Wall clock time and date at job start Mon Mar 30 2020 03:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36942 * 119.99837 * 2 1 4 4 H 1.08001 * 119.99503 * 160.34775 * 3 2 1 5 5 C 1.38811 * 120.00069 * 340.07576 * 3 2 1 6 6 N 1.31612 * 119.99848 * 344.19011 * 5 3 2 7 7 Si 1.86800 * 119.99905 * 164.19725 * 5 3 2 8 8 H 1.48500 * 109.47370 * 59.99412 * 7 5 3 9 9 H 1.48498 * 109.47170 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47025 * 299.99786 * 7 5 3 11 11 C 1.46500 * 120.00398 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47110 * 270.00188 * 11 2 1 13 13 H 1.08990 * 110.76411 * 182.04464 * 12 11 2 14 14 N 1.47315 * 110.85457 * 305.76527 * 12 11 2 15 15 C 1.38017 * 114.48799 * 118.17647 * 14 12 11 16 16 C 1.31692 * 121.13550 * 0.02562 * 15 14 12 17 17 Cl 1.73600 * 126.86521 * 179.97438 * 16 15 14 18 18 S 1.77675 * 106.26355 * 359.97438 * 16 15 14 19 19 H 1.09001 * 109.47088 * 84.91907 * 1 2 3 20 20 H 1.08995 * 109.46801 * 204.92275 * 1 2 3 21 21 H 1.09006 * 109.47013 * 324.92007 * 1 2 3 22 22 H 0.97002 * 119.99896 * 179.97438 * 6 5 3 23 23 H 1.09003 * 109.46610 * 29.99325 * 11 2 1 24 24 H 1.08996 * 109.47410 * 149.99743 * 11 2 1 25 25 H 0.96993 * 122.75661 * 298.13868 * 14 12 11 26 26 H 1.08004 * 119.43395 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1825 1.2131 0.3146 5 6 1.5179 2.3521 -0.4097 6 7 0.3887 2.2872 -1.0827 7 14 2.2705 4.0134 -0.0059 8 1 3.6224 4.1053 -0.6134 9 1 1.4082 5.0929 -0.5501 10 1 2.3789 4.1628 1.4677 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4417 13 1 3.0286 -2.6359 1.4661 14 7 3.1280 -0.6472 2.2049 15 6 2.4085 -0.1710 3.2821 16 6 1.2182 -0.6536 3.5729 17 17 0.1896 -0.1684 4.8845 18 16 0.8757 -1.9007 2.3546 19 1 -0.3633 0.0910 -1.0236 20 1 -0.3633 -0.9319 0.4330 21 1 -0.3633 0.8410 0.5907 22 1 -0.0529 3.1022 -1.3686 23 1 1.6084 -2.0281 -0.5147 24 1 3.1499 -1.1381 -0.5144 25 1 4.0064 -0.3096 1.9700 26 1 2.8292 0.6104 3.8977 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725551509.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:47 Heat of formation + Delta-G solvation = 57.666276 kcal Electronic energy + Delta-G solvation = -13015.507994 eV Core-core repulsion = 10669.208695 eV Total energy + Delta-G solvation = -2346.299298 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 234.029 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.78314 -36.13150 -35.00316 -31.67847 -29.68412 -27.37456 -25.77487 -23.47615 -20.98561 -19.86092 -17.89578 -16.49683 -15.73504 -15.11731 -14.31391 -14.14222 -13.63781 -13.27282 -12.58863 -12.34265 -12.19700 -11.60361 -11.19342 -10.86058 -10.76935 -10.52963 -10.35912 -10.17970 -9.98789 -9.79629 -9.58904 -8.50278 -8.24623 -6.84611 -6.20199 -5.65644 -3.11069 1.86748 2.60203 2.80717 2.94658 3.36465 3.42903 3.44288 3.94198 4.50454 5.31787 5.42386 5.69584 5.78039 5.88902 6.05973 6.28356 6.50155 7.08978 7.31980 7.60341 7.76771 7.90927 7.96020 8.41773 9.26909 9.91050 10.40036 11.35730 Molecular weight = 234.03amu Principal moments of inertia in cm(-1) A = 0.025789 B = 0.011095 C = 0.009642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.466864 B = 2523.038334 C = 2903.175760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.582 5.582 3 C -0.247 4.247 4 H 0.063 0.937 5 C 0.003 3.997 6 N -0.902 5.902 7 Si 0.898 3.102 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.286 1.286 11 C 0.139 3.861 12 C 0.156 3.844 13 H 0.086 0.914 14 N -0.702 5.702 15 C 0.155 3.845 16 C -0.195 4.195 17 Cl -0.029 7.029 18 S -0.145 6.145 19 H 0.020 0.980 20 H 0.019 0.981 21 H 0.038 0.962 22 H 0.252 0.748 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.413 0.587 26 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.189 -6.930 7.507 11.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.303 5.303 3 C -0.377 4.377 4 H 0.080 0.920 5 C -0.196 4.196 6 N -0.546 5.546 7 Si 0.728 3.272 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.213 1.213 11 C 0.007 3.993 12 C -0.063 4.063 13 H 0.103 0.897 14 N -0.332 5.332 15 C 0.019 3.981 16 C -0.345 4.345 17 Cl -0.001 7.001 18 S 0.088 5.912 19 H 0.038 0.962 20 H 0.038 0.962 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.251 0.749 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.958 -7.590 7.256 10.909 hybrid contribution 1.557 2.247 0.463 2.773 sum 4.516 -5.342 7.719 10.417 Atomic orbital electron populations 1.20939 0.81759 0.96984 0.98484 1.43751 1.02154 0.99767 1.84631 1.18980 0.96144 0.85066 1.37467 0.91959 1.24894 0.97861 0.98055 0.98748 1.70100 1.18925 1.26648 1.38966 0.86452 0.78194 0.84480 0.78078 1.21217 1.21681 1.21307 1.21163 0.97167 0.90394 0.90594 1.25550 0.91330 0.91913 0.97531 0.89692 1.44577 1.20230 1.40447 1.27935 1.20093 0.92184 0.95962 0.89816 1.22313 0.97369 1.12340 1.02434 1.98272 1.66338 1.90888 1.44585 1.85839 1.28809 1.46083 1.30483 0.96185 0.96210 0.94286 0.93817 0.92671 0.92066 0.74862 0.83885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.10 8.29 59.85 0.50 4.60 15 2 N -0.58 -13.97 2.66 -181.12 -0.48 -14.45 15 3 C -0.25 -6.44 8.94 -15.06 -0.13 -6.57 15 4 H 0.06 1.55 7.60 -52.49 -0.40 1.15 15 5 C 0.00 0.08 5.05 -17.43 -0.09 -0.01 15 6 N -0.90 -26.43 10.69 55.49 0.59 -25.83 15 7 Si 0.90 21.75 29.58 -169.99 -5.03 16.72 15 8 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 11 C 0.14 2.65 5.79 -4.04 -0.02 2.63 15 12 C 0.16 2.59 4.55 -3.60 -0.02 2.57 15 13 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 14 N -0.70 -11.31 4.73 -57.16 -0.27 -11.58 15 15 C 0.15 2.63 11.01 -16.64 -0.18 2.45 15 16 C -0.20 -3.56 7.30 28.86 0.21 -3.35 15 17 Cl -0.03 -0.48 29.31 -51.86 -1.52 -2.00 15 18 S -0.14 -2.66 20.00 -107.50 -2.15 -4.81 15 19 H 0.02 0.55 7.41 -51.93 -0.38 0.16 15 20 H 0.02 0.45 6.11 -51.93 -0.32 0.13 15 21 H 0.04 1.09 7.20 -51.93 -0.37 0.71 15 22 H 0.25 7.23 8.31 -40.82 -0.34 6.89 15 23 H 0.06 1.01 8.07 -51.93 -0.42 0.59 15 24 H 0.06 1.12 8.04 -51.93 -0.42 0.70 15 25 H 0.41 5.83 8.95 -40.82 -0.37 5.47 15 26 H 0.14 2.14 8.06 -52.48 -0.42 1.72 15 LS Contribution 247.12 15.07 3.72 3.72 Total: -1.00 -29.77 247.12 -7.53 -37.30 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -2.66 Total: -1.40 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 0.26 Total: 2.33 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.16 Total: -51.87 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -2.15 Total: -4.81 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.52 Total: -2.00 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.77 -7.53 -37.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725551509.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.968 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds