Wall clock time and date at job start Mon Mar 30 2020 03:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99608 * 359.97438 * 7 2 1 10 10 O 1.42094 * 106.40532 * 293.54233 * 9 7 2 11 11 O 1.42100 * 106.40298 * 66.46529 * 9 7 2 12 12 N 1.65608 * 107.21534 * 180.02562 * 9 7 2 13 13 C 1.46498 * 119.99786 * 65.00540 * 12 9 7 14 14 C 1.52994 * 119.81207 * 109.76681 * 13 12 9 15 15 C 1.52997 * 60.65375 * 112.30732 * 14 13 12 16 16 H 1.09007 * 119.80791 * 247.68634 * 15 14 13 17 17 C 1.54483 * 118.06304 * 90.41067 * 15 14 13 18 18 O 1.44423 * 104.80173 * 321.12652 * 17 15 14 19 19 C 1.45917 * 105.86538 * 319.97661 * 18 17 15 20 20 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 21 21 H 0.96997 * 120.00101 * 245.00198 * 12 9 7 22 22 H 1.08997 * 117.43537 * 219.98534 * 14 13 12 23 23 H 1.09003 * 117.43190 * 4.68829 * 14 13 12 24 24 H 1.08997 * 110.36916 * 79.96313 * 17 15 14 25 25 H 1.09001 * 110.37007 * 202.18737 * 17 15 14 26 26 H 1.09002 * 110.59013 * 280.94075 * 19 18 17 27 27 H 1.08994 * 110.84618 * 158.13904 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1236 -2.7199 -0.0005 10 8 0.4519 -2.7955 1.2493 11 8 0.4511 -2.7950 -1.2501 12 7 2.2484 -3.9354 -0.0005 13 6 3.1394 -4.1088 1.1494 14 6 2.9655 -5.3177 2.0708 15 6 4.2191 -5.2128 1.2000 16 1 4.3716 -5.9178 0.3827 17 6 5.4565 -4.5009 1.7903 18 8 4.9205 -3.3846 2.5334 19 6 3.8308 -2.8518 1.7223 20 1 -0.4850 -0.8401 0.0004 21 1 2.3174 -4.5324 -0.7619 22 1 3.0829 -5.1537 3.1420 23 1 2.2198 -6.0610 1.7887 24 1 6.0001 -5.1730 2.4543 25 1 6.1088 -4.1488 0.9911 26 1 4.2214 -2.2323 0.9150 27 1 3.1335 -2.2815 2.3359 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718071515.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:06 Heat of formation + Delta-G solvation = -131.289054 kcal Electronic energy + Delta-G solvation = -15236.816707 eV Core-core repulsion = 12507.040437 eV Total energy + Delta-G solvation = -2729.776270 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.31441 -37.72127 -36.59425 -36.31399 -35.36276 -33.16426 -29.36363 -27.83728 -26.61713 -22.05657 -21.66254 -21.35131 -19.77960 -18.33825 -18.02167 -16.88623 -16.85729 -16.34429 -15.99925 -15.67463 -15.50396 -14.48338 -13.99934 -13.91819 -13.38452 -13.11100 -13.00127 -12.93704 -12.76904 -12.74584 -12.37667 -12.20327 -11.93952 -11.21532 -11.08749 -10.96641 -10.49065 -10.03843 -9.39310 -7.63608 0.06069 1.46907 1.51827 1.74464 2.28009 2.34730 2.50733 2.60364 2.87009 3.31792 3.45934 3.51859 3.87291 3.89993 4.20965 4.35693 4.45087 4.69417 4.74693 4.79866 4.84768 4.95242 5.13481 5.41487 5.61474 5.81656 6.16425 6.48305 7.94897 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.030253 B = 0.011523 C = 0.009167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.293998 B = 2429.416128 C = 3053.801450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.039 3.961 3 Si 1.122 2.878 4 H -0.248 1.248 5 H -0.263 1.263 6 H -0.264 1.264 7 C -1.092 5.092 8 H 0.130 0.870 9 S 2.695 3.305 10 O -1.038 7.038 11 O -1.046 7.046 12 N -1.070 6.070 13 C 0.029 3.971 14 C -0.142 4.142 15 C -0.160 4.160 16 H 0.155 0.845 17 C 0.064 3.936 18 O -0.384 6.384 19 C 0.069 3.931 20 H 0.257 0.743 21 H 0.420 0.580 22 H 0.105 0.895 23 H 0.114 0.886 24 H 0.127 0.873 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.610 -8.080 1.933 15.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.172 4.172 3 Si 0.936 3.064 4 H -0.171 1.171 5 H -0.188 1.188 6 H -0.188 1.188 7 C -1.227 5.227 8 H 0.147 0.853 9 S 2.797 3.203 10 O -1.028 7.028 11 O -1.036 7.036 12 N -0.828 5.828 13 C -0.062 4.062 14 C -0.181 4.181 15 C -0.180 4.180 16 H 0.173 0.827 17 C -0.012 4.012 18 O -0.303 6.303 19 C -0.009 4.009 20 H 0.067 0.933 21 H 0.255 0.745 22 H 0.123 0.877 23 H 0.132 0.868 24 H 0.145 0.855 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.493 -6.472 2.273 13.385 hybrid contribution -0.090 -1.767 -0.735 1.916 sum 11.403 -8.239 1.538 14.152 Atomic orbital electron populations 1.70944 1.08629 1.30802 1.40448 1.27720 0.94999 1.08271 0.86214 0.83046 0.75261 0.69057 0.79000 1.17121 1.18796 1.18833 1.31919 1.09303 1.12652 1.68789 0.85258 1.00577 0.73091 0.74919 0.71702 1.93378 1.74582 1.88232 1.46579 1.93383 1.74933 1.88578 1.46683 1.54367 1.52838 1.49637 1.25949 1.22062 0.98647 0.93008 0.92491 1.23447 0.98501 0.97716 0.98469 1.24674 0.89851 0.99764 1.03721 0.82700 1.23269 0.93772 0.86975 0.97222 1.89346 1.48852 1.48209 1.43845 1.23449 0.88404 0.93403 0.95632 0.93252 0.74476 0.87671 0.86751 0.85507 0.89393 0.89560 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.15 13.66 21.45 0.29 -53.86 15 2 C 0.04 2.14 5.46 84.65 0.46 2.60 15 3 Si 1.12 46.06 29.90 68.60 2.05 48.11 15 4 H -0.25 -8.88 7.11 99.48 0.71 -8.17 15 5 H -0.26 -10.32 7.11 99.48 0.71 -9.61 15 6 H -0.26 -10.31 7.11 99.48 0.71 -9.61 15 7 C -1.09 -57.98 8.42 67.73 0.57 -57.41 15 8 H 0.13 6.09 5.63 -2.91 -0.02 6.07 15 9 S 2.69 140.86 4.23 -56.49 -0.24 140.62 15 10 O -1.04 -60.38 17.40 -128.00 -2.23 -62.61 15 11 O -1.05 -60.74 17.64 -128.00 -2.26 -63.00 15 12 N -1.07 -41.18 6.15 -148.23 -0.91 -42.09 15 13 C 0.03 0.97 3.28 4.62 0.02 0.99 15 14 C -0.14 -3.97 9.87 30.59 0.30 -3.66 15 15 C -0.16 -3.65 7.25 -9.78 -0.07 -3.72 15 16 H 0.16 2.60 8.14 -2.38 -0.02 2.58 15 17 C 0.06 1.34 7.57 72.49 0.55 1.89 15 18 O -0.38 -11.75 11.33 -148.98 -1.69 -13.44 15 19 C 0.07 2.47 5.80 72.48 0.42 2.89 15 20 H 0.26 16.58 6.52 -92.71 -0.60 15.98 15 21 H 0.42 13.47 8.96 -96.74 -0.87 12.60 15 22 H 0.10 2.89 8.06 -2.39 -0.02 2.87 15 23 H 0.11 2.94 8.14 -2.39 -0.02 2.92 15 24 H 0.13 1.92 8.14 -2.39 -0.02 1.90 15 25 H 0.09 1.57 8.14 -2.39 -0.02 1.55 15 26 H 0.09 3.05 6.27 -2.39 -0.01 3.03 15 27 H 0.09 3.57 8.04 -2.39 -0.02 3.55 15 Total: -1.00 -74.78 245.33 -2.23 -77.01 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.50 Total: 25.68 kcal Atomic # 6 Polarization: -58.67 SS G_CDS: 2.25 Total: -56.42 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -0.62 Total: -95.95 kcal Atomic # 8 Polarization: -132.87 SS G_CDS: -6.17 Total: -139.05 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.05 Total: 48.11 kcal Atomic # 16 Polarization: 140.86 SS G_CDS: -0.24 Total: 140.62 kcal Total: -74.78 -2.23 -77.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718071515.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.280 kcal (2) G-P(sol) polarization free energy of solvation -74.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds