Wall clock time and date at job start Mon Mar 30 2020 03:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99992 * 2 1 4 4 H 1.48494 * 109.47133 * 240.00346 * 3 2 1 5 5 H 1.48501 * 109.46937 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46928 * 120.00570 * 3 2 1 7 7 C 1.37877 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99930 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00110 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40063 * 66.46644 * 9 7 2 11 11 O 1.42097 * 106.40586 * 293.54222 * 9 7 2 12 12 N 1.65608 * 107.21621 * 180.02562 * 9 7 2 13 13 C 1.47028 * 125.64750 * 90.02705 * 12 9 7 14 14 C 1.54323 * 107.26863 * 181.01985 * 13 12 9 15 15 C 1.55157 * 102.94170 * 22.19419 * 14 13 12 16 16 H 1.09008 * 111.00335 * 206.38763 * 15 14 13 17 17 C 1.50695 * 111.00559 * 82.57338 * 15 14 13 18 18 O 1.20761 * 120.00454 * 121.45533 * 17 15 14 19 19 C 1.47424 * 125.64550 * 269.71687 * 12 9 7 20 20 H 0.97001 * 120.00280 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.87978 * 300.44163 * 13 12 9 22 22 H 1.08998 * 109.88163 * 61.45057 * 13 12 9 23 23 H 1.08998 * 110.71492 * 140.55517 * 14 13 12 24 24 H 1.08997 * 110.72185 * 263.82999 * 14 13 12 25 25 H 1.08003 * 119.99959 * 301.45042 * 17 15 14 26 26 H 1.09002 * 110.36507 * 274.74303 * 19 12 9 27 27 H 1.09000 * 110.36762 * 37.07121 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4518 -2.7956 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 2.8299 -4.5647 1.1942 14 6 3.8439 -5.6214 0.7078 15 6 4.1918 -5.1359 -0.7242 16 1 4.5080 -5.9683 -1.3529 17 6 5.2455 -4.0591 -0.6884 18 8 6.2896 -4.2162 -1.2746 19 6 2.8275 -4.5700 -1.1985 20 1 -0.4850 0.8400 0.0004 21 1 3.3384 -3.8134 1.7985 22 1 2.0452 -5.0428 1.7805 23 1 4.7316 -5.6239 1.3404 24 1 3.3866 -6.6104 0.6792 25 1 5.0669 -3.1468 -0.1386 26 1 2.1823 -5.3747 -1.5510 27 1 2.9769 -3.8302 -1.9850 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719101984.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:49 Heat of formation + Delta-G solvation = -125.275686 kcal Electronic energy + Delta-G solvation = -14976.045602 eV Core-core repulsion = 12246.530091 eV Total energy + Delta-G solvation = -2729.515511 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.45981 -37.42775 -35.29934 -34.02175 -33.13808 -30.75248 -28.93935 -26.18145 -23.96919 -21.90088 -20.12523 -18.79972 -17.64928 -16.39722 -16.09540 -15.85847 -15.03980 -14.28894 -14.25196 -14.00372 -13.63227 -13.10209 -12.71579 -12.62301 -12.03926 -11.45928 -11.30002 -11.23098 -11.16765 -11.06297 -10.65654 -10.42628 -10.35263 -10.25418 -9.45608 -9.28061 -9.00490 -8.26783 -6.74259 -5.37772 2.01681 2.14925 3.05961 3.10777 3.15863 4.01727 4.38381 4.42281 4.56779 4.66291 4.93112 5.04964 5.40616 5.46419 5.73441 5.76003 5.89466 5.93652 6.02556 6.06716 6.24384 6.26116 6.75958 7.27938 7.36094 7.44567 7.90382 8.83917 10.19421 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.028228 B = 0.010646 C = 0.008720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.667396 B = 2629.578213 C = 3210.278238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.134 3.866 3 Si 0.920 3.080 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.021 5.021 8 H 0.101 0.899 9 S 2.726 3.274 10 O -0.999 6.999 11 O -0.999 6.999 12 N -1.024 6.024 13 C 0.120 3.880 14 C -0.112 4.112 15 C -0.174 4.174 16 H 0.105 0.895 17 C 0.360 3.640 18 O -0.469 6.469 19 C 0.141 3.859 20 H 0.292 0.708 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 -7.293 1.109 10.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -1.155 5.155 8 H 0.120 0.880 9 S 2.828 3.172 10 O -0.990 6.990 11 O -0.989 6.989 12 N -0.860 5.860 13 C -0.006 4.006 14 C -0.151 4.151 15 C -0.195 4.195 16 H 0.123 0.877 17 C 0.217 3.783 18 O -0.341 6.341 19 C 0.014 3.986 20 H 0.103 0.897 21 H 0.084 0.916 22 H 0.087 0.913 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.119 0.881 26 H 0.090 0.910 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.620 -7.383 0.797 9.948 hybrid contribution 0.823 1.232 0.050 1.482 sum 7.443 -6.151 0.846 9.693 Atomic orbital electron populations 1.69878 1.06793 1.30955 1.39846 1.24745 0.94473 1.00794 0.88463 0.86209 0.79915 0.79685 0.79833 1.18814 1.20057 1.18805 1.30565 1.06033 1.11758 1.67125 0.88048 1.00230 0.71638 0.72529 0.72810 1.93368 1.72347 1.87475 1.45805 1.93362 1.72394 1.87449 1.45740 1.59328 1.62173 1.53996 1.10484 1.21592 0.95834 0.95042 0.88177 1.22574 0.99126 0.99479 0.93899 1.23418 0.96945 0.99556 0.99585 0.87715 1.25988 0.84839 0.90964 0.76550 1.90362 1.27184 1.80241 1.36298 1.21719 0.90576 0.97701 0.88578 0.89736 0.91555 0.91323 0.90287 0.89821 0.88075 0.90987 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.42 13.19 55.43 0.73 -23.69 15 2 C 0.13 3.64 5.46 -17.82 -0.10 3.54 15 3 Si 0.92 20.15 29.54 -169.99 -5.02 15.13 15 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 15 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 15 7 C -1.02 -27.09 9.75 30.60 0.30 -26.79 15 8 H 0.10 2.41 7.81 -52.49 -0.41 2.00 15 9 S 2.73 69.98 5.22 -107.50 -0.56 69.42 15 10 O -1.00 -28.43 17.60 -57.17 -1.01 -29.43 15 11 O -1.00 -28.34 17.60 -57.17 -1.01 -29.35 15 12 N -1.02 -19.27 3.68 -111.29 -0.41 -19.68 15 13 C 0.12 1.78 6.83 -3.06 -0.02 1.76 15 14 C -0.11 -1.22 6.44 -24.90 -0.16 -1.38 15 15 C -0.17 -2.14 3.60 -89.50 -0.32 -2.46 15 16 H 0.10 1.11 8.14 -51.92 -0.42 0.69 15 17 C 0.36 4.93 10.37 36.00 0.37 5.30 15 18 O -0.47 -7.67 17.92 6.00 0.11 -7.56 15 19 C 0.14 2.17 6.45 -2.41 -0.02 2.15 15 20 H 0.29 7.61 8.31 -40.82 -0.34 7.27 15 21 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.08 0.71 8.04 -51.93 -0.42 0.29 15 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.10 1.32 8.06 -52.48 -0.42 0.90 15 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 27 H 0.08 1.25 8.05 -51.93 -0.42 0.83 15 LS Contribution 255.93 15.07 3.86 3.86 Total: -1.00 -34.72 255.93 -6.17 -40.89 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -2.92 Total: -1.71 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 0.06 Total: -17.87 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.32 Total: -43.38 kcal Atomic # 8 Polarization: -64.44 SS G_CDS: -1.91 Total: -66.34 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 69.98 SS G_CDS: -0.56 Total: 69.42 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -34.72 -6.17 -40.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719101984.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.381 kcal (2) G-P(sol) polarization free energy of solvation -34.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds