Wall clock time and date at job start Mon Mar 30 2020 03:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99719 * 359.71484 * 7 2 1 10 10 O 1.42094 * 106.40490 * 293.82249 * 9 7 2 11 11 O 1.42107 * 106.39987 * 66.74063 * 9 7 2 12 12 N 1.65600 * 107.21803 * 180.27922 * 9 7 2 13 13 C 1.46496 * 119.99973 * 65.00263 * 12 9 7 14 14 H 1.08999 * 109.97436 * 24.29778 * 13 12 9 15 15 C 1.54280 * 109.98560 * 145.57050 * 13 12 9 16 16 C 1.54978 * 103.75213 * 142.46975 * 15 13 12 17 17 C 1.54884 * 102.33637 * 322.91600 * 16 15 13 18 18 C 1.51453 * 109.98331 * 263.02740 * 13 12 9 19 19 O 1.20751 * 126.34111 * 60.98880 * 18 13 12 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 0.97002 * 119.99822 * 245.00468 * 12 9 7 22 22 H 1.09000 * 110.57085 * 261.04186 * 15 13 12 23 23 H 1.09003 * 110.57069 * 23.90416 * 15 13 12 24 24 H 1.08997 * 110.83643 * 81.12706 * 16 15 13 25 25 H 1.09005 * 110.83324 * 204.50416 * 16 15 13 26 26 H 1.09001 * 110.44266 * 156.35969 * 17 16 15 27 27 H 1.08998 * 110.44586 * 278.76264 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7199 0.0064 10 8 0.4516 -2.7897 1.2564 11 8 0.4514 -2.8008 -1.2430 12 7 2.2485 -3.9353 0.0117 13 6 3.1396 -4.1035 1.1623 14 1 2.6813 -3.6757 2.0539 15 6 3.4331 -5.6013 1.3873 16 6 4.9209 -5.6242 1.8204 17 6 5.5387 -4.5086 0.9414 18 6 4.4690 -3.4309 0.8901 19 8 4.6453 -2.2563 0.6722 20 1 -0.4850 0.8400 0.0004 21 1 2.3173 -4.5357 -0.7470 22 1 2.7979 -6.0016 2.1775 23 1 3.2947 -6.1619 0.4627 24 1 5.0203 -5.3834 2.8788 25 1 5.3739 -6.5909 1.6004 26 1 6.4475 -4.1207 1.4015 27 1 5.7505 -4.8856 -0.0591 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715942136.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:57 Heat of formation + Delta-G solvation = -166.053259 kcal Electronic energy + Delta-G solvation = -15074.078410 eV Core-core repulsion = 12342.794651 eV Total energy + Delta-G solvation = -2731.283759 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.81801 -37.60061 -37.34276 -36.19343 -35.18212 -34.30489 -28.59828 -28.19903 -27.17358 -22.11490 -20.95585 -20.48768 -19.55751 -18.23027 -17.74673 -17.17631 -16.74421 -16.17047 -15.92765 -15.57049 -14.82600 -14.50753 -14.01798 -13.93961 -13.42032 -13.12692 -13.04008 -12.65995 -12.57524 -12.46531 -12.34301 -12.11270 -11.93670 -11.73464 -11.52377 -11.24710 -10.70534 -9.80131 -8.74905 -7.42731 0.25713 0.98018 1.28866 1.31320 1.44799 2.20381 2.57724 2.91591 3.22444 3.58075 3.69162 3.81419 4.17569 4.32140 4.40157 4.45936 4.67376 4.73063 4.98394 5.12800 5.22097 5.25856 5.34757 5.44647 6.02590 6.28187 6.62494 6.88998 8.21612 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.031562 B = 0.011170 C = 0.008919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.915972 B = 2506.048980 C = 3138.443712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.983 3.017 4 H -0.256 1.256 5 H -0.258 1.258 6 H -0.258 1.258 7 C -1.045 5.045 8 H 0.133 0.867 9 S 2.716 3.284 10 O -1.040 7.040 11 O -1.042 7.042 12 N -1.104 6.104 13 C 0.078 3.922 14 H 0.094 0.906 15 C -0.116 4.116 16 C -0.106 4.106 17 C -0.170 4.170 18 C 0.336 3.664 19 O -0.465 6.465 20 H 0.297 0.703 21 H 0.421 0.579 22 H 0.093 0.907 23 H 0.099 0.901 24 H 0.084 0.916 25 H 0.116 0.884 26 H 0.105 0.895 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.379 -11.236 3.167 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.802 3.198 4 H -0.180 1.180 5 H -0.182 1.182 6 H -0.182 1.182 7 C -1.179 5.179 8 H 0.150 0.850 9 S 2.817 3.183 10 O -1.030 7.030 11 O -1.032 7.032 12 N -0.864 5.864 13 C -0.031 4.031 14 H 0.112 0.888 15 C -0.155 4.155 16 C -0.144 4.144 17 C -0.207 4.207 18 C 0.210 3.790 19 O -0.337 6.337 20 H 0.107 0.893 21 H 0.256 0.744 22 H 0.112 0.888 23 H 0.118 0.882 24 H 0.103 0.897 25 H 0.134 0.866 26 H 0.124 0.876 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.305 -10.564 3.214 15.803 hybrid contribution 0.301 1.151 -0.402 1.256 sum 11.607 -9.413 2.812 15.206 Atomic orbital electron populations 1.69985 1.08472 1.32128 1.42184 1.25890 0.95248 1.05034 0.87702 0.85270 0.78816 0.75307 0.80364 1.17970 1.18164 1.18212 1.31281 1.08506 1.12397 1.65696 0.84972 0.99989 0.72572 0.74062 0.71632 1.93300 1.74409 1.88210 1.47041 1.93311 1.74835 1.88337 1.46751 1.55314 1.53676 1.49743 1.27671 1.22334 0.90142 1.01216 0.89381 0.88824 1.22672 0.98581 0.89981 1.04294 1.22460 0.92910 0.99265 0.99742 1.22929 0.97823 0.95491 1.04493 1.26321 0.94442 0.89166 0.69093 1.90392 1.86704 1.20292 1.36307 0.89252 0.74376 0.88842 0.88239 0.89705 0.86567 0.87634 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.79 13.19 21.45 0.28 -55.51 15 2 C 0.07 4.37 5.46 84.65 0.46 4.83 15 3 Si 0.98 45.38 29.54 68.60 2.03 47.41 15 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 15 5 H -0.26 -10.87 7.11 99.48 0.71 -10.16 15 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 7 C -1.05 -61.83 9.63 67.73 0.65 -61.18 15 8 H 0.13 7.49 4.74 -2.91 -0.01 7.48 15 9 S 2.72 150.90 5.00 -56.49 -0.28 150.61 15 10 O -1.04 -63.30 17.38 -128.00 -2.22 -65.53 15 11 O -1.04 -63.90 18.02 -128.00 -2.31 -66.21 15 12 N -1.10 -43.13 5.51 -169.70 -0.93 -44.07 15 13 C 0.08 2.51 3.49 44.92 0.16 2.67 15 14 H 0.09 3.45 7.54 -2.39 -0.02 3.43 15 15 C -0.12 -2.20 6.57 31.70 0.21 -1.99 15 16 C -0.11 -1.35 6.95 31.91 0.22 -1.13 15 17 C -0.17 -3.02 6.72 30.89 0.21 -2.81 15 18 C 0.34 10.72 7.50 29.74 0.22 10.94 15 19 O -0.46 -19.69 15.06 -1.42 -0.02 -19.71 15 20 H 0.30 16.68 8.31 -92.71 -0.77 15.91 15 21 H 0.42 13.38 8.63 -96.74 -0.83 12.54 15 22 H 0.09 1.62 8.14 -2.39 -0.02 1.60 15 23 H 0.10 1.54 7.82 -2.39 -0.02 1.52 15 24 H 0.08 0.98 8.14 -2.39 -0.02 0.96 15 25 H 0.12 0.76 8.14 -2.38 -0.02 0.74 15 26 H 0.11 1.62 8.14 -2.39 -0.02 1.60 15 27 H 0.13 1.76 8.14 -2.39 -0.02 1.74 15 Total: -1.00 -84.76 249.10 -0.96 -85.72 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.37 Total: 15.94 kcal Atomic # 6 Polarization: -50.80 SS G_CDS: 2.13 Total: -48.66 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -0.65 Total: -99.57 kcal Atomic # 8 Polarization: -146.89 SS G_CDS: -4.55 Total: -151.45 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 150.90 SS G_CDS: -0.28 Total: 150.61 kcal Total: -84.76 -0.96 -85.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715942136.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.329 kcal (2) G-P(sol) polarization free energy of solvation -84.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds