Wall clock time and date at job start Mon Mar 30 2020 03:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99882 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.40416 * 293.54030 * 9 7 2 11 11 O 1.42097 * 106.40207 * 66.46151 * 9 7 2 12 12 N 1.65598 * 107.21820 * 179.97438 * 9 7 2 13 13 C 1.46505 * 120.00090 * 65.00018 * 12 9 7 14 14 C 1.52994 * 119.80807 * 250.23188 * 13 12 9 15 15 C 1.53000 * 60.65303 * 247.68895 * 14 13 12 16 16 H 1.09001 * 119.80943 * 112.31315 * 15 14 13 17 17 C 1.54479 * 118.06608 * 269.59306 * 15 14 13 18 18 O 1.44426 * 104.80548 * 86.82673 * 17 15 14 19 19 C 1.46769 * 105.41761 * 319.29476 * 18 17 15 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 0.96999 * 120.00158 * 244.99586 * 12 9 7 22 22 H 1.09008 * 117.43387 * 355.36545 * 14 13 12 23 23 H 1.08993 * 117.43371 * 140.06586 * 14 13 12 24 24 H 1.08999 * 110.37331 * 205.66346 * 17 15 14 25 25 H 1.09008 * 110.37101 * 327.88492 * 17 15 14 26 26 H 1.09002 * 110.28978 * 282.45921 * 19 18 17 27 27 H 1.09004 * 111.53579 * 159.38225 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7199 0.0005 10 8 0.4510 -2.7950 1.2500 11 8 0.4520 -2.7955 -1.2494 12 7 2.2484 -3.9353 0.0005 13 6 3.1395 -4.1087 1.1504 14 6 4.6275 -3.7796 1.0159 15 6 4.1963 -5.2339 1.2155 16 1 4.3317 -5.9547 0.4091 17 6 4.0876 -5.7679 2.6610 18 8 2.7493 -5.4243 3.0816 19 6 2.5117 -4.0726 2.5614 20 1 -0.4850 -0.8401 -0.0004 21 1 2.3172 -4.5324 -0.7608 22 1 4.9916 -3.4946 0.0287 23 1 5.1091 -3.2796 1.8561 24 1 4.2247 -6.8491 2.6774 25 1 4.8246 -5.2829 3.3011 26 1 3.0178 -3.3340 3.1831 27 1 1.4466 -3.8501 2.4973 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718071513.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:05 Heat of formation + Delta-G solvation = -129.691345 kcal Electronic energy + Delta-G solvation = -15182.922751 eV Core-core repulsion = 12453.215763 eV Total energy + Delta-G solvation = -2729.706988 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.19113 -37.75995 -36.62223 -36.31128 -35.37805 -33.24625 -29.17058 -27.71232 -26.36565 -22.41583 -21.63706 -21.42508 -19.74043 -18.56172 -17.76676 -16.90387 -16.51015 -16.30852 -16.00897 -15.67515 -15.26624 -14.75666 -14.30173 -13.99152 -13.35781 -13.10122 -12.98420 -12.93981 -12.75294 -12.56282 -12.14676 -12.00587 -11.96296 -11.32046 -11.17710 -10.75070 -10.63646 -10.01899 -9.39224 -7.62584 0.06809 1.47891 1.51898 1.77413 2.28486 2.36037 2.52558 2.61935 2.96632 3.29984 3.38857 3.57170 3.82411 4.03345 4.09503 4.29655 4.41186 4.74905 4.79576 4.84827 4.98439 5.08451 5.14287 5.42183 5.63742 5.81754 6.14163 6.49240 7.95798 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.034827 B = 0.010052 C = 0.009091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.788969 B = 2784.728726 C = 3079.172899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.036 3.964 3 Si 1.120 2.880 4 H -0.272 1.272 5 H -0.247 1.247 6 H -0.251 1.251 7 C -1.090 5.090 8 H 0.125 0.875 9 S 2.698 3.302 10 O -1.033 7.033 11 O -1.047 7.047 12 N -1.074 6.074 13 C 0.030 3.970 14 C -0.128 4.128 15 C -0.165 4.165 16 H 0.144 0.856 17 C 0.064 3.936 18 O -0.396 6.396 19 C 0.047 3.953 20 H 0.256 0.744 21 H 0.418 0.582 22 H 0.118 0.882 23 H 0.121 0.879 24 H 0.121 0.879 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.404 -6.916 3.063 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.175 4.175 3 Si 0.934 3.066 4 H -0.196 1.196 5 H -0.170 1.170 6 H -0.175 1.175 7 C -1.225 5.225 8 H 0.143 0.857 9 S 2.801 3.199 10 O -1.023 7.023 11 O -1.038 7.038 12 N -0.831 5.831 13 C -0.061 4.061 14 C -0.167 4.167 15 C -0.185 4.185 16 H 0.162 0.838 17 C -0.012 4.012 18 O -0.316 6.316 19 C -0.030 4.030 20 H 0.067 0.933 21 H 0.253 0.747 22 H 0.136 0.864 23 H 0.139 0.861 24 H 0.139 0.861 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.015 -5.556 3.336 13.651 hybrid contribution 0.192 -1.661 -0.751 1.833 sum 12.207 -7.217 2.585 14.414 Atomic orbital electron populations 1.71008 1.08601 1.30736 1.40464 1.27797 0.95030 1.08398 0.86242 0.83057 0.74810 0.68859 0.79876 1.19636 1.17049 1.17509 1.31734 1.09235 1.12737 1.68749 0.85667 1.00487 0.73007 0.74687 0.71743 1.93290 1.74794 1.88165 1.46006 1.93377 1.75063 1.88564 1.46754 1.54366 1.53835 1.48702 1.26149 1.22306 0.86974 1.09827 0.86949 1.23794 0.92174 0.95188 1.05557 1.24818 1.00894 0.92130 1.00708 0.83781 1.23232 0.84191 1.02697 0.91111 1.89524 1.33443 1.31862 1.76743 1.24057 1.04091 0.84881 0.89980 0.93320 0.74730 0.86354 0.86053 0.86060 0.89628 0.89326 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.20 13.66 21.45 0.29 -53.91 15 2 C 0.04 1.98 5.46 84.65 0.46 2.45 15 3 Si 1.12 45.50 29.90 68.60 2.05 47.55 15 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 5 H -0.25 -8.86 7.11 99.48 0.71 -8.15 15 6 H -0.25 -9.15 7.11 99.48 0.71 -8.44 15 7 C -1.09 -58.30 9.72 67.73 0.66 -57.64 15 8 H 0.13 5.95 7.81 -2.91 -0.02 5.93 15 9 S 2.70 141.22 4.36 -56.49 -0.25 140.98 15 10 O -1.03 -58.70 14.35 -128.00 -1.84 -60.54 15 11 O -1.05 -61.42 17.64 -128.00 -2.26 -63.68 15 12 N -1.07 -42.17 6.15 -148.22 -0.91 -43.08 15 13 C 0.03 1.02 3.40 4.61 0.02 1.03 15 14 C -0.13 -3.13 10.04 30.59 0.31 -2.82 15 15 C -0.17 -3.82 7.21 -9.78 -0.07 -3.89 15 16 H 0.14 2.70 8.14 -2.39 -0.02 2.68 15 17 C 0.06 1.41 7.45 72.48 0.54 1.95 15 18 O -0.40 -13.13 11.72 -148.98 -1.75 -14.87 15 19 C 0.05 1.74 7.13 72.48 0.52 2.26 15 20 H 0.26 16.54 6.52 -92.71 -0.60 15.93 15 21 H 0.42 14.06 8.96 -96.75 -0.87 13.19 15 22 H 0.12 2.67 8.14 -2.38 -0.02 2.65 15 23 H 0.12 2.49 8.14 -2.39 -0.02 2.47 15 24 H 0.12 2.01 8.14 -2.39 -0.02 1.99 15 25 H 0.09 1.51 8.14 -2.38 -0.02 1.49 15 26 H 0.09 2.92 8.14 -2.39 -0.02 2.90 15 27 H 0.11 4.88 5.03 -2.38 -0.01 4.87 15 Total: -1.00 -75.21 246.69 -1.73 -76.94 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.50 Total: 27.26 kcal Atomic # 6 Polarization: -59.09 SS G_CDS: 2.43 Total: -56.66 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -0.62 Total: -96.98 kcal Atomic # 8 Polarization: -133.25 SS G_CDS: -5.84 Total: -139.09 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.05 Total: 47.55 kcal Atomic # 16 Polarization: 141.22 SS G_CDS: -0.25 Total: 140.98 kcal Total: -75.21 -1.73 -76.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718071513.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.751 kcal (2) G-P(sol) polarization free energy of solvation -75.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds