Wall clock time and date at job start Mon Mar 30 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99608 * 359.97438 * 7 2 1 10 10 O 1.42094 * 106.40532 * 293.54233 * 9 7 2 11 11 O 1.42100 * 106.40298 * 66.46529 * 9 7 2 12 12 N 1.65608 * 107.21534 * 180.02562 * 9 7 2 13 13 C 1.46498 * 119.99786 * 65.00540 * 12 9 7 14 14 C 1.52994 * 119.81207 * 109.76681 * 13 12 9 15 15 C 1.52997 * 60.65375 * 112.30732 * 14 13 12 16 16 H 1.09007 * 119.80791 * 247.68634 * 15 14 13 17 17 C 1.54483 * 118.06304 * 90.41067 * 15 14 13 18 18 O 1.44423 * 104.80173 * 321.12652 * 17 15 14 19 19 C 1.45917 * 105.86538 * 319.97661 * 18 17 15 20 20 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 21 21 H 0.96997 * 120.00101 * 245.00198 * 12 9 7 22 22 H 1.08997 * 117.43537 * 219.98534 * 14 13 12 23 23 H 1.09003 * 117.43190 * 4.68829 * 14 13 12 24 24 H 1.08997 * 110.36916 * 79.96313 * 17 15 14 25 25 H 1.09001 * 110.37007 * 202.18737 * 17 15 14 26 26 H 1.09002 * 110.59013 * 280.94075 * 19 18 17 27 27 H 1.08994 * 110.84618 * 158.13904 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1236 -2.7199 -0.0005 10 8 0.4519 -2.7955 1.2493 11 8 0.4511 -2.7950 -1.2501 12 7 2.2484 -3.9354 -0.0005 13 6 3.1394 -4.1088 1.1494 14 6 2.9655 -5.3177 2.0708 15 6 4.2191 -5.2128 1.2000 16 1 4.3716 -5.9178 0.3827 17 6 5.4565 -4.5009 1.7903 18 8 4.9205 -3.3846 2.5334 19 6 3.8308 -2.8518 1.7223 20 1 -0.4850 -0.8401 0.0004 21 1 2.3174 -4.5324 -0.7619 22 1 3.0829 -5.1537 3.1420 23 1 2.2198 -6.0610 1.7887 24 1 6.0001 -5.1730 2.4543 25 1 6.1088 -4.1488 0.9911 26 1 4.2214 -2.2323 0.9150 27 1 3.1335 -2.2815 2.3359 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718071515.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:07 Heat of formation + Delta-G solvation = -102.680807 kcal Electronic energy + Delta-G solvation = -15235.576160 eV Core-core repulsion = 12507.040437 eV Total energy + Delta-G solvation = -2728.535723 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.08141 -35.58680 -34.95433 -34.44700 -33.26792 -31.70934 -28.06344 -26.05334 -25.10824 -20.75591 -20.32002 -19.36868 -17.98288 -16.84925 -16.22894 -15.55526 -15.01799 -14.78267 -14.36042 -13.99047 -13.80844 -12.81007 -12.73353 -12.45413 -12.02777 -11.32421 -11.14334 -11.10416 -10.97331 -10.79489 -10.65085 -10.56920 -10.36067 -9.83318 -9.62790 -9.22536 -8.75902 -8.40404 -7.22547 -5.45993 2.01340 3.21658 3.23038 3.39455 3.57131 3.93766 4.09616 4.27576 4.65009 4.72748 4.75786 5.02689 5.09808 5.37199 5.54937 5.62296 5.69922 5.91503 5.98568 6.09433 6.19902 6.29096 6.54428 6.81231 7.52271 7.64309 7.99055 8.56159 10.14903 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.030253 B = 0.011523 C = 0.009167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.293998 B = 2429.416128 C = 3053.801450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.092 3.908 3 Si 1.084 2.916 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.275 1.275 7 C -1.086 5.086 8 H 0.108 0.892 9 S 2.687 3.313 10 O -1.004 7.004 11 O -1.011 7.011 12 N -1.087 6.087 13 C 0.083 3.917 14 C -0.138 4.138 15 C -0.208 4.208 16 H 0.123 0.877 17 C 0.073 3.927 18 O -0.374 6.374 19 C 0.068 3.932 20 H 0.277 0.723 21 H 0.406 0.594 22 H 0.104 0.896 23 H 0.104 0.896 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.823 -7.249 1.962 12.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.127 4.127 3 Si 0.907 3.093 4 H -0.203 1.203 5 H -0.199 1.199 6 H -0.200 1.200 7 C -1.221 5.221 8 H 0.126 0.874 9 S 2.789 3.211 10 O -0.994 6.994 11 O -1.001 7.001 12 N -0.839 5.839 13 C -0.009 4.009 14 C -0.178 4.178 15 C -0.228 4.228 16 H 0.141 0.859 17 C -0.004 4.004 18 O -0.292 6.292 19 C -0.009 4.009 20 H 0.089 0.911 21 H 0.238 0.762 22 H 0.122 0.878 23 H 0.123 0.877 24 H 0.112 0.888 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.700 -5.600 2.308 10.601 hybrid contribution 0.678 -1.878 -0.790 2.147 sum 9.378 -7.478 1.518 12.090 Atomic orbital electron populations 1.70793 1.07242 1.32077 1.37107 1.25956 0.95084 1.03879 0.87773 0.83409 0.74819 0.72937 0.78146 1.20342 1.19867 1.19994 1.31582 1.08000 1.12269 1.70236 0.87434 1.01173 0.72702 0.74241 0.73017 1.93431 1.73052 1.87530 1.45361 1.93441 1.73339 1.87836 1.45492 1.55102 1.53463 1.50893 1.24454 1.21782 0.95847 0.91618 0.91668 1.23305 0.96807 0.99263 0.98383 1.24439 0.91132 1.02649 1.04618 0.85905 1.22843 0.93920 0.87668 0.95945 1.89358 1.49469 1.46884 1.43445 1.23707 0.88052 0.92938 0.96167 0.91091 0.76222 0.87751 0.87742 0.88828 0.91429 0.89188 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.32 13.66 55.43 0.76 -24.56 15 2 C 0.09 2.54 5.46 -17.82 -0.10 2.44 15 3 Si 1.08 23.49 29.90 -169.99 -5.08 18.41 15 4 H -0.28 -5.56 7.11 56.52 0.40 -5.16 15 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 7 C -1.09 -28.71 8.42 30.60 0.26 -28.45 15 8 H 0.11 2.57 5.63 -52.49 -0.30 2.28 15 9 S 2.69 68.95 4.23 -107.50 -0.45 68.50 15 10 O -1.00 -28.25 17.40 -57.17 -0.99 -29.25 15 11 O -1.01 -28.64 17.64 -57.17 -1.01 -29.65 15 12 N -1.09 -21.37 6.15 1.79 0.01 -21.36 15 13 C 0.08 1.47 3.28 -130.26 -0.43 1.04 15 14 C -0.14 -2.09 9.87 -26.74 -0.26 -2.36 15 15 C -0.21 -2.81 7.25 -89.05 -0.65 -3.45 15 16 H 0.12 1.39 8.14 -51.93 -0.42 0.96 15 17 C 0.07 0.94 7.57 37.94 0.29 1.22 15 18 O -0.37 -6.15 11.33 -35.23 -0.40 -6.55 15 19 C 0.07 1.26 5.80 37.93 0.22 1.48 15 20 H 0.28 8.57 6.52 -40.82 -0.27 8.30 15 21 H 0.41 6.81 8.96 -34.48 -0.31 6.50 15 22 H 0.10 1.53 8.06 -51.93 -0.42 1.11 15 23 H 0.10 1.47 8.14 -51.93 -0.42 1.04 15 24 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.09 1.64 6.27 -51.93 -0.33 1.31 15 27 H 0.12 2.34 8.04 -51.93 -0.42 1.92 15 LS Contribution 245.33 15.07 3.70 3.70 Total: -1.00 -33.64 245.33 -6.66 -40.30 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -2.52 Total: 8.53 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: -0.67 Total: -28.08 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.77 Total: -45.92 kcal Atomic # 8 Polarization: -63.04 SS G_CDS: -2.40 Total: -65.44 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.08 Total: 18.41 kcal Atomic # 16 Polarization: 68.95 SS G_CDS: -0.45 Total: 68.50 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -33.64 -6.66 -40.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718071515.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.376 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds