Wall clock time and date at job start Mon Mar 30 2020 03:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28629 * 125.55320 * 2 1 4 4 N 1.28714 * 110.17860 * 179.97438 * 3 2 1 5 5 H 0.97005 * 125.87250 * 180.02562 * 4 3 2 6 6 C 1.35312 * 108.26416 * 0.02562 * 4 3 2 7 7 C 1.33767 * 125.55788 * 179.69222 * 2 1 3 8 8 S 1.76198 * 126.75208 * 359.97438 * 7 2 1 9 9 O 1.52204 * 109.47256 * 269.99886 * 8 7 2 10 10 O 1.42103 * 109.47352 * 29.99846 * 8 7 2 11 11 N 1.65605 * 109.47013 * 149.99878 * 8 7 2 12 12 C 1.36946 * 119.99668 * 180.02562 * 11 8 7 13 13 H 1.07998 * 120.00119 * 359.97438 * 12 11 8 14 14 C 1.38810 * 119.99516 * 180.02562 * 12 11 8 15 15 N 1.31621 * 120.00392 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99584 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.46977 * 90.00071 * 16 14 12 18 18 H 1.48503 * 109.46913 * 209.99593 * 16 14 12 19 19 H 1.48493 * 109.46970 * 329.99611 * 16 14 12 20 20 H 1.09001 * 109.47060 * 90.02876 * 1 2 3 21 21 H 1.09004 * 109.47073 * 210.02365 * 1 2 3 22 22 H 1.09000 * 109.47212 * 330.02448 * 1 2 3 23 23 H 1.08001 * 126.91875 * 180.02562 * 6 4 3 24 24 H 0.96702 * 114.00008 * 299.99937 * 9 8 7 25 25 H 0.96991 * 120.00034 * 359.97438 * 11 8 7 26 26 H 0.96997 * 119.99729 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2130 1.0465 0.0000 4 7 3.4541 0.7052 0.0005 5 1 4.2106 1.3124 0.0010 6 6 3.5223 -0.6462 0.0003 7 6 2.2429 -1.0882 0.0058 8 16 1.7075 -2.7668 0.0155 9 8 1.5539 -3.2422 1.4532 10 8 0.4579 -2.8694 -0.6533 11 7 2.8277 -3.7080 -0.7603 12 6 2.6247 -5.0572 -0.8782 13 1 1.7343 -5.5074 -0.4649 14 6 3.5640 -5.8461 -1.5280 15 7 4.6493 -5.2974 -2.0313 16 14 3.2874 -7.6866 -1.6882 17 1 2.5473 -7.9684 -2.9444 18 1 4.5985 -8.3833 -1.7193 19 1 2.4968 -8.1711 -0.5284 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 4.4173 -1.2506 0.0011 24 1 2.3697 -3.1999 1.9708 25 1 3.6272 -3.3035 -1.1318 26 1 5.3054 -5.8487 -2.4857 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725552021.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:37 Heat of formation + Delta-G solvation = 47.482393 kcal Electronic energy + Delta-G solvation = -15025.019773 eV Core-core repulsion = 12269.862454 eV Total energy + Delta-G solvation = -2755.157318 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 234.057 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.07873 -36.92730 -36.29903 -35.35553 -35.05090 -32.36335 -31.61131 -30.00034 -25.59133 -24.40604 -23.91129 -20.39424 -19.56839 -18.75359 -18.17589 -17.57076 -17.51638 -16.34754 -15.90001 -15.43743 -15.01602 -14.87791 -14.62092 -13.96782 -13.39398 -13.30414 -13.03172 -12.84832 -12.12849 -12.07433 -11.80789 -11.71739 -11.18637 -10.88470 -10.63667 -10.50637 -9.18437 -7.84253 -5.40782 -5.11895 -0.14596 0.92203 0.99410 1.45035 1.47915 1.57025 1.85993 2.66578 3.32339 3.41857 3.59261 3.92609 4.09602 4.26252 4.33216 4.57069 4.72173 4.94053 5.16669 5.52305 5.80115 6.33623 6.49536 7.03420 7.52091 7.84678 8.51386 9.39413 Molecular weight = 234.06amu Principal moments of inertia in cm(-1) A = 0.044491 B = 0.008364 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.194949 B = 3346.743404 C = 3710.116680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.189 5.189 3 N -0.073 5.073 4 N -0.301 5.301 5 H 0.489 0.511 6 C 0.032 3.968 7 C -0.355 4.355 8 S 1.810 4.190 9 O -0.949 6.949 10 O -1.072 7.072 11 N -0.953 5.953 12 C -0.255 4.255 13 H 0.037 0.963 14 C -0.057 4.057 15 N -0.953 5.953 16 Si 0.939 3.061 17 H -0.294 1.294 18 H -0.278 1.278 19 H -0.282 1.282 20 H 0.107 0.893 21 H 0.094 0.906 22 H 0.144 0.856 23 H 0.249 0.751 24 H 0.413 0.587 25 H 0.372 0.628 26 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 20.973 7.335 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N 0.011 4.989 3 N -0.049 5.049 4 N -0.036 5.036 5 H 0.345 0.655 6 C -0.118 4.118 7 C -0.544 4.544 8 S 1.871 4.129 9 O -0.800 6.800 10 O -1.059 7.059 11 N -0.695 5.695 12 C -0.391 4.391 13 H 0.055 0.945 14 C -0.252 4.252 15 N -0.605 5.605 16 Si 0.769 3.231 17 H -0.222 1.222 18 H -0.204 1.204 19 H -0.207 1.207 20 H 0.126 0.874 21 H 0.113 0.887 22 H 0.162 0.838 23 H 0.265 0.735 24 H 0.272 0.728 25 H 0.199 0.801 26 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.301 21.820 7.387 23.039 hybrid contribution 0.801 -1.742 -0.745 2.057 sum 1.103 20.078 6.642 21.177 Atomic orbital electron populations 1.22819 0.69383 1.07240 1.07195 1.47894 1.10760 1.02734 1.37477 1.78050 0.91108 1.13380 1.22331 1.45218 1.06370 1.09667 1.42378 0.65460 1.24356 1.01174 0.82679 1.03624 1.43074 0.97839 1.17136 0.96382 1.81851 0.79757 0.77858 0.73389 1.85383 1.48375 1.92028 1.54174 1.92374 1.53792 1.86578 1.73181 1.52956 1.34284 1.10525 1.71770 1.19589 1.02083 0.88751 1.28711 0.94517 1.25483 0.97568 1.00924 1.01190 1.69719 1.11422 1.35094 1.44217 0.85677 0.76962 0.83030 0.77456 1.22191 1.20378 1.20729 0.87443 0.88741 0.83787 0.73479 0.72793 0.80079 0.93985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.59 10.61 127.77 1.36 2.94 15 2 N -0.19 -4.46 3.69 -367.60 -1.36 -5.81 15 3 N -0.07 -1.15 13.15 37.02 0.49 -0.67 15 4 N -0.30 -2.93 6.98 -57.35 -0.40 -3.33 15 5 H 0.49 -0.67 8.96 -219.95 -1.97 -2.64 15 6 C 0.03 0.57 12.03 83.49 1.00 1.58 15 7 C -0.35 -10.44 7.12 83.73 0.60 -9.84 15 8 S 1.81 86.11 5.03 -56.49 -0.28 85.82 15 9 O -0.95 -44.45 13.56 -126.85 -1.72 -46.17 15 10 O -1.07 -64.74 16.62 -126.85 -2.11 -66.85 15 11 N -0.95 -52.83 5.82 -54.26 -0.32 -53.14 15 12 C -0.26 -16.58 9.94 84.03 0.84 -15.74 15 13 H 0.04 2.55 7.82 -2.91 -0.02 2.53 15 14 C -0.06 -3.61 5.50 84.86 0.47 -3.15 15 15 N -0.95 -59.75 13.06 21.65 0.28 -59.46 15 16 Si 0.94 50.55 29.55 68.60 2.03 52.58 15 17 H -0.29 -15.85 7.11 99.48 0.71 -15.14 15 18 H -0.28 -14.17 7.11 99.48 0.71 -13.46 15 19 H -0.28 -14.99 7.11 99.48 0.71 -14.28 15 20 H 0.11 2.33 8.14 -2.39 -0.02 2.31 15 21 H 0.09 2.72 6.98 -2.38 -0.02 2.70 15 22 H 0.14 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.25 3.09 8.06 -2.91 -0.02 3.06 15 24 H 0.41 14.65 9.03 -87.93 -0.79 13.85 15 25 H 0.37 19.35 7.98 -96.75 -0.77 18.57 15 26 H 0.25 15.07 8.31 -92.71 -0.77 14.30 15 Total: -1.00 -106.46 247.42 -1.42 -107.88 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -2.29 Total: 13.38 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 4.26 Total: -24.21 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -1.30 Total: -122.42 kcal Atomic # 8 Polarization: -109.19 SS G_CDS: -3.83 Total: -113.02 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.03 Total: 52.58 kcal Atomic # 16 Polarization: 86.11 SS G_CDS: -0.28 Total: 85.82 kcal Total: -106.46 -1.42 -107.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725552021.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.358 kcal (2) G-P(sol) polarization free energy of solvation -106.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds