.94453 1.00694 0.94577 0.89665 0.92018 0.87743 0.88663 0.92510 0.91417 0.87686 0.86690 0.77991 0.77928 0.90953 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 8.33 71.98 0.60 -4.26 16 2 C 0.03 0.97 4.30 42.18 0.18 1.16 16 3 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 4 C -0.12 -3.39 8.06 30.94 0.25 -3.14 16 5 C 0.00 0.11 6.15 83.57 0.51 0.62 16 6 N -0.45 -18.65 6.50 -700.96 -4.56 -23.21 16 7 C 0.04 1.74 4.24 38.13 0.16 1.91 16 8 C -0.19 -8.63 7.18 22.56 0.16 -8.47 16 9 C -0.18 -7.87 9.87 22.35 0.22 -7.65 16 10 C 0.10 4.67 6.79 38.97 0.26 4.94 16 11 N -0.88 -34.63 8.97 -50.31 -0.45 -35.08 16 12 C 0.04 2.09 5.57 -21.18 -0.12 1.97 16 13 C -0.49 -26.36 8.52 23.35 0.20 -26.16 16 14 H 0.08 3.80 6.64 -2.91 -0.02 3.78 16 15 C 0.03 1.71 5.13 85.23 0.44 2.15 16 16 N -0.84 -45.60 11.02 21.82 0.24 -45.36 16 17 Si 0.97 39.26 29.60 68.60 2.03 41.30 16 18 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 21 C -0.18 -9.85 7.31 22.81 0.17 -9.68 16 22 H 0.04 1.31 6.81 -2.39 -0.02 1.29 16 23 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 24 H 0.06 2.16 5.84 -2.39 -0.01 2.14 16 25 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 26 H 0.09 2.19 8.11 -2.39 -0.02 2.17 16 27 H 0.06 2.37 5.90 -2.39 -0.01 2.35 16 28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.11 4.25 7.83 -2.91 -0.02 4.23 16 30 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.39 15.30 7.04 -92.71 -0.65 14.65 16 32 H 0.39 12.72 8.84 -92.71 -0.82 11.90 16 33 H 0.28 14.07 8.30 -92.71 -0.77 13.30 16 34 H 0.11 5.95 4.75 -2.91 -0.01 5.93 16 Total: -1.00 -61.97 269.54 -0.04 -62.01 By element: Atomic # 1 Polarization: 47.31 SS G_CDS: -0.34 Total: 46.97 kcal Atomic # 6 Polarization: -49.66 SS G_CDS: 3.04 Total: -46.63 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -4.77 Total: -103.65 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.30 kcal Total: -61.97 -0.04 -62.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706913386.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.869 kcal (2) G-P(sol) polarization free energy of solvation -61.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds