Wall clock time and date at job start Mon Mar 30 2020 03:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36942 * 119.99837 * 2 1 4 4 H 1.08001 * 119.99503 * 160.34775 * 3 2 1 5 5 C 1.38811 * 120.00069 * 340.07576 * 3 2 1 6 6 N 1.31612 * 119.99848 * 344.19011 * 5 3 2 7 7 Si 1.86800 * 119.99905 * 164.19725 * 5 3 2 8 8 H 1.48500 * 109.47370 * 59.99412 * 7 5 3 9 9 H 1.48498 * 109.47170 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47025 * 299.99786 * 7 5 3 11 11 C 1.46500 * 120.00398 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47110 * 270.00188 * 11 2 1 13 13 H 1.08990 * 110.76411 * 182.04464 * 12 11 2 14 14 N 1.47315 * 110.85457 * 305.76527 * 12 11 2 15 15 C 1.38017 * 114.48799 * 118.17647 * 14 12 11 16 16 C 1.31692 * 121.13550 * 0.02562 * 15 14 12 17 17 Cl 1.73600 * 126.86521 * 179.97438 * 16 15 14 18 18 S 1.77675 * 106.26355 * 359.97438 * 16 15 14 19 19 H 1.09001 * 109.47088 * 84.91907 * 1 2 3 20 20 H 1.08995 * 109.46801 * 204.92275 * 1 2 3 21 21 H 1.09006 * 109.47013 * 324.92007 * 1 2 3 22 22 H 0.97002 * 119.99896 * 179.97438 * 6 5 3 23 23 H 1.09003 * 109.46610 * 29.99325 * 11 2 1 24 24 H 1.08996 * 109.47410 * 149.99743 * 11 2 1 25 25 H 0.96993 * 122.75661 * 298.13868 * 14 12 11 26 26 H 1.08004 * 119.43395 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1825 1.2131 0.3146 5 6 1.5179 2.3521 -0.4097 6 7 0.3887 2.2872 -1.0827 7 14 2.2705 4.0134 -0.0059 8 1 3.6224 4.1053 -0.6134 9 1 1.4082 5.0929 -0.5501 10 1 2.3789 4.1628 1.4677 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4417 13 1 3.0286 -2.6359 1.4661 14 7 3.1280 -0.6472 2.2049 15 6 2.4085 -0.1710 3.2821 16 6 1.2182 -0.6536 3.5729 17 17 0.1896 -0.1684 4.8845 18 16 0.8757 -1.9007 2.3546 19 1 -0.3633 0.0910 -1.0236 20 1 -0.3633 -0.9319 0.4330 21 1 -0.3633 0.8410 0.5907 22 1 -0.0529 3.1022 -1.3686 23 1 1.6084 -2.0281 -0.5147 24 1 3.1499 -1.1381 -0.5144 25 1 4.0064 -0.3096 1.9700 26 1 2.8292 0.6104 3.8977 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725551509.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:46 Heat of formation + Delta-G solvation = 38.997095 kcal Electronic energy + Delta-G solvation = -13016.317550 eV Core-core repulsion = 10669.208695 eV Total energy + Delta-G solvation = -2347.108855 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 234.029 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.20441 -37.51077 -36.73793 -33.51427 -31.27689 -28.88378 -27.82313 -25.13925 -22.70493 -21.25266 -19.36164 -18.39250 -17.13193 -16.89816 -15.96201 -15.48715 -15.45147 -14.96069 -14.18929 -13.89475 -13.64352 -13.35126 -12.94983 -12.74391 -12.55226 -12.33657 -11.97558 -11.92630 -11.66893 -11.51179 -11.01640 -10.55161 -9.64551 -8.80364 -7.82688 -7.52366 -5.17289 0.52075 1.25763 1.44973 1.46483 1.49188 1.53627 1.59427 2.54117 2.64961 3.39082 3.75948 4.21675 4.43797 4.48168 4.63894 4.83119 4.98784 5.10169 5.52237 5.69784 5.81552 5.97364 6.37842 6.76419 7.22222 7.95657 8.40941 9.29534 Molecular weight = 234.03amu Principal moments of inertia in cm(-1) A = 0.025789 B = 0.011095 C = 0.009642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.466864 B = 2523.038334 C = 2903.175760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.596 5.596 3 C -0.233 4.233 4 H 0.080 0.920 5 C -0.061 4.061 6 N -0.941 5.941 7 Si 0.956 3.044 8 H -0.273 1.273 9 H -0.306 1.306 10 H -0.283 1.283 11 C 0.134 3.866 12 C 0.170 3.830 13 H 0.127 0.873 14 N -0.698 5.698 15 C 0.157 3.843 16 C -0.220 4.220 17 Cl -0.023 7.023 18 S -0.180 6.180 19 H -0.011 1.011 20 H 0.040 0.960 21 H 0.002 0.998 22 H 0.241 0.759 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.425 0.575 26 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.140 -7.578 8.270 12.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.317 5.317 3 C -0.363 4.363 4 H 0.097 0.903 5 C -0.255 4.255 6 N -0.589 5.589 7 Si 0.786 3.214 8 H -0.199 1.199 9 H -0.233 1.233 10 H -0.209 1.209 11 C 0.004 3.996 12 C -0.048 4.048 13 H 0.144 0.856 14 N -0.328 5.328 15 C 0.021 3.979 16 C -0.369 4.369 17 Cl 0.005 6.995 18 S 0.053 5.947 19 H 0.007 0.993 20 H 0.059 0.941 21 H 0.021 0.979 22 H 0.051 0.949 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.265 0.735 26 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.972 -8.274 8.038 12.561 hybrid contribution 0.983 2.351 0.245 2.560 sum 5.955 -5.923 8.283 11.796 Atomic orbital electron populations 1.20550 0.82957 0.96312 0.95996 1.43898 1.01741 1.01173 1.84936 1.19397 0.96531 0.85603 1.34780 0.90280 1.25626 0.98735 1.01283 0.99844 1.70276 1.20787 1.26510 1.41363 0.85497 0.77566 0.80598 0.77722 1.19921 1.23257 1.20939 1.21424 0.97331 0.88378 0.92473 1.25271 0.90724 0.93538 0.95313 0.85620 1.44636 1.20540 1.40214 1.27451 1.20429 0.91828 0.95748 0.89878 1.22484 0.98138 1.13192 1.03079 1.98267 1.66295 1.90819 1.44163 1.85903 1.30793 1.46491 1.31559 0.99253 0.94129 0.97909 0.94939 0.91763 0.90661 0.73475 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.48 8.29 127.77 1.06 10.54 15 2 N -0.60 -27.71 2.66 -726.93 -1.94 -29.65 15 3 C -0.23 -11.73 8.94 84.03 0.75 -10.98 15 4 H 0.08 3.67 7.60 -2.91 -0.02 3.65 15 5 C -0.06 -3.33 5.05 84.86 0.43 -2.90 15 6 N -0.94 -56.28 10.69 21.65 0.23 -56.05 15 7 Si 0.96 44.49 29.58 68.60 2.03 46.52 15 8 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 9 H -0.31 -14.84 7.11 99.48 0.71 -14.13 15 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 15 11 C 0.13 4.72 5.79 86.38 0.50 5.22 15 12 C 0.17 5.04 4.55 86.22 0.39 5.43 15 13 H 0.13 2.87 8.14 -2.39 -0.02 2.85 15 14 N -0.70 -19.94 4.73 -334.76 -1.58 -21.53 15 15 C 0.16 4.90 11.01 83.04 0.91 5.81 15 16 C -0.22 -7.60 7.30 67.14 0.49 -7.11 15 17 Cl -0.02 -0.75 29.31 -2.72 -0.08 -0.83 15 18 S -0.18 -6.25 20.00 -56.49 -1.13 -7.38 15 19 H -0.01 -0.61 7.41 -2.39 -0.02 -0.63 15 20 H 0.04 1.84 6.11 -2.39 -0.01 1.83 15 21 H 0.00 0.12 7.20 -2.38 -0.02 0.10 15 22 H 0.24 14.31 8.31 -92.71 -0.77 13.54 15 23 H 0.06 2.17 8.07 -2.39 -0.02 2.15 15 24 H 0.08 2.46 8.04 -2.39 -0.02 2.44 15 25 H 0.42 10.20 8.95 -92.71 -0.83 9.37 15 26 H 0.16 4.37 8.06 -2.91 -0.02 4.35 15 Total: -1.00 -63.27 247.12 2.43 -60.83 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: 0.37 Total: 2.08 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 4.53 Total: 6.00 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -3.29 Total: -107.22 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: -6.25 SS G_CDS: -1.13 Total: -7.38 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -63.27 2.43 -60.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725551509.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.828 kcal (2) G-P(sol) polarization free energy of solvation -63.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds