Wall clock time and date at job start Mon Mar 30 2020 03:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99719 * 359.71484 * 7 2 1 10 10 O 1.42094 * 106.40490 * 293.82249 * 9 7 2 11 11 O 1.42107 * 106.39987 * 66.74063 * 9 7 2 12 12 N 1.65600 * 107.21803 * 180.27922 * 9 7 2 13 13 C 1.46496 * 119.99973 * 65.00263 * 12 9 7 14 14 H 1.08999 * 109.97436 * 24.29778 * 13 12 9 15 15 C 1.54280 * 109.98560 * 145.57050 * 13 12 9 16 16 C 1.54978 * 103.75213 * 142.46975 * 15 13 12 17 17 C 1.54884 * 102.33637 * 322.91600 * 16 15 13 18 18 C 1.51453 * 109.98331 * 263.02740 * 13 12 9 19 19 O 1.20751 * 126.34111 * 60.98880 * 18 13 12 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 0.97002 * 119.99822 * 245.00468 * 12 9 7 22 22 H 1.09000 * 110.57085 * 261.04186 * 15 13 12 23 23 H 1.09003 * 110.57069 * 23.90416 * 15 13 12 24 24 H 1.08997 * 110.83643 * 81.12706 * 16 15 13 25 25 H 1.09005 * 110.83324 * 204.50416 * 16 15 13 26 26 H 1.09001 * 110.44266 * 156.35969 * 17 16 15 27 27 H 1.08998 * 110.44586 * 278.76264 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7199 0.0064 10 8 0.4516 -2.7897 1.2564 11 8 0.4514 -2.8008 -1.2430 12 7 2.2485 -3.9353 0.0117 13 6 3.1396 -4.1035 1.1623 14 1 2.6813 -3.6757 2.0539 15 6 3.4331 -5.6013 1.3873 16 6 4.9209 -5.6242 1.8204 17 6 5.5387 -4.5086 0.9414 18 6 4.4690 -3.4309 0.8901 19 8 4.6453 -2.2563 0.6722 20 1 -0.4850 0.8400 0.0004 21 1 2.3173 -4.5357 -0.7470 22 1 2.7979 -6.0016 2.1775 23 1 3.2947 -6.1619 0.4627 24 1 5.0203 -5.3834 2.8788 25 1 5.3739 -6.5909 1.6004 26 1 6.4475 -4.1207 1.4015 27 1 5.7505 -4.8856 -0.0591 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715942136.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:57 Heat of formation + Delta-G solvation = -134.377604 kcal Electronic energy + Delta-G solvation = -15072.704851 eV Core-core repulsion = 12342.794651 eV Total energy + Delta-G solvation = -2729.910200 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54586 -36.24984 -35.16504 -33.92990 -33.12502 -32.79004 -27.55590 -26.00870 -25.93264 -21.13628 -19.22383 -18.89015 -17.62529 -16.34426 -16.06605 -15.90575 -14.85662 -14.71576 -13.89999 -13.77006 -13.43623 -13.30822 -12.76742 -12.28135 -11.92417 -11.35261 -11.23402 -11.08254 -11.02365 -10.79825 -10.50502 -10.36048 -10.26926 -10.17762 -10.07841 -9.10439 -8.58953 -8.37239 -6.57425 -5.15488 2.10310 2.48316 3.20576 3.22324 3.32007 4.17963 4.30605 4.48923 4.74568 4.79881 4.87241 4.99219 5.40035 5.42428 5.50844 5.72242 5.76628 5.85992 5.95771 6.08884 6.15290 6.48200 6.77080 7.46925 7.74204 7.84890 8.37035 9.08588 10.36987 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.031562 B = 0.011170 C = 0.008919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.915972 B = 2506.048980 C = 3138.443712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.134 3.866 3 Si 0.922 3.078 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.264 1.264 7 C -1.020 5.020 8 H 0.125 0.875 9 S 2.706 3.294 10 O -1.006 7.006 11 O -1.005 7.005 12 N -1.120 6.120 13 C 0.099 3.901 14 H 0.119 0.881 15 C -0.124 4.124 16 C -0.119 4.119 17 C -0.183 4.183 18 C 0.344 3.656 19 O -0.408 6.408 20 H 0.289 0.711 21 H 0.404 0.596 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.075 -9.952 2.903 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.083 4.083 3 Si 0.746 3.254 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.189 1.189 7 C -1.154 5.154 8 H 0.143 0.857 9 S 2.807 3.193 10 O -0.996 6.996 11 O -0.996 6.996 12 N -0.873 5.873 13 C -0.010 4.010 14 H 0.136 0.864 15 C -0.163 4.163 16 C -0.157 4.157 17 C -0.221 4.221 18 C 0.214 3.786 19 O -0.276 6.276 20 H 0.099 0.901 21 H 0.235 0.765 22 H 0.101 0.899 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.009 -9.240 2.952 13.239 hybrid contribution 0.997 0.872 -0.353 1.371 sum 10.007 -8.369 2.599 13.301 Atomic orbital electron populations 1.69911 1.06801 1.30588 1.41024 1.24726 0.94313 1.00786 0.88445 0.86190 0.79728 0.79587 0.79901 1.18976 1.20453 1.18883 1.30852 1.07807 1.10911 1.65869 0.85671 1.00702 0.72138 0.73550 0.72938 1.93352 1.72835 1.87495 1.45930 1.93375 1.73061 1.87571 1.45564 1.56052 1.54146 1.51339 1.25787 1.21786 0.90635 0.96929 0.91677 0.86376 1.22611 0.96406 0.94515 1.02788 1.22397 0.95319 0.98328 0.99687 1.22910 0.99411 0.97324 1.02481 1.25568 0.92779 0.89017 0.71277 1.90434 1.85826 1.17708 1.33663 0.90100 0.76457 0.89901 0.90171 0.90579 0.90372 0.89295 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.94 13.19 55.43 0.73 -25.21 15 2 C 0.13 3.93 5.46 -17.82 -0.10 3.83 15 3 Si 0.92 22.11 29.54 -169.99 -5.02 17.09 15 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.26 -6.21 7.11 56.52 0.40 -5.81 15 7 C -1.02 -29.45 9.63 30.60 0.29 -29.16 15 8 H 0.13 3.46 4.74 -52.49 -0.25 3.21 15 9 S 2.71 73.05 5.00 -107.50 -0.54 72.51 15 10 O -1.01 -29.57 17.38 -57.17 -0.99 -30.56 15 11 O -1.01 -29.93 18.02 -57.17 -1.03 -30.96 15 12 N -1.12 -21.88 5.51 -4.99 -0.03 -21.91 15 13 C 0.10 1.64 3.49 -68.04 -0.24 1.40 15 14 H 0.12 2.12 7.54 -51.93 -0.39 1.73 15 15 C -0.12 -1.38 6.57 -25.02 -0.16 -1.55 15 16 C -0.12 -1.05 6.95 -24.69 -0.17 -1.22 15 17 C -0.18 -1.98 6.72 -26.28 -0.18 -2.16 15 18 C 0.34 5.67 7.50 -28.06 -0.21 5.46 15 19 O -0.41 -8.58 15.06 6.01 0.09 -8.49 15 20 H 0.29 7.94 8.31 -40.82 -0.34 7.60 15 21 H 0.40 6.59 8.63 -34.47 -0.30 6.29 15 22 H 0.08 0.85 8.14 -51.93 -0.42 0.42 15 23 H 0.08 0.79 7.82 -51.93 -0.41 0.38 15 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 15 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 15 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.10 0.96 8.14 -51.93 -0.42 0.54 15 LS Contribution 249.10 15.07 3.75 3.75 Total: -1.00 -37.40 249.10 -6.39 -43.79 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -2.59 Total: 3.37 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -0.76 Total: -23.39 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.70 Total: -47.12 kcal Atomic # 8 Polarization: -68.08 SS G_CDS: -1.93 Total: -70.02 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 73.05 SS G_CDS: -0.54 Total: 72.51 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -37.40 -6.39 -43.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715942136.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.588 kcal (2) G-P(sol) polarization free energy of solvation -37.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds