Wall clock time and date at job start Mon Mar 30 2020 03:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99992 * 2 1 4 4 H 1.48494 * 109.47133 * 240.00346 * 3 2 1 5 5 H 1.48501 * 109.46937 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46928 * 120.00570 * 3 2 1 7 7 C 1.37877 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99930 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00110 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40063 * 66.46644 * 9 7 2 11 11 O 1.42097 * 106.40586 * 293.54222 * 9 7 2 12 12 N 1.65608 * 107.21621 * 180.02562 * 9 7 2 13 13 C 1.47028 * 125.64750 * 90.02705 * 12 9 7 14 14 C 1.54323 * 107.26863 * 181.01985 * 13 12 9 15 15 C 1.55157 * 102.94170 * 22.19419 * 14 13 12 16 16 H 1.09008 * 111.00335 * 206.38763 * 15 14 13 17 17 C 1.50695 * 111.00559 * 82.57338 * 15 14 13 18 18 O 1.20761 * 120.00454 * 121.45533 * 17 15 14 19 19 C 1.47424 * 125.64550 * 269.71687 * 12 9 7 20 20 H 0.97001 * 120.00280 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.87978 * 300.44163 * 13 12 9 22 22 H 1.08998 * 109.88163 * 61.45057 * 13 12 9 23 23 H 1.08998 * 110.71492 * 140.55517 * 14 13 12 24 24 H 1.08997 * 110.72185 * 263.82999 * 14 13 12 25 25 H 1.08003 * 119.99959 * 301.45042 * 17 15 14 26 26 H 1.09002 * 110.36507 * 274.74303 * 19 12 9 27 27 H 1.09000 * 110.36762 * 37.07121 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4518 -2.7956 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 2.8299 -4.5647 1.1942 14 6 3.8439 -5.6214 0.7078 15 6 4.1918 -5.1359 -0.7242 16 1 4.5080 -5.9683 -1.3529 17 6 5.2455 -4.0591 -0.6884 18 8 6.2896 -4.2162 -1.2746 19 6 2.8275 -4.5700 -1.1985 20 1 -0.4850 0.8400 0.0004 21 1 3.3384 -3.8134 1.7985 22 1 2.0452 -5.0428 1.7805 23 1 4.7316 -5.6239 1.3404 24 1 3.3866 -6.6104 0.6792 25 1 5.0669 -3.1468 -0.1386 26 1 2.1823 -5.3747 -1.5510 27 1 2.9769 -3.8302 -1.9850 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719101984.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:49 Heat of formation + Delta-G solvation = -153.168766 kcal Electronic energy + Delta-G solvation = -14977.255137 eV Core-core repulsion = 12246.530091 eV Total energy + Delta-G solvation = -2730.725045 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.60704 -38.64907 -37.42254 -36.14749 -35.18309 -32.02633 -30.07792 -28.25494 -25.15071 -23.15040 -21.19197 -20.73865 -19.29637 -18.30955 -17.32865 -17.18135 -16.87562 -15.99179 -15.85609 -15.37905 -14.98616 -14.47777 -14.05445 -14.00570 -13.84633 -13.32477 -13.00064 -12.55992 -12.50019 -12.43525 -12.33064 -12.20975 -12.17393 -12.03657 -11.23681 -10.99520 -10.53812 -9.76804 -8.74426 -7.48757 0.25423 0.93195 1.34728 1.36128 1.49021 2.20255 2.57927 2.89853 3.34930 3.57613 3.63336 3.77543 4.11602 4.31587 4.39956 4.50582 4.65250 4.85087 4.87767 4.98096 5.04453 5.17247 5.23569 5.39162 5.80916 5.91027 6.36678 6.78392 8.20373 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.028228 B = 0.010646 C = 0.008720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.667396 B = 2629.578213 C = 3210.278238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.248 1.248 7 C -1.040 5.040 8 H 0.123 0.877 9 S 2.733 3.267 10 O -1.040 7.040 11 O -1.038 7.038 12 N -1.025 6.025 13 C 0.104 3.896 14 C -0.095 4.095 15 C -0.160 4.160 16 H 0.131 0.869 17 C 0.365 3.635 18 O -0.496 6.496 19 C 0.129 3.871 20 H 0.299 0.701 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.339 -7.778 1.372 12.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.805 3.195 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.172 1.172 7 C -1.174 5.174 8 H 0.141 0.859 9 S 2.836 3.164 10 O -1.030 7.030 11 O -1.028 7.028 12 N -0.864 5.864 13 C -0.021 4.021 14 C -0.133 4.133 15 C -0.180 4.180 16 H 0.149 0.851 17 C 0.223 3.777 18 O -0.369 6.369 19 C 0.003 3.997 20 H 0.109 0.891 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.125 0.875 24 H 0.127 0.873 25 H 0.123 0.877 26 H 0.106 0.894 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.692 -7.886 1.067 11.785 hybrid contribution 0.185 1.285 -0.029 1.299 sum 8.877 -6.601 1.038 11.111 Atomic orbital electron populations 1.69980 1.08788 1.32410 1.41458 1.25988 0.95323 1.05293 0.87576 0.85211 0.78831 0.74710 0.80778 1.17549 1.18963 1.17166 1.30973 1.07302 1.12488 1.66606 0.85939 0.99539 0.72202 0.73278 0.71362 1.93305 1.74280 1.88316 1.47109 1.93300 1.74271 1.88278 1.46969 1.58700 1.61486 1.52902 1.13350 1.21978 0.96858 0.96281 0.86960 1.22594 0.98939 0.98932 0.92871 1.23338 0.94212 0.99565 1.00925 0.85080 1.26208 0.84534 0.91358 0.75601 1.90366 1.28428 1.80671 1.37451 1.22022 0.92670 0.97785 0.87175 0.89105 0.91134 0.91543 0.87458 0.87344 0.87715 0.89433 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.81 13.19 21.45 0.28 -52.52 15 2 C 0.07 3.88 5.46 84.66 0.46 4.35 15 3 Si 0.99 40.41 29.54 68.60 2.03 42.44 15 4 H -0.25 -9.74 7.11 99.48 0.71 -9.04 15 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 6 H -0.25 -9.47 7.11 99.48 0.71 -8.76 15 7 C -1.04 -55.29 9.75 67.73 0.66 -54.63 15 8 H 0.12 5.72 7.81 -2.91 -0.02 5.69 15 9 S 2.73 142.86 5.22 -56.49 -0.29 142.57 15 10 O -1.04 -60.91 17.60 -128.00 -2.25 -63.16 15 11 O -1.04 -60.51 17.60 -128.00 -2.25 -62.76 15 12 N -1.02 -37.78 3.68 -506.00 -1.86 -39.64 15 13 C 0.10 2.90 6.83 86.73 0.59 3.50 15 14 C -0.09 -1.68 6.44 31.78 0.20 -1.47 15 15 C -0.16 -3.38 3.60 -10.07 -0.04 -3.42 15 16 H 0.13 2.21 8.14 -2.38 -0.02 2.19 15 17 C 0.36 9.05 10.37 71.23 0.74 9.79 15 18 O -0.50 -15.10 17.92 -1.45 -0.03 -15.13 15 19 C 0.13 3.76 6.45 86.93 0.56 4.32 15 20 H 0.30 15.89 8.31 -92.71 -0.77 15.12 15 21 H 0.07 1.88 8.14 -2.39 -0.02 1.87 15 22 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 23 H 0.11 1.40 8.04 -2.39 -0.02 1.38 15 24 H 0.11 1.48 8.14 -2.39 -0.02 1.46 15 25 H 0.11 2.52 8.06 -2.91 -0.02 2.49 15 26 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 27 H 0.07 2.09 8.05 -2.39 -0.02 2.07 15 Total: -1.00 -76.74 255.93 -0.03 -76.76 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.17 Total: 9.01 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 3.18 Total: -37.57 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -1.58 Total: -92.16 kcal Atomic # 8 Polarization: -136.52 SS G_CDS: -4.53 Total: -141.05 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Atomic # 16 Polarization: 142.86 SS G_CDS: -0.29 Total: 142.57 kcal Total: -76.74 -0.03 -76.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719101984.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.405 kcal (2) G-P(sol) polarization free energy of solvation -76.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds