Wall clock time and date at job start Mon Mar 30 2020 03:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00063 * 180.02562 * 7 2 1 10 10 O 1.42103 * 106.40095 * 293.53984 * 9 7 2 11 11 O 1.42099 * 106.40263 * 66.45546 * 9 7 2 12 12 N 1.65597 * 107.21810 * 179.97438 * 9 7 2 13 13 C 1.46503 * 119.99741 * 64.99961 * 12 9 7 14 14 H 1.09004 * 109.97248 * 335.18422 * 13 12 9 15 15 C 1.54276 * 109.98435 * 213.86949 * 13 12 9 16 16 C 1.54986 * 103.75062 * 217.53123 * 15 13 12 17 17 C 1.54889 * 102.33376 * 37.08422 * 16 15 13 18 18 C 1.51455 * 109.98336 * 96.45350 * 13 12 9 19 19 O 1.20755 * 126.33907 * 298.96981 * 18 13 12 20 20 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 21 21 H 0.96992 * 120.00301 * 245.00076 * 12 9 7 22 22 H 1.09004 * 110.57071 * 336.09500 * 15 13 12 23 23 H 1.08994 * 110.57076 * 98.96145 * 15 13 12 24 24 H 1.09001 * 110.83081 * 278.87099 * 16 15 13 25 25 H 1.09006 * 111.00503 * 155.37327 * 16 15 13 26 26 H 1.09007 * 110.43945 * 203.63775 * 17 16 15 27 27 H 1.09002 * 110.54575 * 81.16979 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 16 3.7666 -1.1940 0.0001 10 8 4.1683 -0.6487 -1.2491 11 8 4.1674 -0.6503 1.2503 12 7 4.2568 -2.7757 0.0000 13 6 3.9619 -3.6339 -1.1502 14 1 3.0888 -3.2562 -1.6823 15 6 3.7076 -5.0802 -0.6775 16 6 4.3561 -5.9492 -1.7850 17 6 5.6137 -5.1254 -2.1579 18 6 5.1556 -3.6798 -2.0813 19 8 5.6510 -2.7407 -2.6564 20 1 -0.4849 0.8401 -0.0004 21 1 4.7392 -3.1341 0.7613 22 1 4.1912 -5.2600 0.2827 23 1 2.6379 -5.2791 -0.6119 24 1 3.6889 -6.0472 -2.6413 25 1 4.6353 -6.9296 -1.3990 26 1 5.9415 -5.3678 -3.1688 27 1 6.4166 -5.3087 -1.4439 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715942138.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:59 Heat of formation + Delta-G solvation = -150.754244 kcal Electronic energy + Delta-G solvation = -15015.002502 eV Core-core repulsion = 12284.382158 eV Total energy + Delta-G solvation = -2730.620344 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.83633 -37.70099 -37.50580 -36.48991 -35.22451 -34.40555 -28.74521 -28.48079 -27.20441 -22.09759 -21.17303 -20.60432 -19.39018 -18.67995 -17.74185 -17.37084 -16.79664 -16.23205 -15.85795 -15.45074 -14.99078 -14.84685 -14.43676 -14.18020 -13.61592 -13.47881 -13.15390 -12.82316 -12.69251 -12.59519 -12.19052 -12.11478 -11.83433 -11.63908 -11.50545 -11.35400 -11.04517 -9.83272 -8.99681 -7.54912 0.06545 0.94127 1.02828 1.11094 1.20726 1.87253 2.39398 2.54967 3.16394 3.30501 3.53433 3.81425 4.10475 4.23918 4.32919 4.41051 4.58760 4.66977 4.97370 5.08220 5.23273 5.25969 5.35407 5.44228 5.97779 6.20911 6.51184 6.56090 8.17435 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.041827 B = 0.009704 C = 0.009015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.255538 B = 2884.805705 C = 3105.041172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.112 3.888 3 Si 0.819 3.181 4 H -0.239 1.239 5 H -0.233 1.233 6 H -0.219 1.219 7 C -1.034 5.034 8 H 0.114 0.886 9 S 2.685 3.315 10 O -1.020 7.020 11 O -1.031 7.031 12 N -1.094 6.094 13 C 0.079 3.921 14 H 0.095 0.905 15 C -0.117 4.117 16 C -0.107 4.107 17 C -0.170 4.170 18 C 0.337 3.663 19 O -0.470 6.470 20 H 0.292 0.708 21 H 0.425 0.575 22 H 0.102 0.898 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.117 0.883 26 H 0.106 0.894 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.994 -13.779 -1.598 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.105 4.105 3 Si 0.636 3.364 4 H -0.162 1.162 5 H -0.156 1.156 6 H -0.141 1.141 7 C -1.167 5.167 8 H 0.132 0.868 9 S 2.785 3.215 10 O -1.010 7.010 11 O -1.022 7.022 12 N -0.855 5.855 13 C -0.029 4.029 14 H 0.113 0.887 15 C -0.156 4.156 16 C -0.145 4.145 17 C -0.208 4.208 18 C 0.210 3.790 19 O -0.342 6.342 20 H 0.102 0.898 21 H 0.261 0.739 22 H 0.120 0.880 23 H 0.110 0.890 24 H 0.102 0.898 25 H 0.135 0.865 26 H 0.124 0.876 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.552 -12.357 -2.070 14.629 hybrid contribution -0.608 0.716 0.372 1.010 sum 6.944 -11.640 -1.698 13.660 Atomic orbital electron populations 1.69992 1.07216 1.30458 1.40329 1.25074 0.95597 1.01203 0.88671 0.87573 0.82943 0.83286 0.82550 1.16189 1.15593 1.14094 1.30898 1.17521 1.01905 1.66330 0.86818 1.00907 0.76150 0.71943 0.72452 1.93504 1.84572 1.77027 1.45869 1.93376 1.85374 1.77401 1.46003 1.54981 1.73644 1.29899 1.26942 1.22361 0.98185 0.95263 0.87138 0.88731 1.22680 1.03604 0.88555 1.00782 1.22469 0.94650 0.98910 0.98445 1.22940 1.01348 0.90668 1.05828 1.26312 0.83675 0.92063 0.76941 1.90461 1.57088 1.45688 1.40930 0.89783 0.73895 0.87969 0.88981 0.89836 0.86487 0.87608 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.28 13.96 21.45 0.30 -48.98 15 2 C 0.11 6.49 5.47 84.65 0.46 6.96 15 3 Si 0.82 42.16 26.54 68.60 1.82 43.98 15 4 H -0.24 -11.86 7.11 99.48 0.71 -11.16 15 5 H -0.23 -12.60 5.60 99.48 0.56 -12.04 15 6 H -0.22 -9.93 7.11 99.48 0.71 -9.22 15 7 C -1.03 -58.26 10.15 67.73 0.69 -57.57 15 8 H 0.11 6.37 8.06 -2.91 -0.02 6.35 15 9 S 2.69 137.19 4.16 -56.49 -0.23 136.95 15 10 O -1.02 -58.09 15.23 -125.95 -1.92 -60.01 15 11 O -1.03 -55.94 16.83 -128.00 -2.15 -58.10 15 12 N -1.09 -40.47 5.51 -169.68 -0.94 -41.40 15 13 C 0.08 2.50 3.36 44.92 0.15 2.65 15 14 H 0.09 3.41 7.90 -2.38 -0.02 3.39 15 15 C -0.12 -2.23 6.57 31.71 0.21 -2.02 15 16 C -0.11 -1.37 6.95 31.92 0.22 -1.15 15 17 C -0.17 -2.96 6.72 30.86 0.21 -2.75 15 18 C 0.34 10.68 7.50 29.71 0.22 10.90 15 19 O -0.47 -20.11 17.44 -0.92 -0.02 -20.13 15 20 H 0.29 15.26 8.31 -92.71 -0.77 14.49 15 21 H 0.42 12.47 8.62 -96.76 -0.83 11.63 15 22 H 0.10 1.55 7.82 -2.38 -0.02 1.53 15 23 H 0.09 1.68 8.14 -2.39 -0.02 1.66 15 24 H 0.08 1.01 8.14 -2.39 -0.02 0.99 15 25 H 0.12 0.77 8.14 -2.38 -0.02 0.75 15 26 H 0.11 1.59 8.14 -2.38 -0.02 1.57 15 27 H 0.13 1.67 8.14 -2.39 -0.02 1.65 15 Total: -1.00 -78.32 247.61 -0.77 -79.09 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.21 Total: 11.59 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 2.16 Total: -42.99 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -0.64 Total: -90.38 kcal Atomic # 8 Polarization: -134.15 SS G_CDS: -4.09 Total: -138.24 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.82 Total: 43.98 kcal Atomic # 16 Polarization: 137.19 SS G_CDS: -0.23 Total: 136.95 kcal Total: -78.32 -0.77 -79.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715942138.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.661 kcal (2) G-P(sol) polarization free energy of solvation -78.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds