Wall clock time and date at job start Mon Mar 30 2020 03:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99882 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.40416 * 293.54030 * 9 7 2 11 11 O 1.42097 * 106.40207 * 66.46151 * 9 7 2 12 12 N 1.65598 * 107.21820 * 179.97438 * 9 7 2 13 13 C 1.46505 * 120.00090 * 65.00018 * 12 9 7 14 14 C 1.52994 * 119.80807 * 250.23188 * 13 12 9 15 15 C 1.53000 * 60.65303 * 247.68895 * 14 13 12 16 16 H 1.09001 * 119.80943 * 112.31315 * 15 14 13 17 17 C 1.54479 * 118.06608 * 269.59306 * 15 14 13 18 18 O 1.44426 * 104.80548 * 86.82673 * 17 15 14 19 19 C 1.46769 * 105.41761 * 319.29476 * 18 17 15 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 0.96999 * 120.00158 * 244.99586 * 12 9 7 22 22 H 1.09008 * 117.43387 * 355.36545 * 14 13 12 23 23 H 1.08993 * 117.43371 * 140.06586 * 14 13 12 24 24 H 1.08999 * 110.37331 * 205.66346 * 17 15 14 25 25 H 1.09008 * 110.37101 * 327.88492 * 17 15 14 26 26 H 1.09002 * 110.28978 * 282.45921 * 19 18 17 27 27 H 1.09004 * 111.53579 * 159.38225 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7199 0.0005 10 8 0.4510 -2.7950 1.2500 11 8 0.4520 -2.7955 -1.2494 12 7 2.2484 -3.9353 0.0005 13 6 3.1395 -4.1087 1.1504 14 6 4.6275 -3.7796 1.0159 15 6 4.1963 -5.2339 1.2155 16 1 4.3317 -5.9547 0.4091 17 6 4.0876 -5.7679 2.6610 18 8 2.7493 -5.4243 3.0816 19 6 2.5117 -4.0726 2.5614 20 1 -0.4850 -0.8401 -0.0004 21 1 2.3172 -4.5324 -0.7608 22 1 4.9916 -3.4946 0.0287 23 1 5.1091 -3.2796 1.8561 24 1 4.2247 -6.8491 2.6774 25 1 4.8246 -5.2829 3.3011 26 1 3.0178 -3.3340 3.1831 27 1 1.4466 -3.8501 2.4973 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718071513.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:05 Heat of formation + Delta-G solvation = -101.372982 kcal Electronic energy + Delta-G solvation = -15181.694775 eV Core-core repulsion = 12453.215763 eV Total energy + Delta-G solvation = -2728.479012 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.96370 -35.65534 -34.98728 -34.49819 -33.29018 -31.77728 -27.91626 -25.58466 -25.16852 -21.21344 -20.29060 -19.41842 -17.90087 -17.01764 -16.02932 -15.24991 -15.13478 -14.67496 -14.33145 -14.00694 -13.77471 -13.23092 -12.71560 -12.45095 -11.98014 -11.26833 -11.12925 -11.05158 -11.00625 -10.86050 -10.70708 -10.51108 -10.33202 -9.86332 -9.43865 -9.22439 -8.94375 -8.35762 -7.22084 -5.43997 2.00138 3.20381 3.21263 3.42576 3.52338 4.03517 4.18979 4.26263 4.57319 4.66545 4.68889 5.03079 5.13334 5.30828 5.45019 5.60914 5.72396 5.83419 5.99490 6.11439 6.14264 6.46785 6.66135 6.84459 7.53285 7.64613 8.01086 8.57103 10.15901 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.034827 B = 0.010052 C = 0.009091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.788969 B = 2784.728726 C = 3079.172899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.090 3.910 3 Si 1.080 2.920 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.276 1.276 7 C -1.080 5.080 8 H 0.104 0.896 9 S 2.691 3.309 10 O -1.007 7.007 11 O -1.009 7.009 12 N -1.087 6.087 13 C 0.086 3.914 14 C -0.143 4.143 15 C -0.201 4.201 16 H 0.121 0.879 17 C 0.073 3.927 18 O -0.376 6.376 19 C 0.051 3.949 20 H 0.276 0.724 21 H 0.406 0.594 22 H 0.107 0.893 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.139 -6.624 2.843 12.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.128 4.128 3 Si 0.903 3.097 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.201 1.201 7 C -1.215 5.215 8 H 0.122 0.878 9 S 2.794 3.206 10 O -0.997 6.997 11 O -0.999 6.999 12 N -0.839 5.839 13 C -0.006 4.006 14 C -0.183 4.183 15 C -0.221 4.221 16 H 0.139 0.861 17 C -0.004 4.004 18 O -0.295 6.295 19 C -0.026 4.026 20 H 0.088 0.912 21 H 0.238 0.762 22 H 0.126 0.874 23 H 0.120 0.880 24 H 0.111 0.889 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.740 -5.223 3.119 10.648 hybrid contribution 1.140 -1.593 -0.727 2.089 sum 9.879 -6.816 2.392 12.238 Atomic orbital electron populations 1.70861 1.07182 1.31982 1.37189 1.25974 0.95109 1.03913 0.87844 0.83442 0.75314 0.73326 0.77650 1.19597 1.20044 1.20143 1.31370 1.07968 1.12147 1.70005 0.87783 1.01018 0.72550 0.74095 0.72971 1.93303 1.73495 1.87593 1.45285 1.93440 1.73431 1.87790 1.45281 1.55021 1.54014 1.50089 1.24732 1.22011 0.85806 1.04180 0.88578 1.23618 0.95925 0.94625 1.04102 1.24595 1.05582 0.92279 0.99652 0.86059 1.22833 0.85718 1.00622 0.91255 1.89551 1.30780 1.32660 1.76466 1.24282 1.06171 0.83682 0.88426 0.91174 0.76157 0.87416 0.88004 0.88877 0.92021 0.90561 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.36 13.66 55.43 0.76 -24.61 15 2 C 0.09 2.51 5.46 -17.82 -0.10 2.42 15 3 Si 1.08 23.46 29.90 -169.99 -5.08 18.38 15 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 7 C -1.08 -29.02 9.72 30.60 0.30 -28.73 15 8 H 0.10 2.57 7.81 -52.48 -0.41 2.16 15 9 S 2.69 68.92 4.36 -107.50 -0.47 68.45 15 10 O -1.01 -27.43 14.35 -57.17 -0.82 -28.25 15 11 O -1.01 -28.67 17.64 -57.17 -1.01 -29.67 15 12 N -1.09 -21.65 6.15 1.80 0.01 -21.64 15 13 C 0.09 1.53 3.40 -130.26 -0.44 1.09 15 14 C -0.14 -2.04 10.04 -26.73 -0.27 -2.30 15 15 C -0.20 -2.73 7.21 -89.05 -0.64 -3.37 15 16 H 0.12 1.44 8.14 -51.93 -0.42 1.01 15 17 C 0.07 0.95 7.45 37.93 0.28 1.23 15 18 O -0.38 -6.51 11.72 -35.23 -0.41 -6.92 15 19 C 0.05 0.96 7.13 37.93 0.27 1.23 15 20 H 0.28 8.53 6.52 -40.82 -0.27 8.26 15 21 H 0.41 7.01 8.96 -34.47 -0.31 6.71 15 22 H 0.11 1.45 8.14 -51.92 -0.42 1.03 15 23 H 0.10 1.28 8.14 -51.93 -0.42 0.86 15 24 H 0.09 0.99 8.14 -51.93 -0.42 0.56 15 25 H 0.06 0.69 8.14 -51.92 -0.42 0.27 15 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 27 H 0.15 3.23 5.03 -51.93 -0.26 2.97 15 LS Contribution 246.69 15.07 3.72 3.72 Total: -1.00 -33.56 246.69 -6.49 -40.05 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -2.58 Total: 8.95 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: -0.60 Total: -28.44 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.77 Total: -46.25 kcal Atomic # 8 Polarization: -62.61 SS G_CDS: -2.24 Total: -64.85 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.08 Total: 18.38 kcal Atomic # 16 Polarization: 68.92 SS G_CDS: -0.47 Total: 68.45 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -33.56 -6.49 -40.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718071513.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.328 kcal (2) G-P(sol) polarization free energy of solvation -33.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds