Wall clock time and date at job start Mon Mar 30 2020 03:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28629 * 125.55320 * 2 1 4 4 N 1.28714 * 110.17860 * 179.97438 * 3 2 1 5 5 H 0.97005 * 125.87250 * 180.02562 * 4 3 2 6 6 C 1.35312 * 108.26416 * 0.02562 * 4 3 2 7 7 C 1.33767 * 125.55788 * 179.69222 * 2 1 3 8 8 S 1.76198 * 126.75208 * 359.97438 * 7 2 1 9 9 O 1.52204 * 109.47256 * 269.99886 * 8 7 2 10 10 O 1.42103 * 109.47352 * 29.99846 * 8 7 2 11 11 N 1.65605 * 109.47013 * 149.99878 * 8 7 2 12 12 C 1.36946 * 119.99668 * 180.02562 * 11 8 7 13 13 H 1.07998 * 120.00119 * 359.97438 * 12 11 8 14 14 C 1.38810 * 119.99516 * 180.02562 * 12 11 8 15 15 N 1.31621 * 120.00392 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99584 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.46977 * 90.00071 * 16 14 12 18 18 H 1.48503 * 109.46913 * 209.99593 * 16 14 12 19 19 H 1.48493 * 109.46970 * 329.99611 * 16 14 12 20 20 H 1.09001 * 109.47060 * 90.02876 * 1 2 3 21 21 H 1.09004 * 109.47073 * 210.02365 * 1 2 3 22 22 H 1.09000 * 109.47212 * 330.02448 * 1 2 3 23 23 H 1.08001 * 126.91875 * 180.02562 * 6 4 3 24 24 H 0.96702 * 114.00008 * 299.99937 * 9 8 7 25 25 H 0.96991 * 120.00034 * 359.97438 * 11 8 7 26 26 H 0.96997 * 119.99729 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2130 1.0465 0.0000 4 7 3.4541 0.7052 0.0005 5 1 4.2106 1.3124 0.0010 6 6 3.5223 -0.6462 0.0003 7 6 2.2429 -1.0882 0.0058 8 16 1.7075 -2.7668 0.0155 9 8 1.5539 -3.2422 1.4532 10 8 0.4579 -2.8694 -0.6533 11 7 2.8277 -3.7080 -0.7603 12 6 2.6247 -5.0572 -0.8782 13 1 1.7343 -5.5074 -0.4649 14 6 3.5640 -5.8461 -1.5280 15 7 4.6493 -5.2974 -2.0313 16 14 3.2874 -7.6866 -1.6882 17 1 2.5473 -7.9684 -2.9444 18 1 4.5985 -8.3833 -1.7193 19 1 2.4968 -8.1711 -0.5284 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 4.4173 -1.2506 0.0011 24 1 2.3697 -3.1999 1.9708 25 1 3.6272 -3.3035 -1.1318 26 1 5.3054 -5.8487 -2.4857 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725552021.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:38 Heat of formation + Delta-G solvation = 89.919166 kcal Electronic energy + Delta-G solvation = -15023.179576 eV Core-core repulsion = 12269.862454 eV Total energy + Delta-G solvation = -2753.317122 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 234.057 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.55432 -35.56353 -34.90693 -33.54705 -33.46327 -30.92803 -29.76696 -28.76518 -23.63047 -23.09466 -22.60643 -19.14820 -18.15978 -16.90117 -16.75989 -16.24251 -16.03221 -14.95111 -14.12078 -13.91718 -13.59909 -13.48803 -12.96402 -12.65347 -12.09483 -11.77984 -11.08466 -10.78781 -10.54772 -10.40267 -10.07191 -9.97113 -9.36540 -9.25495 -9.20605 -8.98021 -7.31416 -5.71268 -3.92016 -3.07948 1.04056 2.18092 2.22710 3.12262 3.53066 3.58165 3.62455 4.58514 4.74929 4.86137 5.19273 5.26408 5.37682 5.56288 5.63852 5.75430 5.80683 6.46373 6.65049 6.87264 7.76059 7.94231 8.22642 8.40766 9.57992 9.75582 10.31081 11.51955 Molecular weight = 234.06amu Principal moments of inertia in cm(-1) A = 0.044491 B = 0.008364 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.194949 B = 3346.743404 C = 3710.116680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.220 5.220 3 N -0.129 5.129 4 N -0.328 5.328 5 H 0.457 0.543 6 C 0.005 3.995 7 C -0.399 4.399 8 S 1.933 4.067 9 O -0.948 6.948 10 O -0.992 6.992 11 N -0.946 5.946 12 C -0.258 4.258 13 H 0.072 0.928 14 C 0.004 3.996 15 N -0.928 5.928 16 Si 0.896 3.104 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.280 1.280 20 H 0.098 0.902 21 H 0.110 0.890 22 H 0.087 0.913 23 H 0.211 0.789 24 H 0.400 0.600 25 H 0.383 0.617 26 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.056 16.219 6.381 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.029 5.029 3 N -0.104 5.104 4 N -0.053 5.053 5 H 0.305 0.695 6 C -0.158 4.158 7 C -0.595 4.595 8 S 2.014 3.986 9 O -0.796 6.796 10 O -0.977 6.977 11 N -0.693 5.693 12 C -0.391 4.391 13 H 0.090 0.910 14 C -0.194 4.194 15 N -0.576 5.576 16 Si 0.726 3.274 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.205 1.205 20 H 0.117 0.883 21 H 0.129 0.871 22 H 0.105 0.895 23 H 0.227 0.773 24 H 0.257 0.743 25 H 0.213 0.787 26 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.944 16.780 6.411 17.988 hybrid contribution 1.299 -1.389 -0.297 1.925 sum 0.356 15.392 6.113 16.565 Atomic orbital electron populations 1.22315 0.71084 1.05088 1.05960 1.46110 1.08489 1.01961 1.46384 1.77935 0.89467 1.13187 1.29825 1.44966 1.06693 1.09618 1.43982 0.69514 1.23580 1.01092 0.82082 1.09007 1.39928 0.95247 1.17443 1.06899 1.65735 0.79643 0.77305 0.75907 1.85622 1.47807 1.92664 1.53479 1.92682 1.47456 1.85382 1.72171 1.51176 1.33014 1.12629 1.72500 1.19310 1.04162 0.84646 1.31021 0.91023 1.24893 0.96972 0.97859 0.99699 1.69647 1.10853 1.34600 1.42506 0.86381 0.76833 0.86027 0.78136 1.21511 1.21676 1.20504 0.88324 0.87130 0.89467 0.77251 0.74259 0.78705 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.23 10.61 59.85 0.64 1.86 15 2 N -0.22 -3.18 3.69 -67.54 -0.25 -3.42 15 3 N -0.13 -1.52 13.15 60.35 0.79 -0.72 15 4 N -0.33 -2.88 6.98 30.52 0.21 -2.67 15 5 H 0.46 1.68 8.96 -190.40 -1.71 -0.03 15 6 C 0.00 0.05 12.03 -17.05 -0.21 -0.15 15 7 C -0.40 -6.49 7.12 -17.74 -0.13 -6.61 15 8 S 1.93 44.12 5.03 -107.50 -0.54 43.58 15 9 O -0.95 -21.15 13.56 -58.38 -0.79 -21.94 15 10 O -0.99 -28.06 16.62 -58.38 -0.97 -29.03 15 11 N -0.95 -24.85 5.82 31.50 0.18 -24.67 15 12 C -0.26 -7.84 9.94 -15.06 -0.15 -7.99 15 13 H 0.07 2.27 7.82 -52.49 -0.41 1.86 15 14 C 0.00 0.11 5.50 -17.43 -0.10 0.02 15 15 N -0.93 -28.04 13.06 55.49 0.72 -27.32 15 16 Si 0.90 23.49 29.55 -169.99 -5.02 18.47 15 17 H -0.29 -7.59 7.11 56.52 0.40 -7.18 15 18 H -0.29 -7.42 7.11 56.52 0.40 -7.02 15 19 H -0.28 -7.24 7.11 56.52 0.40 -6.83 15 20 H 0.10 1.22 8.14 -51.93 -0.42 0.80 15 21 H 0.11 1.65 6.98 -51.93 -0.36 1.28 15 22 H 0.09 0.76 8.14 -51.93 -0.42 0.33 15 23 H 0.21 1.90 8.06 -52.49 -0.42 1.47 15 24 H 0.40 6.81 9.03 67.38 0.61 7.41 15 25 H 0.38 9.59 7.98 -34.47 -0.28 9.32 15 26 H 0.25 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 247.42 15.07 3.73 3.73 Total: -1.00 -43.99 247.42 -4.42 -48.41 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -2.55 Total: 8.47 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 0.06 Total: -12.88 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 1.67 Total: -58.81 kcal Atomic # 8 Polarization: -49.21 SS G_CDS: -1.76 Total: -50.97 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.47 kcal Atomic # 16 Polarization: 44.12 SS G_CDS: -0.54 Total: 43.58 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -43.99 -4.42 -48.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725552021.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.334 kcal (2) G-P(sol) polarization free energy of solvation -43.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds