Wall clock time and date at job start Mon Mar 30 2020 03:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28629 * 125.55320 * 2 1 4 4 N 1.28714 * 110.17860 * 179.97438 * 3 2 1 5 5 H 0.97005 * 125.87250 * 180.02562 * 4 3 2 6 6 C 1.35312 * 108.26416 * 0.02562 * 4 3 2 7 7 C 1.33767 * 125.55788 * 179.69222 * 2 1 3 8 8 S 1.76198 * 126.75208 * 359.97438 * 7 2 1 9 9 O 1.52206 * 109.47424 * 89.99841 * 8 7 2 10 10 O 1.42099 * 109.47348 * 329.99633 * 8 7 2 11 11 N 1.65598 * 109.47168 * 209.99860 * 8 7 2 12 12 C 1.36936 * 120.00099 * 179.97438 * 11 8 7 13 13 H 1.08004 * 120.00162 * 0.02562 * 12 11 8 14 14 C 1.38813 * 119.99999 * 179.97438 * 12 11 8 15 15 N 1.31621 * 120.00284 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99999 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46910 * 60.00330 * 16 14 12 18 18 H 1.48501 * 109.47089 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47332 * 300.00405 * 16 14 12 20 20 H 1.09001 * 109.47060 * 90.02876 * 1 2 3 21 21 H 1.09004 * 109.47073 * 210.02365 * 1 2 3 22 22 H 1.09000 * 109.47212 * 330.02448 * 1 2 3 23 23 H 1.08001 * 126.91827 * 179.97438 * 6 4 3 24 24 H 0.96698 * 113.99721 * 59.99869 * 9 8 7 25 25 H 0.97000 * 120.00282 * 359.97438 * 11 8 7 26 26 H 0.96997 * 119.99944 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2130 1.0465 0.0000 4 7 3.4541 0.7052 0.0005 5 1 4.2106 1.3124 0.0010 6 6 3.5223 -0.6462 0.0003 7 6 2.2429 -1.0882 0.0058 8 16 1.7075 -2.7668 0.0155 9 8 1.5528 -3.2583 -1.4167 10 8 0.4585 -2.8618 0.6864 11 7 2.8283 -3.6992 0.8010 12 6 2.6254 -5.0469 0.9342 13 1 1.7347 -5.5018 0.5266 14 6 3.5652 -5.8285 1.5921 15 7 4.6509 -5.2742 2.0884 16 14 3.2881 -7.6669 1.7745 17 1 3.1837 -8.2875 0.4295 18 1 4.4287 -8.2687 2.5108 19 1 2.0314 -7.9057 2.5287 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 4.4173 -1.2505 0.0003 24 1 2.3682 -3.2219 -1.9352 25 1 3.6285 -3.2907 1.1667 26 1 5.3074 -5.8204 2.5485 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725552020.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:35 Heat of formation + Delta-G solvation = 47.747945 kcal Electronic energy + Delta-G solvation = -15026.137535 eV Core-core repulsion = 12270.991732 eV Total energy + Delta-G solvation = -2755.145803 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 234.057 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.07713 -36.92719 -36.29758 -35.34633 -35.05909 -32.36348 -31.60225 -29.97478 -25.58053 -24.40287 -23.90701 -20.38233 -19.57361 -18.74579 -18.15640 -17.57595 -17.50832 -16.34469 -15.90873 -15.41312 -15.02706 -14.86680 -14.61686 -13.99627 -13.44363 -13.22525 -13.01912 -12.82705 -12.14736 -12.08247 -11.80990 -11.66994 -11.16868 -10.88488 -10.60473 -10.50626 -9.17698 -7.83569 -5.40016 -5.11076 -0.14186 0.92918 0.99835 1.45430 1.49339 1.56039 1.86311 2.67104 3.33483 3.43245 3.60188 3.90666 4.10566 4.26418 4.35215 4.57153 4.76486 4.99505 5.19670 5.52541 5.80301 6.34120 6.49807 7.03750 7.52654 7.85505 8.52241 9.39910 Molecular weight = 234.06amu Principal moments of inertia in cm(-1) A = 0.044459 B = 0.008366 C = 0.007546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.647807 B = 3345.989734 C = 3709.568922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.186 5.186 3 N -0.075 5.075 4 N -0.302 5.302 5 H 0.489 0.511 6 C 0.032 3.968 7 C -0.352 4.352 8 S 1.809 4.191 9 O -0.947 6.947 10 O -1.072 7.072 11 N -0.953 5.953 12 C -0.256 4.256 13 H 0.037 0.963 14 C -0.057 4.057 15 N -0.954 5.954 16 Si 0.939 3.061 17 H -0.278 1.278 18 H -0.280 1.280 19 H -0.295 1.295 20 H 0.121 0.879 21 H 0.106 0.894 22 H 0.137 0.863 23 H 0.249 0.751 24 H 0.413 0.587 25 H 0.371 0.629 26 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 20.780 -7.508 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N 0.014 4.986 3 N -0.050 5.050 4 N -0.037 5.037 5 H 0.345 0.655 6 C -0.118 4.118 7 C -0.542 4.542 8 S 1.869 4.131 9 O -0.797 6.797 10 O -1.059 7.059 11 N -0.695 5.695 12 C -0.393 4.393 13 H 0.055 0.945 14 C -0.252 4.252 15 N -0.605 5.605 16 Si 0.768 3.232 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.222 1.222 20 H 0.139 0.861 21 H 0.124 0.876 22 H 0.155 0.845 23 H 0.265 0.735 24 H 0.272 0.728 25 H 0.199 0.801 26 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.298 21.634 -7.551 22.916 hybrid contribution 0.798 -1.696 0.729 2.011 sum 1.096 19.938 -6.822 21.101 Atomic orbital electron populations 1.23111 0.69436 1.08416 1.07639 1.47952 1.10772 1.02682 1.37237 1.78060 0.91131 1.13561 1.22284 1.45211 1.06371 1.09674 1.42457 0.65474 1.24375 1.01201 0.82683 1.03531 1.43124 0.97792 1.17027 0.96246 1.82153 0.79765 0.77763 0.73375 1.85369 1.48372 1.91868 1.54136 1.92328 1.54079 1.86320 1.73209 1.53002 1.34232 1.10638 1.71650 1.19565 1.02072 0.88947 1.28670 0.94517 1.25485 0.97572 1.00927 1.01177 1.69712 1.11369 1.35259 1.44121 0.85761 0.76558 0.83030 0.77819 1.20423 1.20553 1.22231 0.86126 0.87593 0.84482 0.73455 0.72770 0.80109 0.93992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.16 11.15 127.77 1.42 2.59 15 2 N -0.19 -4.42 3.69 -367.60 -1.36 -5.78 15 3 N -0.07 -1.19 13.15 37.02 0.49 -0.71 15 4 N -0.30 -2.98 6.98 -57.35 -0.40 -3.38 15 5 H 0.49 -0.60 8.96 -219.95 -1.97 -2.57 15 6 C 0.03 0.57 12.04 83.49 1.01 1.58 15 7 C -0.35 -10.36 7.12 83.73 0.60 -9.77 15 8 S 1.81 85.81 5.24 -56.49 -0.30 85.52 15 9 O -0.95 -44.22 13.56 -126.85 -1.72 -45.94 15 10 O -1.07 -64.50 15.87 -126.85 -2.01 -66.51 15 11 N -0.95 -52.76 5.82 -54.26 -0.32 -53.07 15 12 C -0.26 -16.64 9.94 84.03 0.84 -15.80 15 13 H 0.04 2.54 7.82 -2.91 -0.02 2.52 15 14 C -0.06 -3.61 5.50 84.86 0.47 -3.14 15 15 N -0.95 -59.75 13.06 21.65 0.28 -59.47 15 16 Si 0.94 50.49 29.55 68.60 2.03 52.52 15 17 H -0.28 -14.45 7.11 99.48 0.71 -13.75 15 18 H -0.28 -14.35 7.11 99.48 0.71 -13.65 15 19 H -0.29 -16.10 7.11 99.48 0.71 -15.39 15 20 H 0.12 2.06 8.14 -2.39 -0.02 2.04 15 21 H 0.11 3.42 5.78 -2.38 -0.01 3.41 15 22 H 0.14 1.78 8.14 -2.39 -0.02 1.77 15 23 H 0.25 3.07 8.06 -2.91 -0.02 3.05 15 24 H 0.41 14.60 9.03 -87.93 -0.79 13.80 15 25 H 0.37 19.32 7.99 -96.74 -0.77 18.55 15 26 H 0.25 15.10 8.31 -92.71 -0.77 14.33 15 Total: -1.00 -105.99 246.22 -1.26 -107.25 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -2.29 Total: 14.10 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 4.33 Total: -24.55 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -1.30 Total: -122.40 kcal Atomic # 8 Polarization: -108.71 SS G_CDS: -3.73 Total: -112.44 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.03 Total: 52.52 kcal Atomic # 16 Polarization: 85.81 SS G_CDS: -0.30 Total: 85.52 kcal Total: -105.99 -1.26 -107.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725552020.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.997 kcal (2) G-P(sol) polarization free energy of solvation -105.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds